-
1
-
-
84855710159
-
Bihelix: Towards de novo structure prediction of an ensemble of G-protein coupled receptor conformations
-
R. Abrol, J.K. Bray, and W.A. Goddard Bihelix: Towards de novo structure prediction of an ensemble of G-protein coupled receptor conformations Proteins: Structure, Function, and Bioinformatics 80 2 2012 505 518
-
(2012)
Proteins: Structure, Function, and Bioinformatics
, vol.80
, Issue.2
, pp. 505-518
-
-
Abrol, R.1
Bray, J.K.2
Goddard, W.A.3
-
2
-
-
84872574009
-
G protein-coupled receptors: Conformational 'gatekeepers' of transmembrane signal transduction and diversification
-
J.D. Adams, K.K. Parker, RSC Cambridge
-
R. Abrol, and W.A. Goddard 3rd G protein-coupled receptors: Conformational 'gatekeepers' of transmembrane signal transduction and diversification J.D. Adams, K.K. Parker, Extracellular and intracellular signalling 2011 RSC Cambridge 188 229
-
(2011)
Extracellular and Intracellular Signalling
, pp. 188-229
-
-
Abrol, R.1
Goddard III, W.A.2
-
3
-
-
84934443930
-
Structure prediction of G protein-coupled receptors and their ensemble of functionally important conformations
-
N. Vaidehi, J. Klein-Seetharaman, Humana New York
-
R. Abrol, A.R. Griffith, J.K. Bray, and W.A. Goddard Structure prediction of G protein-coupled receptors and their ensemble of functionally important conformations N. Vaidehi, J. Klein-Seetharaman, Membrane protein structure: Methods and protocols Vol. 914 2012 Humana New York 237 254
-
(2012)
Membrane Protein Structure: Methods and Protocols
, vol.914
, pp. 237-254
-
-
Abrol, R.1
Griffith, A.R.2
Bray, J.K.3
Goddard, W.A.4
-
4
-
-
84862776606
-
Characterizing and predicting the functional and conformational diversity of seven-transmembrane proteins
-
R. Abrol, S.K. Kim, J.K. Bray, A.R. Griffith, and W.A. Goddard Characterizing and predicting the functional and conformational diversity of seven-transmembrane proteins Methods 55 4 2011 405 414
-
(2011)
Methods
, vol.55
, Issue.4
, pp. 405-414
-
-
Abrol, R.1
Kim, S.K.2
Bray, J.K.3
Griffith, A.R.4
Goddard, W.A.5
-
5
-
-
77957055780
-
Integrated methods for the construction of three dimensional models and computational probing of structure function relations in G protein-coupled receptors
-
S.C. Sealfon, P.M. Conn, Academic Press San Diego
-
J.A. Ballesteros, and H. Weinstein Integrated methods for the construction of three dimensional models and computational probing of structure function relations in G protein-coupled receptors S.C. Sealfon, P.M. Conn, Methods in neuroscience Vol. 25 1995 Academic Press San Diego 366 428
-
(1995)
Methods in Neuroscience
, vol.25
, pp. 366-428
-
-
Ballesteros, J.A.1
Weinstein, H.2
-
6
-
-
67650090499
-
G-protein-coupled receptor structures were not built in a day
-
T.M. Blois, and J.U. Bowie G-protein-coupled receptor structures were not built in a day Protein Science 18 7 2009 1335 1342
-
(2009)
Protein Science
, vol.18
, Issue.7
, pp. 1335-1342
-
-
Blois, T.M.1
Bowie, J.U.2
-
7
-
-
36448995359
-
2-adrenergic G protein-coupled receptor
-
DOI 10.1126/science.1150577
-
V. Cherezov, D.M. Rosenbaum, M.A. Hanson, S.G. Rasmussen, F.S. Thian, and T.S. Kobilka High-resolution crystal structure of an engineered human beta2-adrenergic G protein-coupled receptor Science 318 5854 2007 1258 1265 (Pubitemid 350172884)
-
(2007)
Science
, vol.318
, Issue.5854
, pp. 1258-1265
-
-
Cherezov, V.1
Rosenbaum, D.M.2
Hanson, M.A.3
Rasmussen, S.G.F.4
Foon, S.T.5
Kobilka, T.S.6
Choi, H.-J.7
Kuhn, P.8
Weis, W.I.9
Kobilka, B.K.10
Stevens, R.C.11
-
8
-
-
78449305788
-
Structure of the human dopamine D3 receptor in complex with a D2/D3 selective antagonist
-
E.Y.T. Chien, W. Liu, Q.A. Zhao, V. Katritch, G.W. Han, and M.A. Hanson Structure of the human dopamine D3 receptor in complex with a D2/D3 selective antagonist Science 330 6007 2010 1091 1095
-
(2010)
Science
, vol.330
, Issue.6007
, pp. 1091-1095
-
-
Chien, E.Y.T.1
Liu, W.2
Zhao, Q.A.3
Katritch, V.4
Han, G.W.5
Hanson, M.A.6
-
9
-
-
79953234218
-
Crystal structure of metarhodopsin II
-
H.W. Choe, Y.J. Kim, J.H. Park, T. Morizumi, E.F. Pai, and N. Krauss Crystal structure of metarhodopsin II Nature 471 7340 2011 651 655
-
(2011)
Nature
, vol.471
, Issue.7340
, pp. 651-655
-
-
Choe, H.W.1
Kim, Y.J.2
Park, J.H.3
Morizumi, T.4
Pai, E.F.5
Krauss, N.6
-
10
-
-
77958039571
-
Energy landscapes as a tool to integrate GPCR structure, dynamics, and function
-
X. Deupi, and B.K. Kobilka Energy landscapes as a tool to integrate GPCR structure, dynamics, and function Physiology 25 5 2010 293 303
-
(2010)
Physiology
, vol.25
, Issue.5
, pp. 293-303
-
-
Deupi, X.1
Kobilka, B.K.2
-
11
-
-
0037166356
-
3 adenosine receptor
-
DOI 10.1074/jbc.M110960200
-
Z.G. Gao, A. Chen, D. Barak, S.K. Kim, C.E. Muller, and K.A. Jacobson Identification by site-directed mutagenesis of residues involved in ligand recognition and activation of the human A(3) adenosine receptor The Journal of Biological Chemistry 277 21 2002 19056 19063 (Pubitemid 34952470)
-
(2002)
Journal of Biological Chemistry
, vol.277
, Issue.21
, pp. 19056-19063
-
-
Gao, Z.-G.1
Chen, A.2
Barak, D.3
Kim, S.-K.4
Mu Ller, C.E.5
Jacobson, K.A.6
-
12
-
-
84862777405
-
Structure of the human M2 muscarinic acetylcholine receptor bound to an antagonist
-
K. Haga, A.C. Kruse, H. Asada, T. Yurugi-Kobayashi, M. Shiroishi, and C. Zhang Structure of the human M2 muscarinic acetylcholine receptor bound to an antagonist Nature 482 7386 2012 547 551
-
(2012)
Nature
, vol.482
, Issue.7386
, pp. 547-551
-
-
Haga, K.1
Kruse, A.C.2
Asada, H.3
Yurugi-Kobayashi, T.4
Shiroishi, M.5
Zhang, C.6
-
13
-
-
84857254248
-
Crystal structure of a lipid G protein-coupled receptor
-
M.A. Hanson, C.B. Roth, E.J. Jo, M.T. Griffith, F.L. Scott, and G. Reinhart Crystal structure of a lipid G protein-coupled receptor Science 335 6070 2012 851 855
-
(2012)
Science
, vol.335
, Issue.6070
, pp. 851-855
-
-
Hanson, M.A.1
Roth, C.B.2
Jo, E.J.3
Griffith, M.T.4
Scott, F.L.5
Reinhart, G.6
-
14
-
-
34548724959
-
Prediction of the 3D structure of FMRF-amide neuropeptides bound to the mouse MrgC11 GPCR and experimental validation
-
DOI 10.1002/cbic.200700188
-
J. Heo, S.K. Han, N. Vaidehi, J. Wendel, P. Kekenes-Huskey, and W.A. Goddard 3rd Prediction of the 3D structure of FMRF-amide neuropeptides bound to the mouse MrgC11 GPCR and experimental validation ChemBioChem 8 13 2007 1527 1539 (Pubitemid 47436911)
-
(2007)
ChemBioChem
, vol.8
, Issue.13
, pp. 1527-1539
-
-
Heo, J.1
Han, S.-K.2
Vaidehi, N.3
Wendel, J.4
Kekenes-Huskey, P.5
Goddard III, W.A.6
-
15
-
-
56749103466
-
The 2.6 angstrom crystal structure of a human A2A adenosine receptor bound to an antagonist
-
V.P. Jaakola, M.T. Griffith, M.A. Hanson, V. Cherezov, E.Y. Chien, and J.R. Lane The 2.6 angstrom crystal structure of a human A2A adenosine receptor bound to an antagonist Science 322 5905 2008 1211 1217
-
(2008)
Science
, vol.322
, Issue.5905
, pp. 1211-1217
-
-
Jaakola, V.P.1
Griffith, M.T.2
Hanson, M.A.3
Cherezov, V.4
Chien, E.Y.5
Lane, J.R.6
-
16
-
-
58149267930
-
Flat-bottom strategy for improved accuracy in protein side-chain placements
-
V.W.T. Kam, and W.A. Goddard Flat-bottom strategy for improved accuracy in protein side-chain placements Journal of Chemical Theory and Computation 4 12 2008 2160 2169
-
(2008)
Journal of Chemical Theory and Computation
, vol.4
, Issue.12
, pp. 2160-2169
-
-
Kam, V.W.T.1
Goddard, W.A.2
-
17
-
-
34447624153
-
Collateral efficacy in drug discovery: Taking advantage of the good (allosteric) nature of 7TM receptors
-
DOI 10.1016/j.tips.2007.06.009, PII S0165614707001551, Allosterism and Collateral Efficacy
-
T. Kenakin Collateral efficacy in drug discovery: Taking advantage of the good (allosteric) nature of 7TM receptors Trends in Pharmacological Sciences 28 8 2007 407 415 (Pubitemid 47087972)
-
(2007)
Trends in Pharmacological Sciences
, vol.28
, Issue.8
, pp. 407-415
-
-
Kenakin, T.1
-
18
-
-
84857497773
-
Biased signalling and allosteric machines: New vistas and challenges for drug discovery
-
T.P. Kenakin Biased signalling and allosteric machines: New vistas and challenges for drug discovery British Journal of Pharmacology 165 6 2012 1659 1669
-
(2012)
British Journal of Pharmacology
, vol.165
, Issue.6
, pp. 1659-1669
-
-
Kenakin, T.P.1
-
19
-
-
77952354490
-
Seven transmembrane receptors as shape shifting proteins: The impact of allosteric modulation and functional selectivity on new drug discovery
-
T. Kenakin, and L.J. Miller Seven transmembrane receptors as shape shifting proteins: The impact of allosteric modulation and functional selectivity on new drug discovery Pharmacological Reviews 62 2 2010 265 304
-
(2010)
Pharmacological Reviews
, vol.62
, Issue.2
, pp. 265-304
-
-
Kenakin, T.1
Miller, L.J.2
-
20
-
-
79955722962
-
3 receptor
-
3 receptor Proteins: Structure, Function, and Bioinformatics 79 6 2011 1878 1897
-
(2011)
Proteins: Structure, Function, and Bioinformatics
, vol.79
, Issue.6
, pp. 1878-1897
-
-
Kim, S.-K.1
Riley, L.2
Abrol, R.3
Jacobson, K.A.4
Goddard III, W.A.5
-
21
-
-
40849098660
-
Molecular interactions of CCR5 with major classes of small-molecule anti-HIV CCR5 antagonists
-
DOI 10.1124/mol.107.042101
-
R. Kondru, J. Zhang, C. Ji, T. Mirzadegan, D. Rotstein, and S. Sankuratri Molecular interactions of CCR5 with major classes of small-molecule anti-HIV CCR5 antagonists Molecular Pharmacology 73 3 2008 789 800 (Pubitemid 351397884)
-
(2008)
Molecular Pharmacology
, vol.73
, Issue.3
, pp. 789-800
-
-
Kondru, R.1
Zhang, J.2
Ji, C.3
Mirzadegan, T.4
Rotstein, D.5
Sankuratri, S.6
Dioszegi, M.7
-
22
-
-
84863115467
-
Structure and dynamics of the M3 muscarinic acetylcholine receptor
-
A.C. Kruse, J.X. Hu, A.C. Pan, D.H. Arlow, D.M. Rosenbaum, and E. Rosemond Structure and dynamics of the M3 muscarinic acetylcholine receptor Nature 482 7386 2012 552 556
-
(2012)
Nature
, vol.482
, Issue.7386
, pp. 552-556
-
-
Kruse, A.C.1
Hu, J.X.2
Pan, A.C.3
Arlow, D.H.4
Rosenbaum, D.M.5
Rosemond, E.6
-
23
-
-
42149181885
-
Structural diversity of G protein-coupled receptors and significance for drug discovery
-
M.C. Lagerstrom, and H.B. Schioth Structural diversity of G protein-coupled receptors and significance for drug discovery Nature Reviews. Drug Discovery 7 4 2008 339 357
-
(2008)
Nature Reviews. Drug Discovery
, vol.7
, Issue.4
, pp. 339-357
-
-
Lagerstrom, M.C.1
Schioth, H.B.2
-
24
-
-
34848928184
-
Prediction of the 3D structure and dynamics of human DP G-protein coupled receptor bound to an agonist and an antagonist
-
DOI 10.1021/ja070865d
-
Y. Li, F. Zhu, N. Vaidehi, W.A. Goddard 3rd, F. Sheinerman, and S. Reiling Prediction of the 3D structure and dynamics of human DP G-protein coupled receptor bound to an agonist and an antagonist Journal of the American Chemical Society 129 35 2007 10720 10731 (Pubitemid 350067482)
-
(2007)
Journal of the American Chemical Society
, vol.129
, Issue.35
, pp. 10720-10731
-
-
Li, Y.1
Zhu, F.2
Vaidehi, N.3
Goddard III, W.A.4
Sheinerman, F.5
Reiling, S.6
Morize, I.7
Mu, L.8
Harris, K.9
Ardati, A.10
Laoui, A.11
-
25
-
-
33644861214
-
OPM: Orientations of proteins in membranes database
-
DOI 10.1093/bioinformatics/btk023
-
M.A. Lomize, A.L. Lomize, I.D. Pogozheva, and H.I. Mosberg OPM: Orientations of proteins in membranes database Bioinformatics 22 5 2006 623 625 (Pubitemid 43372827)
-
(2006)
Bioinformatics
, vol.22
, Issue.5
, pp. 623-625
-
-
Lomize, M.A.1
Lomize, A.L.2
Pogozheva, I.D.3
Mosberg, H.I.4
-
26
-
-
33744954776
-
Structural and molecular interactions of CCR5 inhibitors with CCR5
-
DOI 10.1074/jbc.M512688200
-
K. Maeda, D. Das, H. Ogata-Aoki, H. Nakata, T. Miyakawa, and Y. Tojo Structural and molecular interactions of CCR5 inhibitors with CCR5 The Journal of Biological Chemistry 281 18 2006 12688 12698 (Pubitemid 43855359)
-
(2006)
Journal of Biological Chemistry
, vol.281
, Issue.18
, pp. 12688-12698
-
-
Maeda, K.1
Das, D.2
Ogata-Aoki, H.3
Nakata, H.4
Miyakawa, T.5
Tojo, Y.6
Norman, R.7
Takaoka, Y.8
Ding, J.9
Arnold, G.F.10
Arnold, E.11
Mitsuya, H.12
-
28
-
-
0034604451
-
Crystal structure of rhodopsin: A G protein-coupled receptor
-
DOI 10.1126/science.289.5480.739
-
K. Palczewski, T. Kumasaka, T. Hori, C.A. Behnke, H. Motoshima, and B.A. Fox Crystal structure of rhodopsin: A G protein-coupled receptor Science 289 5480 2000 739 745 (Pubitemid 30650186)
-
(2000)
Science
, vol.289
, Issue.5480
, pp. 739-745
-
-
Palczewski, K.1
Kumasaka, T.2
Hori, T.3
Behnke, C.A.4
Motoshima, H.5
Fox, B.A.6
Le Trong, I.7
Teller, D.C.8
Okada, T.9
Stenkamp, R.E.10
Yamamoto, M.11
Miyano, M.12
-
29
-
-
63849323943
-
Conformational toggle switches implicated in basal constitutive and agonist-induced activated states of 5-hydroxytryptamine-4 receptors
-
L.P. Pellissier, J. Sallander, M. Campillo, F. Gaven, E. Queffeulou, and M. Pillot Conformational toggle switches implicated in basal constitutive and agonist-induced activated states of 5-hydroxytryptamine-4 receptors Molecular Pharmacology 75 4 2009 982 990
-
(2009)
Molecular Pharmacology
, vol.75
, Issue.4
, pp. 982-990
-
-
Pellissier, L.P.1
Sallander, J.2
Campillo, M.3
Gaven, F.4
Queffeulou, E.5
Pillot, M.6
-
30
-
-
27644477496
-
When 7 transmembrane receptors are not G protein-coupled receptors
-
DOI 10.1172/JCI26950
-
K. Rajagopal, R.J. Lefkowitz, and H.A. Rockman When 7 transmembrane receptors are not G protein-coupled receptors The Journal of Clinical Investigation 115 11 2005 2971 2974 (Pubitemid 41567561)
-
(2005)
Journal of Clinical Investigation
, vol.115
, Issue.11
, pp. 2971-2974
-
-
Rajagopal, K.1
Lefkowitz, R.J.2
Rockman, H.A.3
-
31
-
-
80051658642
-
Crystal structure of the beta2 adrenergic receptor-Gs protein complex
-
S.G. Rasmussen, B.T. DeVree, Y. Zou, A.C. Kruse, K.Y. Chung, and T.S. Kobilka Crystal structure of the beta2 adrenergic receptor-Gs protein complex Nature 477 7366 2011 549 555
-
(2011)
Nature
, vol.477
, Issue.7366
, pp. 549-555
-
-
Rasmussen, S.G.1
Devree, B.T.2
Zou, Y.3
Kruse, A.C.4
Chung, K.Y.5
Kobilka, T.S.6
-
32
-
-
66249144426
-
The structure and function of G-protein-coupled receptors
-
D.M. Rosenbaum, S.G. Rasmussen, and B.K. Kobilka The structure and function of G-protein-coupled receptors Nature 459 7245 2009 356 363
-
(2009)
Nature
, vol.459
, Issue.7245
, pp. 356-363
-
-
Rosenbaum, D.M.1
Rasmussen, S.G.2
Kobilka, B.K.3
-
33
-
-
5044235587
-
Electron crystallography reveals the structure of metarhodopsin I
-
DOI 10.1038/sj.emboj.7600374
-
J.J. Ruprecht, T. Mielke, R. Vogel, C. Villa, and G.F.X. Schertler Electron crystallography reveals the structure of metarhodopsin I The EMBO Journal 23 18 2004 3609 3620 (Pubitemid 39336283)
-
(2004)
EMBO Journal
, vol.23
, Issue.18
, pp. 3609-3620
-
-
Ruprecht, J.J.1
Mielke, T.2
Vogel, R.3
Villa, C.4
Schertler, G.F.X.5
-
34
-
-
80052359992
-
Emerging paradigms of beta-arrestin-dependent seven transmembrane receptor signaling
-
A.K. Shukla, K.H. Xiao, and R.J. Lefkowitz Emerging paradigms of beta-arrestin-dependent seven transmembrane receptor signaling Trends in Biochemical Sciences 36 9 2011 457 469
-
(2011)
Trends in Biochemical Sciences
, vol.36
, Issue.9
, pp. 457-469
-
-
Shukla, A.K.1
Xiao, K.H.2
Lefkowitz, R.J.3
-
35
-
-
79960070651
-
Structure of the human histamine H(1) receptor complex with doxepin
-
R.C. Stevens, T. Shimamura, M. Shiroishi, S. Weyand, H. Tsujimoto, and G. Winter Structure of the human histamine H(1) receptor complex with doxepin Nature 475 7354 2011 65 70
-
(2011)
Nature
, vol.475
, Issue.7354
, pp. 65-70
-
-
Stevens, R.C.1
Shimamura, T.2
Shiroishi, M.3
Weyand, S.4
Tsujimoto, H.5
Winter, G.6
-
36
-
-
77955981080
-
Growth and excitement in membrane protein structural biology
-
C.G. Tate, and R.C. Stevens Growth and excitement in membrane protein structural biology Current Opinion in Structural Biology 20 4 2010 399 400
-
(2010)
Current Opinion in Structural Biology
, vol.20
, Issue.4
, pp. 399-400
-
-
Tate, C.G.1
Stevens, R.C.2
-
37
-
-
33748747498
-
Predictions of CCR1 chemokine receptor structure and BX 471 antagonist binding followed by experimental validation
-
DOI 10.1074/jbc.M601389200
-
N. Vaidehi, S. Schlyer, R.J. Trabanino, W.B. Floriano, R. Abrol, and S. Sharma Predictions of CCR1 chemokine receptor structure and BX 471 antagonist binding followed by experimental validation The Journal of Biological Chemistry 281 37 2006 27613 27620 (Pubitemid 44401786)
-
(2006)
Journal of Biological Chemistry
, vol.281
, Issue.37
, pp. 27613-27620
-
-
Vaidehi, N.1
Schlyer, S.2
Trabanino, R.J.3
Floriano, W.B.4
Abrol, R.5
Sharma, S.6
Kochanny, M.7
Koovakat, S.8
Dunning, L.9
Liang, M.10
Fox, J.M.11
De Mendonca, F.L.12
Pease, J.E.13
Goddard III, W.A.14
Horuk, R.15
-
38
-
-
66449111715
-
Beta-Arrestin1 mediates nicotinic acid-induced flushing, but not its antilypolytic effect, in mice
-
R.W. Walters, A.K. Shukla, J.J. Kovacs, J.D. Violin, S.M. DeWire, and C.M. Lam beta-Arrestin1 mediates nicotinic acid-induced flushing, but not its antilypolytic effect, in mice The Journal of Clinical Investigation 119 5 2009 1312 1321
-
(2009)
The Journal of Clinical Investigation
, vol.119
, Issue.5
, pp. 1312-1321
-
-
Walters, R.W.1
Shukla, A.K.2
Kovacs, J.J.3
Violin, J.D.4
Dewire, S.M.5
Lam, C.M.6
-
39
-
-
47949129742
-
Structure of a beta1-adrenergic G-protein-coupled receptor
-
T. Warne, M.J. Serrano-Vega, J.G. Baker, R. Moukhametzianov, P.C. Edwards, and R. Henderson Structure of a beta1-adrenergic G-protein-coupled receptor Nature 454 7203 2008 486 491
-
(2008)
Nature
, vol.454
, Issue.7203
, pp. 486-491
-
-
Warne, T.1
Serrano-Vega, M.J.2
Baker, J.G.3
Moukhametzianov, R.4
Edwards, P.C.5
Henderson, R.6
-
40
-
-
85027927015
-
Structures of the CXCR4 chemokine GPCR with small-molecule and cyclic peptide antagonists
-
B.L. Wu, E.Y.T. Chien, C.D. Mol, G. Fenalti, W. Liu, and V. Katritch Structures of the CXCR4 chemokine GPCR with small-molecule and cyclic peptide antagonists Science 330 6007 2010 1066 1071
-
(2010)
Science
, vol.330
, Issue.6007
, pp. 1066-1071
-
-
Wu, B.L.1
Chien, E.Y.T.2
Mol, C.D.3
Fenalti, G.4
Liu, W.5
Katritch, V.6
-
41
-
-
79954782236
-
Structure of an agonist-bound human A(2A) adenosine receptor
-
F. Xu, H.X. Wu, V. Katritch, G.W. Han, K.A. Jacobson, and Z.G. Gao Structure of an agonist-bound human A(2A) adenosine receptor Science 332 6027 2011 322 327
-
(2011)
Science
, vol.332
, Issue.6027
, pp. 322-327
-
-
Xu, F.1
Wu, H.X.2
Katritch, V.3
Han, G.W.4
Jacobson, K.A.5
Gao, Z.G.6
|