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Volumn 520, Issue , 2013, Pages 31-48

Conformational ensemble view of G protein-coupled receptors and the effect of mutations and ligand binding

Author keywords

Conformational energy landscape; Functional selectivity; GPCRs; Keywords; Mutagenesis; Protein structure prediction; Seven transmembrane receptors

Indexed keywords

ADENOSINE A3 RECEPTOR; CHEMOKINE RECEPTOR CCR5; G PROTEIN COUPLED RECEPTOR;

EID: 84872527828     PISSN: 00766879     EISSN: 15577988     Source Type: Book Series    
DOI: 10.1016/B978-0-12-391861-1.00002-2     Document Type: Chapter
Times cited : (17)

References (41)
  • 1
    • 84855710159 scopus 로고    scopus 로고
    • Bihelix: Towards de novo structure prediction of an ensemble of G-protein coupled receptor conformations
    • R. Abrol, J.K. Bray, and W.A. Goddard Bihelix: Towards de novo structure prediction of an ensemble of G-protein coupled receptor conformations Proteins: Structure, Function, and Bioinformatics 80 2 2012 505 518
    • (2012) Proteins: Structure, Function, and Bioinformatics , vol.80 , Issue.2 , pp. 505-518
    • Abrol, R.1    Bray, J.K.2    Goddard, W.A.3
  • 2
    • 84872574009 scopus 로고    scopus 로고
    • G protein-coupled receptors: Conformational 'gatekeepers' of transmembrane signal transduction and diversification
    • J.D. Adams, K.K. Parker, RSC Cambridge
    • R. Abrol, and W.A. Goddard 3rd G protein-coupled receptors: Conformational 'gatekeepers' of transmembrane signal transduction and diversification J.D. Adams, K.K. Parker, Extracellular and intracellular signalling 2011 RSC Cambridge 188 229
    • (2011) Extracellular and Intracellular Signalling , pp. 188-229
    • Abrol, R.1    Goddard III, W.A.2
  • 3
    • 84934443930 scopus 로고    scopus 로고
    • Structure prediction of G protein-coupled receptors and their ensemble of functionally important conformations
    • N. Vaidehi, J. Klein-Seetharaman, Humana New York
    • R. Abrol, A.R. Griffith, J.K. Bray, and W.A. Goddard Structure prediction of G protein-coupled receptors and their ensemble of functionally important conformations N. Vaidehi, J. Klein-Seetharaman, Membrane protein structure: Methods and protocols Vol. 914 2012 Humana New York 237 254
    • (2012) Membrane Protein Structure: Methods and Protocols , vol.914 , pp. 237-254
    • Abrol, R.1    Griffith, A.R.2    Bray, J.K.3    Goddard, W.A.4
  • 4
    • 84862776606 scopus 로고    scopus 로고
    • Characterizing and predicting the functional and conformational diversity of seven-transmembrane proteins
    • R. Abrol, S.K. Kim, J.K. Bray, A.R. Griffith, and W.A. Goddard Characterizing and predicting the functional and conformational diversity of seven-transmembrane proteins Methods 55 4 2011 405 414
    • (2011) Methods , vol.55 , Issue.4 , pp. 405-414
    • Abrol, R.1    Kim, S.K.2    Bray, J.K.3    Griffith, A.R.4    Goddard, W.A.5
  • 5
    • 77957055780 scopus 로고
    • Integrated methods for the construction of three dimensional models and computational probing of structure function relations in G protein-coupled receptors
    • S.C. Sealfon, P.M. Conn, Academic Press San Diego
    • J.A. Ballesteros, and H. Weinstein Integrated methods for the construction of three dimensional models and computational probing of structure function relations in G protein-coupled receptors S.C. Sealfon, P.M. Conn, Methods in neuroscience Vol. 25 1995 Academic Press San Diego 366 428
    • (1995) Methods in Neuroscience , vol.25 , pp. 366-428
    • Ballesteros, J.A.1    Weinstein, H.2
  • 6
    • 67650090499 scopus 로고    scopus 로고
    • G-protein-coupled receptor structures were not built in a day
    • T.M. Blois, and J.U. Bowie G-protein-coupled receptor structures were not built in a day Protein Science 18 7 2009 1335 1342
    • (2009) Protein Science , vol.18 , Issue.7 , pp. 1335-1342
    • Blois, T.M.1    Bowie, J.U.2
  • 8
    • 78449305788 scopus 로고    scopus 로고
    • Structure of the human dopamine D3 receptor in complex with a D2/D3 selective antagonist
    • E.Y.T. Chien, W. Liu, Q.A. Zhao, V. Katritch, G.W. Han, and M.A. Hanson Structure of the human dopamine D3 receptor in complex with a D2/D3 selective antagonist Science 330 6007 2010 1091 1095
    • (2010) Science , vol.330 , Issue.6007 , pp. 1091-1095
    • Chien, E.Y.T.1    Liu, W.2    Zhao, Q.A.3    Katritch, V.4    Han, G.W.5    Hanson, M.A.6
  • 10
    • 77958039571 scopus 로고    scopus 로고
    • Energy landscapes as a tool to integrate GPCR structure, dynamics, and function
    • X. Deupi, and B.K. Kobilka Energy landscapes as a tool to integrate GPCR structure, dynamics, and function Physiology 25 5 2010 293 303
    • (2010) Physiology , vol.25 , Issue.5 , pp. 293-303
    • Deupi, X.1    Kobilka, B.K.2
  • 11
    • 0037166356 scopus 로고    scopus 로고
    • 3 adenosine receptor
    • DOI 10.1074/jbc.M110960200
    • Z.G. Gao, A. Chen, D. Barak, S.K. Kim, C.E. Muller, and K.A. Jacobson Identification by site-directed mutagenesis of residues involved in ligand recognition and activation of the human A(3) adenosine receptor The Journal of Biological Chemistry 277 21 2002 19056 19063 (Pubitemid 34952470)
    • (2002) Journal of Biological Chemistry , vol.277 , Issue.21 , pp. 19056-19063
    • Gao, Z.-G.1    Chen, A.2    Barak, D.3    Kim, S.-K.4    Mu Ller, C.E.5    Jacobson, K.A.6
  • 12
    • 84862777405 scopus 로고    scopus 로고
    • Structure of the human M2 muscarinic acetylcholine receptor bound to an antagonist
    • K. Haga, A.C. Kruse, H. Asada, T. Yurugi-Kobayashi, M. Shiroishi, and C. Zhang Structure of the human M2 muscarinic acetylcholine receptor bound to an antagonist Nature 482 7386 2012 547 551
    • (2012) Nature , vol.482 , Issue.7386 , pp. 547-551
    • Haga, K.1    Kruse, A.C.2    Asada, H.3    Yurugi-Kobayashi, T.4    Shiroishi, M.5    Zhang, C.6
  • 14
    • 34548724959 scopus 로고    scopus 로고
    • Prediction of the 3D structure of FMRF-amide neuropeptides bound to the mouse MrgC11 GPCR and experimental validation
    • DOI 10.1002/cbic.200700188
    • J. Heo, S.K. Han, N. Vaidehi, J. Wendel, P. Kekenes-Huskey, and W.A. Goddard 3rd Prediction of the 3D structure of FMRF-amide neuropeptides bound to the mouse MrgC11 GPCR and experimental validation ChemBioChem 8 13 2007 1527 1539 (Pubitemid 47436911)
    • (2007) ChemBioChem , vol.8 , Issue.13 , pp. 1527-1539
    • Heo, J.1    Han, S.-K.2    Vaidehi, N.3    Wendel, J.4    Kekenes-Huskey, P.5    Goddard III, W.A.6
  • 15
    • 56749103466 scopus 로고    scopus 로고
    • The 2.6 angstrom crystal structure of a human A2A adenosine receptor bound to an antagonist
    • V.P. Jaakola, M.T. Griffith, M.A. Hanson, V. Cherezov, E.Y. Chien, and J.R. Lane The 2.6 angstrom crystal structure of a human A2A adenosine receptor bound to an antagonist Science 322 5905 2008 1211 1217
    • (2008) Science , vol.322 , Issue.5905 , pp. 1211-1217
    • Jaakola, V.P.1    Griffith, M.T.2    Hanson, M.A.3    Cherezov, V.4    Chien, E.Y.5    Lane, J.R.6
  • 16
    • 58149267930 scopus 로고    scopus 로고
    • Flat-bottom strategy for improved accuracy in protein side-chain placements
    • V.W.T. Kam, and W.A. Goddard Flat-bottom strategy for improved accuracy in protein side-chain placements Journal of Chemical Theory and Computation 4 12 2008 2160 2169
    • (2008) Journal of Chemical Theory and Computation , vol.4 , Issue.12 , pp. 2160-2169
    • Kam, V.W.T.1    Goddard, W.A.2
  • 17
    • 34447624153 scopus 로고    scopus 로고
    • Collateral efficacy in drug discovery: Taking advantage of the good (allosteric) nature of 7TM receptors
    • DOI 10.1016/j.tips.2007.06.009, PII S0165614707001551, Allosterism and Collateral Efficacy
    • T. Kenakin Collateral efficacy in drug discovery: Taking advantage of the good (allosteric) nature of 7TM receptors Trends in Pharmacological Sciences 28 8 2007 407 415 (Pubitemid 47087972)
    • (2007) Trends in Pharmacological Sciences , vol.28 , Issue.8 , pp. 407-415
    • Kenakin, T.1
  • 18
    • 84857497773 scopus 로고    scopus 로고
    • Biased signalling and allosteric machines: New vistas and challenges for drug discovery
    • T.P. Kenakin Biased signalling and allosteric machines: New vistas and challenges for drug discovery British Journal of Pharmacology 165 6 2012 1659 1669
    • (2012) British Journal of Pharmacology , vol.165 , Issue.6 , pp. 1659-1669
    • Kenakin, T.P.1
  • 19
    • 77952354490 scopus 로고    scopus 로고
    • Seven transmembrane receptors as shape shifting proteins: The impact of allosteric modulation and functional selectivity on new drug discovery
    • T. Kenakin, and L.J. Miller Seven transmembrane receptors as shape shifting proteins: The impact of allosteric modulation and functional selectivity on new drug discovery Pharmacological Reviews 62 2 2010 265 304
    • (2010) Pharmacological Reviews , vol.62 , Issue.2 , pp. 265-304
    • Kenakin, T.1    Miller, L.J.2
  • 21
    • 40849098660 scopus 로고    scopus 로고
    • Molecular interactions of CCR5 with major classes of small-molecule anti-HIV CCR5 antagonists
    • DOI 10.1124/mol.107.042101
    • R. Kondru, J. Zhang, C. Ji, T. Mirzadegan, D. Rotstein, and S. Sankuratri Molecular interactions of CCR5 with major classes of small-molecule anti-HIV CCR5 antagonists Molecular Pharmacology 73 3 2008 789 800 (Pubitemid 351397884)
    • (2008) Molecular Pharmacology , vol.73 , Issue.3 , pp. 789-800
    • Kondru, R.1    Zhang, J.2    Ji, C.3    Mirzadegan, T.4    Rotstein, D.5    Sankuratri, S.6    Dioszegi, M.7
  • 22
    • 84863115467 scopus 로고    scopus 로고
    • Structure and dynamics of the M3 muscarinic acetylcholine receptor
    • A.C. Kruse, J.X. Hu, A.C. Pan, D.H. Arlow, D.M. Rosenbaum, and E. Rosemond Structure and dynamics of the M3 muscarinic acetylcholine receptor Nature 482 7386 2012 552 556
    • (2012) Nature , vol.482 , Issue.7386 , pp. 552-556
    • Kruse, A.C.1    Hu, J.X.2    Pan, A.C.3    Arlow, D.H.4    Rosenbaum, D.M.5    Rosemond, E.6
  • 23
    • 42149181885 scopus 로고    scopus 로고
    • Structural diversity of G protein-coupled receptors and significance for drug discovery
    • M.C. Lagerstrom, and H.B. Schioth Structural diversity of G protein-coupled receptors and significance for drug discovery Nature Reviews. Drug Discovery 7 4 2008 339 357
    • (2008) Nature Reviews. Drug Discovery , vol.7 , Issue.4 , pp. 339-357
    • Lagerstrom, M.C.1    Schioth, H.B.2
  • 25
    • 33644861214 scopus 로고    scopus 로고
    • OPM: Orientations of proteins in membranes database
    • DOI 10.1093/bioinformatics/btk023
    • M.A. Lomize, A.L. Lomize, I.D. Pogozheva, and H.I. Mosberg OPM: Orientations of proteins in membranes database Bioinformatics 22 5 2006 623 625 (Pubitemid 43372827)
    • (2006) Bioinformatics , vol.22 , Issue.5 , pp. 623-625
    • Lomize, M.A.1    Lomize, A.L.2    Pogozheva, I.D.3    Mosberg, H.I.4
  • 29
    • 63849323943 scopus 로고    scopus 로고
    • Conformational toggle switches implicated in basal constitutive and agonist-induced activated states of 5-hydroxytryptamine-4 receptors
    • L.P. Pellissier, J. Sallander, M. Campillo, F. Gaven, E. Queffeulou, and M. Pillot Conformational toggle switches implicated in basal constitutive and agonist-induced activated states of 5-hydroxytryptamine-4 receptors Molecular Pharmacology 75 4 2009 982 990
    • (2009) Molecular Pharmacology , vol.75 , Issue.4 , pp. 982-990
    • Pellissier, L.P.1    Sallander, J.2    Campillo, M.3    Gaven, F.4    Queffeulou, E.5    Pillot, M.6
  • 30
    • 27644477496 scopus 로고    scopus 로고
    • When 7 transmembrane receptors are not G protein-coupled receptors
    • DOI 10.1172/JCI26950
    • K. Rajagopal, R.J. Lefkowitz, and H.A. Rockman When 7 transmembrane receptors are not G protein-coupled receptors The Journal of Clinical Investigation 115 11 2005 2971 2974 (Pubitemid 41567561)
    • (2005) Journal of Clinical Investigation , vol.115 , Issue.11 , pp. 2971-2974
    • Rajagopal, K.1    Lefkowitz, R.J.2    Rockman, H.A.3
  • 31
    • 80051658642 scopus 로고    scopus 로고
    • Crystal structure of the beta2 adrenergic receptor-Gs protein complex
    • S.G. Rasmussen, B.T. DeVree, Y. Zou, A.C. Kruse, K.Y. Chung, and T.S. Kobilka Crystal structure of the beta2 adrenergic receptor-Gs protein complex Nature 477 7366 2011 549 555
    • (2011) Nature , vol.477 , Issue.7366 , pp. 549-555
    • Rasmussen, S.G.1    Devree, B.T.2    Zou, Y.3    Kruse, A.C.4    Chung, K.Y.5    Kobilka, T.S.6
  • 32
    • 66249144426 scopus 로고    scopus 로고
    • The structure and function of G-protein-coupled receptors
    • D.M. Rosenbaum, S.G. Rasmussen, and B.K. Kobilka The structure and function of G-protein-coupled receptors Nature 459 7245 2009 356 363
    • (2009) Nature , vol.459 , Issue.7245 , pp. 356-363
    • Rosenbaum, D.M.1    Rasmussen, S.G.2    Kobilka, B.K.3
  • 33
    • 5044235587 scopus 로고    scopus 로고
    • Electron crystallography reveals the structure of metarhodopsin I
    • DOI 10.1038/sj.emboj.7600374
    • J.J. Ruprecht, T. Mielke, R. Vogel, C. Villa, and G.F.X. Schertler Electron crystallography reveals the structure of metarhodopsin I The EMBO Journal 23 18 2004 3609 3620 (Pubitemid 39336283)
    • (2004) EMBO Journal , vol.23 , Issue.18 , pp. 3609-3620
    • Ruprecht, J.J.1    Mielke, T.2    Vogel, R.3    Villa, C.4    Schertler, G.F.X.5
  • 34
    • 80052359992 scopus 로고    scopus 로고
    • Emerging paradigms of beta-arrestin-dependent seven transmembrane receptor signaling
    • A.K. Shukla, K.H. Xiao, and R.J. Lefkowitz Emerging paradigms of beta-arrestin-dependent seven transmembrane receptor signaling Trends in Biochemical Sciences 36 9 2011 457 469
    • (2011) Trends in Biochemical Sciences , vol.36 , Issue.9 , pp. 457-469
    • Shukla, A.K.1    Xiao, K.H.2    Lefkowitz, R.J.3
  • 36
    • 77955981080 scopus 로고    scopus 로고
    • Growth and excitement in membrane protein structural biology
    • C.G. Tate, and R.C. Stevens Growth and excitement in membrane protein structural biology Current Opinion in Structural Biology 20 4 2010 399 400
    • (2010) Current Opinion in Structural Biology , vol.20 , Issue.4 , pp. 399-400
    • Tate, C.G.1    Stevens, R.C.2
  • 40
    • 85027927015 scopus 로고    scopus 로고
    • Structures of the CXCR4 chemokine GPCR with small-molecule and cyclic peptide antagonists
    • B.L. Wu, E.Y.T. Chien, C.D. Mol, G. Fenalti, W. Liu, and V. Katritch Structures of the CXCR4 chemokine GPCR with small-molecule and cyclic peptide antagonists Science 330 6007 2010 1066 1071
    • (2010) Science , vol.330 , Issue.6007 , pp. 1066-1071
    • Wu, B.L.1    Chien, E.Y.T.2    Mol, C.D.3    Fenalti, G.4    Liu, W.5    Katritch, V.6
  • 41
    • 79954782236 scopus 로고    scopus 로고
    • Structure of an agonist-bound human A(2A) adenosine receptor
    • F. Xu, H.X. Wu, V. Katritch, G.W. Han, K.A. Jacobson, and Z.G. Gao Structure of an agonist-bound human A(2A) adenosine receptor Science 332 6027 2011 322 327
    • (2011) Science , vol.332 , Issue.6027 , pp. 322-327
    • Xu, F.1    Wu, H.X.2    Katritch, V.3    Han, G.W.4    Jacobson, K.A.5    Gao, Z.G.6


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