메뉴 건너뛰기




Volumn 1829, Issue 1, 2013, Pages 63-68

Promoter clearance by RNA polymerase II

Author keywords

Abortive initiation; TFIIB; TFIIH; Transcript elongation; Transcript initiation

Indexed keywords

RNA POLYMERASE II;

EID: 84872417349     PISSN: 18749399     EISSN: 18764320     Source Type: Journal    
DOI: 10.1016/j.bbagrm.2012.08.010     Document Type: Review
Times cited : (27)

References (77)
  • 1
    • 0029846871 scopus 로고    scopus 로고
    • The general transcription factors of RNA polymerase II
    • Orphanides G., Lagrange T., Reinberg D. The general transcription factors of RNA polymerase II. Genes Dev. 1996, 10:2657-2683.
    • (1996) Genes Dev. , vol.10 , pp. 2657-2683
    • Orphanides, G.1    Lagrange, T.2    Reinberg, D.3
  • 2
    • 0030249381 scopus 로고    scopus 로고
    • The role of general initiation factors in transcription by RNA polymerase II
    • Roeder R.G. The role of general initiation factors in transcription by RNA polymerase II. Trends Biochem. Sci. 1996, 21:327-335.
    • (1996) Trends Biochem. Sci. , vol.21 , pp. 327-335
    • Roeder, R.G.1
  • 3
    • 2542428546 scopus 로고    scopus 로고
    • Structure and mechanism of the RNA polymerase II transcription machinery
    • Hahn S. Structure and mechanism of the RNA polymerase II transcription machinery. Nat. Struct. Mol. Biol. 2004, 11:394-403.
    • (2004) Nat. Struct. Mol. Biol. , vol.11 , pp. 394-403
    • Hahn, S.1
  • 4
    • 74249102477 scopus 로고    scopus 로고
    • Structure of an RNA polymerase II-TFIIB complex and the transcription initiation mechanism
    • Liu X., Bushnell D.A., Wang D., Calero G., Kornberg R.D. Structure of an RNA polymerase II-TFIIB complex and the transcription initiation mechanism. Science 2010, 327:206-209.
    • (2010) Science , vol.327 , pp. 206-209
    • Liu, X.1    Bushnell, D.A.2    Wang, D.3    Calero, G.4    Kornberg, R.D.5
  • 6
    • 0034717308 scopus 로고    scopus 로고
    • Mechanism of ATP-dependent promoter melting by transcription factor IIH
    • Kim T.K., Ebright R.H., Reinberg D. Mechanism of ATP-dependent promoter melting by transcription factor IIH. Science 2000, 288:1418-1421.
    • (2000) Science , vol.288 , pp. 1418-1421
    • Kim, T.K.1    Ebright, R.H.2    Reinberg, D.3
  • 7
    • 0037518131 scopus 로고    scopus 로고
    • Promoter escape by RNA polymerase II - downstream promoter DNA is required during multiple steps of early transcription
    • Wang X.X., Spangler L., Dvir A. Promoter escape by RNA polymerase II - downstream promoter DNA is required during multiple steps of early transcription. J. Biol. Chem. 2003, 278:10250-10256.
    • (2003) J. Biol. Chem. , vol.278 , pp. 10250-10256
    • Wang, X.X.1    Spangler, L.2    Dvir, A.3
  • 8
    • 34547683177 scopus 로고    scopus 로고
    • The positions of TFIIF and TFIIE in the RNA polymerase II transcription preinitiation complex
    • Chen H.T., Warfield L., Hahn S. The positions of TFIIF and TFIIE in the RNA polymerase II transcription preinitiation complex. Nat. Struct. Mol. Biol. 2007, 14:696-703.
    • (2007) Nat. Struct. Mol. Biol. , vol.14 , pp. 696-703
    • Chen, H.T.1    Warfield, L.2    Hahn, S.3
  • 9
    • 77149124577 scopus 로고    scopus 로고
    • Position of the general transcription factor TFIIF within the RNA polymerase II transcription preinitiation complex
    • Eichner J., Chen H.T., Warfield L., Hahn S. Position of the general transcription factor TFIIF within the RNA polymerase II transcription preinitiation complex. EMBO J. 2010, 29:706-716.
    • (2010) EMBO J. , vol.29 , pp. 706-716
    • Eichner, J.1    Chen, H.T.2    Warfield, L.3    Hahn, S.4
  • 10
    • 79953779997 scopus 로고    scopus 로고
    • Architecture of the RNA polymerase-Spt4/5 complex and basis of universal transcription processivity
    • Martinez-Rucobo F.W., Sainsbury S., Cheung A.C., Cramer P. Architecture of the RNA polymerase-Spt4/5 complex and basis of universal transcription processivity. EMBO J. 2011, 30:1302-1310.
    • (2011) EMBO J. , vol.30 , pp. 1302-1310
    • Martinez-Rucobo, F.W.1    Sainsbury, S.2    Cheung, A.C.3    Cramer, P.4
  • 11
    • 0033010723 scopus 로고    scopus 로고
    • Reconstitution of the transcription factor TFIIH: assignment of functions for the three enzymatic subunits, XPB, XPD, and cdk7
    • Tirode F., Busso D., Coin F., Egly J.M. Reconstitution of the transcription factor TFIIH: assignment of functions for the three enzymatic subunits, XPB, XPD, and cdk7. Mol. Cell 1999, 3:87-95.
    • (1999) Mol. Cell , vol.3 , pp. 87-95
    • Tirode, F.1    Busso, D.2    Coin, F.3    Egly, J.M.4
  • 12
    • 0033104514 scopus 로고    scopus 로고
    • Mutations in XPB and XPD helicases found in xeroderma pigmentosum patients impair the transcription function of TFIIH
    • Coin F., Bergmann E., Tremeau-Bravard A., Egly J.M. Mutations in XPB and XPD helicases found in xeroderma pigmentosum patients impair the transcription function of TFIIH. EMBO J. 1999, 18:1357-1366.
    • (1999) EMBO J. , vol.18 , pp. 1357-1366
    • Coin, F.1    Bergmann, E.2    Tremeau-Bravard, A.3    Egly, J.M.4
  • 13
    • 22144482360 scopus 로고    scopus 로고
    • TFIIH XPB mutants suggest a unified bacterial-like mechanism for promoter opening but not escape
    • Lin Y.C., Choi W.S., Gralla J.D. TFIIH XPB mutants suggest a unified bacterial-like mechanism for promoter opening but not escape. Nat. Struct. Mol. Biol. 2005, 12:603-607.
    • (2005) Nat. Struct. Mol. Biol. , vol.12 , pp. 603-607
    • Lin, Y.C.1    Choi, W.S.2    Gralla, J.D.3
  • 14
    • 0031463993 scopus 로고    scopus 로고
    • Three transitions in the RNA polymerase II transcription complex during initiation
    • Holstege F.C.P., Fiedler U., Timmers H.T.M. Three transitions in the RNA polymerase II transcription complex during initiation. EMBO J. 1997, 16:7468-7480.
    • (1997) EMBO J. , vol.16 , pp. 7468-7480
    • Holstege, F.C.P.1    Fiedler, U.2    Timmers, H.T.M.3
  • 15
    • 0027197863 scopus 로고
    • DNA melting on yeast RNA polymerase-II promoters
    • Giardina C., Lis J.T. DNA melting on yeast RNA polymerase-II promoters. Science 1993, 261:759-762.
    • (1993) Science , vol.261 , pp. 759-762
    • Giardina, C.1    Lis, J.T.2
  • 16
    • 21244484548 scopus 로고    scopus 로고
    • The role of the transcription bubble and TFIIB in promoter clearance by RNA polymerase II
    • Pal M., Ponticelli A.S., Luse D.S. The role of the transcription bubble and TFIIB in promoter clearance by RNA polymerase II. Mol. Cell 2005, 19:101-110.
    • (2005) Mol. Cell , vol.19 , pp. 101-110
    • Pal, M.1    Ponticelli, A.S.2    Luse, D.S.3
  • 17
    • 0022247421 scopus 로고
    • Interaction of RNA polymerase with lacUV5 promoter DNA during mRNA initiation and elongation. Footprinting, methylation, and rifampicin-sensitivity changes accompanying transcription initiation
    • Carpousis A.J., Gralla J.D. Interaction of RNA polymerase with lacUV5 promoter DNA during mRNA initiation and elongation. Footprinting, methylation, and rifampicin-sensitivity changes accompanying transcription initiation. J. Mol. Biol. 1985, 183:165-177.
    • (1985) J. Mol. Biol. , vol.183 , pp. 165-177
    • Carpousis, A.J.1    Gralla, J.D.2
  • 18
    • 0019319452 scopus 로고
    • Cycling of ribonucleic acid polymerase to produce oligonucleotides during initiation in vitro at the lac UV5 promoter
    • Carpousis A.J., Gralla J.D. Cycling of ribonucleic acid polymerase to produce oligonucleotides during initiation in vitro at the lac UV5 promoter. Biochemistry 1980, 19:3245-3253.
    • (1980) Biochemistry , vol.19 , pp. 3245-3253
    • Carpousis, A.J.1    Gralla, J.D.2
  • 19
    • 0037426342 scopus 로고    scopus 로고
    • In vitro studies of transcript initiation by Escherichia coli RNA polymerase. 1. RNA chain initiation, abortive initiation, and promoter escape at three bacteriophage promoters
    • Hsu L.L.M., Vo N.V., Kane C.M., Chamberlin M.J. In vitro studies of transcript initiation by Escherichia coli RNA polymerase. 1. RNA chain initiation, abortive initiation, and promoter escape at three bacteriophage promoters. Biochemistry 2003, 42:3777-3786.
    • (2003) Biochemistry , vol.42 , pp. 3777-3786
    • Hsu, L.L.M.1    Vo, N.V.2    Kane, C.M.3    Chamberlin, M.J.4
  • 20
    • 66149123741 scopus 로고    scopus 로고
    • Direct detection of abortive RNA transcripts in vivo
    • Goldman S.R., Ebright R.H., Nickels B.E. Direct detection of abortive RNA transcripts in vivo. Science 2009, 324:927-928.
    • (2009) Science , vol.324 , pp. 927-928
    • Goldman, S.R.1    Ebright, R.H.2    Nickels, B.E.3
  • 21
    • 0023645766 scopus 로고
    • Abortive initiation by RNA polymerase II in vitro at the adenovirus 2 major late promoter
    • Luse D.S., Jacob G.A. Abortive initiation by RNA polymerase II in vitro at the adenovirus 2 major late promoter. J. Biol. Chem. 1987, 262:14990-14997.
    • (1987) J. Biol. Chem. , vol.262 , pp. 14990-14997
    • Luse, D.S.1    Jacob, G.A.2
  • 22
    • 80053148610 scopus 로고    scopus 로고
    • TFIIF is not required for initiation by RNA polymerase II but it is essential to stabilize TFIIB in early transcription complexes
    • Čabart P., Újvári A., Pal M., Luse D.S. TFIIF is not required for initiation by RNA polymerase II but it is essential to stabilize TFIIB in early transcription complexes. Proc. Natl. Acad. Sci. U. S. A. 2011, 108:15786-15791.
    • (2011) Proc. Natl. Acad. Sci. U. S. A. , vol.108 , pp. 15786-15791
    • Čabart, P.1    Újvári, A.2    Pal, M.3    Luse, D.S.4
  • 23
    • 0028866990 scopus 로고
    • Abortive initiation and first bond formation at an activated adenovirus E4 promoter
    • Jiang Y., Yan M., Gralla J.D. Abortive initiation and first bond formation at an activated adenovirus E4 promoter. J. Biol. Chem. 1995, 270:27332-27338.
    • (1995) J. Biol. Chem. , vol.270 , pp. 27332-27338
    • Jiang, Y.1    Yan, M.2    Gralla, J.D.3
  • 24
    • 0021621122 scopus 로고
    • Purification and characterization of ternary complexes containing accurately initiated RNA polymerase II and less than 20 nucleotides of RNA
    • Coppola J.A., Luse D.S. Purification and characterization of ternary complexes containing accurately initiated RNA polymerase II and less than 20 nucleotides of RNA. J. Mol. Biol. 1984, 178:415-437.
    • (1984) J. Mol. Biol. , vol.178 , pp. 415-437
    • Coppola, J.A.1    Luse, D.S.2
  • 25
    • 0023138161 scopus 로고
    • Transcription initiation by RNA polymerase II in vitro. Properties of preinitiation, initiation and elongation complexes
    • Cai H., Luse D.S. Transcription initiation by RNA polymerase II in vitro. Properties of preinitiation, initiation and elongation complexes. J. Biol. Chem. 1987, 262:298-304.
    • (1987) J. Biol. Chem. , vol.262 , pp. 298-304
    • Cai, H.1    Luse, D.S.2
  • 26
    • 0028143584 scopus 로고
    • Physiological concentrations of purines and pyrimidines
    • Traut T.W. Physiological concentrations of purines and pyrimidines. Mol. Cell. Biochem. 1994, 140:1-22.
    • (1994) Mol. Cell. Biochem. , vol.140 , pp. 1-22
    • Traut, T.W.1
  • 27
    • 0036132904 scopus 로고    scopus 로고
    • Strong natural pausing by RNA polymerase II within 10 bases of transcription start may result in repeated slippage and reextension of the nascent RNA
    • Pal M., Luse D.S. Strong natural pausing by RNA polymerase II within 10 bases of transcription start may result in repeated slippage and reextension of the nascent RNA. Mol. Cell. Biol. 2002, 22:30-40.
    • (2002) Mol. Cell. Biol. , vol.22 , pp. 30-40
    • Pal, M.1    Luse, D.S.2
  • 28
    • 0034671288 scopus 로고    scopus 로고
    • RNA polymerase: structural similarities between bacterial RNA polymerase and eukaryotic RNA polymerase II
    • Ebright R.H. RNA polymerase: structural similarities between bacterial RNA polymerase and eukaryotic RNA polymerase II. J. Mol. Biol. 2000, 304:687-698.
    • (2000) J. Mol. Biol. , vol.304 , pp. 687-698
    • Ebright, R.H.1
  • 29
    • 0029812863 scopus 로고    scopus 로고
    • Promoter escape by RNA polymerase II - a role for an ATP cofactor in suppression of arrest by polymerase at promoter-proximal sites
    • Dvir A., Conaway R.C., Conaway J.W. Promoter escape by RNA polymerase II - a role for an ATP cofactor in suppression of arrest by polymerase at promoter-proximal sites. J. Biol. Chem. 1996, 271:23352-23356.
    • (1996) J. Biol. Chem. , vol.271 , pp. 23352-23356
    • Dvir, A.1    Conaway, R.C.2    Conaway, J.W.3
  • 30
    • 0030740233 scopus 로고    scopus 로고
    • A role for TFIIH in controlling the activity of early RNA polymerase II elongation complexes
    • Dvir A., Conaway R.C., Conaway J.W. A role for TFIIH in controlling the activity of early RNA polymerase II elongation complexes. Proc. Natl. Acad. Sci. U. S. A. 1997, 94:9006-9010.
    • (1997) Proc. Natl. Acad. Sci. U. S. A. , vol.94 , pp. 9006-9010
    • Dvir, A.1    Conaway, R.C.2    Conaway, J.W.3
  • 31
    • 0033529635 scopus 로고    scopus 로고
    • A role for the TFIIH XPB DNA helicase in promoter escape by RNA polymerase II
    • Moreland R.J., Tirode F., Yan Q., Conaway W., Egly J.M., Conaway R.C. A role for the TFIIH XPB DNA helicase in promoter escape by RNA polymerase II. J. Biol. Chem. 1999, 274:22127-22130.
    • (1999) J. Biol. Chem. , vol.274 , pp. 22127-22130
    • Moreland, R.J.1    Tirode, F.2    Yan, Q.3    Conaway, W.4    Egly, J.M.5    Conaway, R.C.6
  • 32
    • 1142310578 scopus 로고    scopus 로고
    • Structural basis of transcription: separation of RNA from DNA by RNA polymerase II
    • Westover K.D., Bushnell D.A., Kornberg R.D. Structural basis of transcription: separation of RNA from DNA by RNA polymerase II. Science 2004, 303:1014-1016.
    • (2004) Science , vol.303 , pp. 1014-1016
    • Westover, K.D.1    Bushnell, D.A.2    Kornberg, R.D.3
  • 33
    • 66149133648 scopus 로고    scopus 로고
    • TATA-binding protein and transcription factor IIB induce transcript slipping during early transcription by RNA polymerase II
    • Gilman B., Drullinger L.F., Kugel J.F., Goodrich J.A. TATA-binding protein and transcription factor IIB induce transcript slipping during early transcription by RNA polymerase II. J. Biol. Chem. 2009, 284:9093-9098.
    • (2009) J. Biol. Chem. , vol.284 , pp. 9093-9098
    • Gilman, B.1    Drullinger, L.F.2    Kugel, J.F.3    Goodrich, J.A.4
  • 34
    • 0037610786 scopus 로고    scopus 로고
    • The initiation-elongation transition: lateral mobility of RNA in RNA polymerase II complexes is greatly reduced at +8/+9 and absent by +23
    • Pal M., Luse D.S. The initiation-elongation transition: lateral mobility of RNA in RNA polymerase II complexes is greatly reduced at +8/+9 and absent by +23. Proc. Natl. Acad. Sci. U. S. A. 2003, 100:5700-5705.
    • (2003) Proc. Natl. Acad. Sci. U. S. A. , vol.100 , pp. 5700-5705
    • Pal, M.1    Luse, D.S.2
  • 35
    • 82455199223 scopus 로고    scopus 로고
    • Structural basis of initial RNA polymerase II transcription
    • Cheung A.C.M., Sainsbury S., Cramer P. Structural basis of initial RNA polymerase II transcription. EMBO J. 2011, 30:4755-4763.
    • (2011) EMBO J. , vol.30 , pp. 4755-4763
    • Cheung, A.C.M.1    Sainsbury, S.2    Cramer, P.3
  • 38
    • 0023102647 scopus 로고
    • A stressed intermediate in the formation of stably initiated RNA chains at the Escherichia coli lac UV5 promoter
    • Straney D.C., Crothers D.M. A stressed intermediate in the formation of stably initiated RNA chains at the Escherichia coli lac UV5 promoter. J. Mol. Biol. 1987, 193:267-278.
    • (1987) J. Mol. Biol. , vol.193 , pp. 267-278
    • Straney, D.C.1    Crothers, D.M.2
  • 39
    • 33751218319 scopus 로고    scopus 로고
    • Abortive initiation and productive initiation by RNA polymerase involve DNA scrunching
    • Revyakin A., Liu C.Y., Ebright R.H., Strick T.R. Abortive initiation and productive initiation by RNA polymerase involve DNA scrunching. Science 2006, 314:1139-1143.
    • (2006) Science , vol.314 , pp. 1139-1143
    • Revyakin, A.1    Liu, C.Y.2    Ebright, R.H.3    Strick, T.R.4
  • 40
    • 33751212468 scopus 로고    scopus 로고
    • Initial transcription by RNA polymerase proceeds through a DNA-scrunching mechanism
    • Kapanidis A.N., Margeat E., Ho S.O., Kortkhonjia E., Weiss S., Ebright R.H. Initial transcription by RNA polymerase proceeds through a DNA-scrunching mechanism. Science 2006, 314:1144-1147.
    • (2006) Science , vol.314 , pp. 1144-1147
    • Kapanidis, A.N.1    Margeat, E.2    Ho, S.O.3    Kortkhonjia, E.4    Weiss, S.5    Ebright, R.H.6
  • 41
    • 80051494401 scopus 로고    scopus 로고
    • Direct tests of the energetic basis of abortive cycling in transcription
    • Vahia A.V., Martin C.T. Direct tests of the energetic basis of abortive cycling in transcription. Biochemistry 2011, 50:7015-7022.
    • (2011) Biochemistry , vol.50 , pp. 7015-7022
    • Vahia, A.V.1    Martin, C.T.2
  • 42
    • 0029074137 scopus 로고
    • Recycling of the general transcription factors during RNA polymerase II transcription
    • Zawel L., Kumar K.P., Reinberg D. Recycling of the general transcription factors during RNA polymerase II transcription. Genes Dev. 1995, 9:1479-1490.
    • (1995) Genes Dev. , vol.9 , pp. 1479-1490
    • Zawel, L.1    Kumar, K.P.2    Reinberg, D.3
  • 43
    • 47049101233 scopus 로고    scopus 로고
    • Control of the timing of promoter escape and RNA catalysis by the transcription factor IIB fingertip
    • Tran K., Gralla J.D. Control of the timing of promoter escape and RNA catalysis by the transcription factor IIB fingertip. J. Biol. Chem. 2008, 283:15665-15671.
    • (2008) J. Biol. Chem. , vol.283 , pp. 15665-15671
    • Tran, K.1    Gralla, J.D.2
  • 44
    • 1142274214 scopus 로고    scopus 로고
    • Structural basis of transcription: an RNA polymerase II-TFIIB cocrystal at 4.5Angstroms
    • Bushnell D.A., Westover K.D., Davis R.E., Kornberg R.D. Structural basis of transcription: an RNA polymerase II-TFIIB cocrystal at 4.5Angstroms. Science 2004, 303:983-988.
    • (2004) Science , vol.303 , pp. 983-988
    • Bushnell, D.A.1    Westover, K.D.2    Davis, R.E.3    Kornberg, R.D.4
  • 45
    • 84856781205 scopus 로고    scopus 로고
    • Architecture of the yeast RNA polymerase II open complex and regulation of activity by TFIIF
    • Fishburn J., Hahn S. Architecture of the yeast RNA polymerase II open complex and regulation of activity by TFIIF. Mol. Cell. Biol. 2012, 32:12-25.
    • (2012) Mol. Cell. Biol. , vol.32 , pp. 12-25
    • Fishburn, J.1    Hahn, S.2
  • 46
    • 84855502866 scopus 로고    scopus 로고
    • Inactivated RNA polymerase II open complexes can be reactivated with TFIIE
    • Čabart P., Luse D.S. Inactivated RNA polymerase II open complexes can be reactivated with TFIIE. J. Biol. Chem. 2012, 287:961-967.
    • (2012) J. Biol. Chem. , vol.287 , pp. 961-967
    • Čabart, P.1    Luse, D.S.2
  • 47
    • 79960440046 scopus 로고    scopus 로고
    • The initiation factor TFE and the elongation factor Spt4/5 compete for the RNAP clamp during transcription initiation and elongation
    • Grohmann D., Nagy J., Chakraborty A., Klose D., Fielden D., Ebright R.H., Michaelis J., Werner F. The initiation factor TFE and the elongation factor Spt4/5 compete for the RNAP clamp during transcription initiation and elongation. Mol. Cell 2011, 43:263-274.
    • (2011) Mol. Cell , vol.43 , pp. 263-274
    • Grohmann, D.1    Nagy, J.2    Chakraborty, A.3    Klose, D.4    Fielden, D.5    Ebright, R.H.6    Michaelis, J.7    Werner, F.8
  • 48
    • 0024504832 scopus 로고
    • Dynamic interaction between a Drosophila transcription factor and RNA polymerase II
    • Price D.H., Sluder A.E., Greenleaf A.L. Dynamic interaction between a Drosophila transcription factor and RNA polymerase II. Mol. Cell. Biol. 1989, 9:1465-1475.
    • (1989) Mol. Cell. Biol. , vol.9 , pp. 1465-1475
    • Price, D.H.1    Sluder, A.E.2    Greenleaf, A.L.3
  • 49
    • 0026629273 scopus 로고
    • Factor-stimulated RNA polymerase-II transcribes at physiological elongation rates on naked DNA but very poorly on chromatin templates
    • Izban M.G., Luse D.S. Factor-stimulated RNA polymerase-II transcribes at physiological elongation rates on naked DNA but very poorly on chromatin templates. J. Biol. Chem. 1992, 267:13647-13655.
    • (1992) J. Biol. Chem. , vol.267 , pp. 13647-13655
    • Izban, M.G.1    Luse, D.S.2
  • 50
    • 0028242344 scopus 로고
    • Functional analysis of Drosophila factor 5 (TFIIF), a general transcription factor
    • Kephart D.D., Wang B.Q., Burton Z.F., Price D.H. Functional analysis of Drosophila factor 5 (TFIIF), a general transcription factor. J. Biol. Chem. 1994, 269:13536-13543.
    • (1994) J. Biol. Chem. , vol.269 , pp. 13536-13543
    • Kephart, D.D.1    Wang, B.Q.2    Burton, Z.F.3    Price, D.H.4
  • 51
    • 0031925534 scopus 로고    scopus 로고
    • Functions of the N- and C-terminal domains of human RAP74 in transcriptional initiation, elongation, and recycling of RNA polymerase II
    • Lei L., Ren D.L., Finkelstein A., Burton Z.F. Functions of the N- and C-terminal domains of human RAP74 in transcriptional initiation, elongation, and recycling of RNA polymerase II. Mol. Cell. Biol. 1998, 18:2130-2142.
    • (1998) Mol. Cell. Biol. , vol.18 , pp. 2130-2142
    • Lei, L.1    Ren, D.L.2    Finkelstein, A.3    Burton, Z.F.4
  • 52
    • 56649106687 scopus 로고    scopus 로고
    • Analysis of factor interactions with RNA polymerase II elongation complexes using a new electrophoretic mobility shift assay - art. no. e135
    • Cheng B., Price D.H. Analysis of factor interactions with RNA polymerase II elongation complexes using a new electrophoretic mobility shift assay - art. no. e135. Nucl. Acids Res. 2008, 36:E135.
    • (2008) Nucl. Acids Res. , vol.36
    • Cheng, B.1    Price, D.H.2
  • 53
    • 0033544966 scopus 로고    scopus 로고
    • Dual roles for transcription factor IIF in promoter escape by RNA polymerase II
    • Yan Q., Moreland R.J., Conaway J.W., Conaway R.C. Dual roles for transcription factor IIF in promoter escape by RNA polymerase II. J. Biol. Chem. 1999, 274:35668-35675.
    • (1999) J. Biol. Chem. , vol.274 , pp. 35668-35675
    • Yan, Q.1    Moreland, R.J.2    Conaway, J.W.3    Conaway, R.C.4
  • 54
    • 0029957789 scopus 로고    scopus 로고
    • Increased accommodation of nascent RNA in a product site on RNA polymerase II during arrest
    • Gu W.G., Wind M., Reines D. Increased accommodation of nascent RNA in a product site on RNA polymerase II during arrest. Proc. Natl. Acad. Sci. U. S. A. 1996, 93:6935-6940.
    • (1996) Proc. Natl. Acad. Sci. U. S. A. , vol.93 , pp. 6935-6940
    • Gu, W.G.1    Wind, M.2    Reines, D.3
  • 55
    • 0037031891 scopus 로고    scopus 로고
    • RNA polymerase II transcription complexes may become arrested if the nascent RNA is shortened to less than 50 nucleotides
    • Újvári A., Pal M., Luse D.S. RNA polymerase II transcription complexes may become arrested if the nascent RNA is shortened to less than 50 nucleotides. J. Biol. Chem. 2002, 277:32527-32537.
    • (2002) J. Biol. Chem. , vol.277 , pp. 32527-32537
    • Újvári, A.1    Pal, M.2    Luse, D.S.3
  • 56
    • 0031840489 scopus 로고    scopus 로고
    • Structural changes in the RNA polymerase II transcription complex during transition from initiation to elongation
    • Samkurashvili I., Luse D.S. Structural changes in the RNA polymerase II transcription complex during transition from initiation to elongation. Mol. Cell. Biol. 1998, 18:5343-5354.
    • (1998) Mol. Cell. Biol. , vol.18 , pp. 5343-5354
    • Samkurashvili, I.1    Luse, D.S.2
  • 57
    • 0034903279 scopus 로고    scopus 로고
    • Promoter clearance by RNA polymerase II is an extended, multistep process strongly affected by sequence
    • Pal M., McKean D., Luse D.S. Promoter clearance by RNA polymerase II is an extended, multistep process strongly affected by sequence. Mol. Cell. Biol. 2001, 21:5815-5825.
    • (2001) Mol. Cell. Biol. , vol.21 , pp. 5815-5825
    • Pal, M.1    McKean, D.2    Luse, D.S.3
  • 58
    • 0029790806 scopus 로고    scopus 로고
    • Translocation and transcriptional arrest during transcript elongation by RNA polymerase II
    • Samkurashvili I., Luse D.S. Translocation and transcriptional arrest during transcript elongation by RNA polymerase II. J. Biol. Chem. 1996, 271:23495-23505.
    • (1996) J. Biol. Chem. , vol.271 , pp. 23495-23505
    • Samkurashvili, I.1    Luse, D.S.2
  • 60
    • 79956330964 scopus 로고    scopus 로고
    • CpG islands and the regulation of transcription
    • Deaton A.M., Bird A. CpG islands and the regulation of transcription. Genes Dev. 2011, 25:1010-1022.
    • (2011) Genes Dev. , vol.25 , pp. 1010-1022
    • Deaton, A.M.1    Bird, A.2
  • 61
    • 18944366286 scopus 로고    scopus 로고
    • Functional characterization of core promoter elements: DPE-specific transcription requires the protein kinase CK2 and the PC4 coactivator
    • Lewis B.A., Sims R.J., Lane W.S., Reinberg D. Functional characterization of core promoter elements: DPE-specific transcription requires the protein kinase CK2 and the PC4 coactivator. Mol. Cell 2005, 18:471-481.
    • (2005) Mol. Cell , vol.18 , pp. 471-481
    • Lewis, B.A.1    Sims, R.J.2    Lane, W.S.3    Reinberg, D.4
  • 62
    • 84858165145 scopus 로고    scopus 로고
    • Genome-wide structure and organization of eukaryotic pre-initiation complexes
    • Rhee H.S., Pugh B.F. Genome-wide structure and organization of eukaryotic pre-initiation complexes. Nature 2012, 483:295-301.
    • (2012) Nature , vol.483 , pp. 295-301
    • Rhee, H.S.1    Pugh, B.F.2
  • 63
    • 33744913056 scopus 로고    scopus 로고
    • Quantitative analysis of in vivo initiator selection by yeast RNA polymerase II supports a scanning model
    • Kuehner J.N., Brow D.A. Quantitative analysis of in vivo initiator selection by yeast RNA polymerase II supports a scanning model. J. Biol. Chem. 2006, 281:14119-14128.
    • (2006) J. Biol. Chem. , vol.281 , pp. 14119-14128
    • Kuehner, J.N.1    Brow, D.A.2
  • 64
    • 44349165718 scopus 로고    scopus 로고
    • Functions of Saccharomyces cerevisiae TFIIF during transcription start site utilization
    • Khaperskyy D.A., Ammerman M.L., Majovski R.C., Ponticelli A.S. Functions of Saccharomyces cerevisiae TFIIF during transcription start site utilization. Mol. Cell. Biol. 2008, 28:3757-3766.
    • (2008) Mol. Cell. Biol. , vol.28 , pp. 3757-3766
    • Khaperskyy, D.A.1    Ammerman, M.L.2    Majovski, R.C.3    Ponticelli, A.S.4
  • 65
    • 84864952483 scopus 로고    scopus 로고
    • Evidence that RNA polymerase II and not TFIIB is responsible for the difference in transcription initiation patterns between Saccharomyces cerevisiae and Schizosaccharomyces pombe
    • Yang C., Ponticelli A.S. Evidence that RNA polymerase II and not TFIIB is responsible for the difference in transcription initiation patterns between Saccharomyces cerevisiae and Schizosaccharomyces pombe. Nucl. Acids Res. 2012, 40:6495-6507.
    • (2012) Nucl. Acids Res. , vol.40 , pp. 6495-6507
    • Yang, C.1    Ponticelli, A.S.2
  • 66
    • 77954759030 scopus 로고    scopus 로고
    • The human Mediator complex: a versatile, genome-wide regulator of transcription
    • Taatjes D.J. The human Mediator complex: a versatile, genome-wide regulator of transcription. Trends Biochem. Sci. 2010, 35:315-322.
    • (2010) Trends Biochem. Sci. , vol.35 , pp. 315-322
    • Taatjes, D.J.1
  • 69
    • 79953713243 scopus 로고    scopus 로고
    • Molecular architecture of the human mediator-RNA polymerase II-TFIIF assembly
    • Bernecky C., Grob P., Ebmeier C.C., Nogales E., Taatjes D.J. Molecular architecture of the human mediator-RNA polymerase II-TFIIF assembly. PLoS Biol. 2011, 9:e1000603.
    • (2011) PLoS Biol. , vol.9
    • Bernecky, C.1    Grob, P.2    Ebmeier, C.C.3    Nogales, E.4    Taatjes, D.J.5
  • 70
    • 79952259195 scopus 로고    scopus 로고
    • Fixing the model for transcription: the DNA moves, not the polymerase
    • Papantonis A., Cook P.R. Fixing the model for transcription: the DNA moves, not the polymerase. Transcription 2011, 2:41-44.
    • (2011) Transcription , vol.2 , pp. 41-44
    • Papantonis, A.1    Cook, P.R.2
  • 71
    • 0034626731 scopus 로고    scopus 로고
    • A transcription reinitiation intermediate that is stabilized by activator
    • Yudkovsky N., Ranish J.A., Hahn S. A transcription reinitiation intermediate that is stabilized by activator. Nature 2000, 408:225-229.
    • (2000) Nature , vol.408 , pp. 225-229
    • Yudkovsky, N.1    Ranish, J.A.2    Hahn, S.3
  • 72
    • 34548219406 scopus 로고    scopus 로고
    • A transcription-independent role for TFIIB in gene looping
    • Singh B.N., Hampsey M. A transcription-independent role for TFIIB in gene looping. Mol. Cell 2007, 27:806-816.
    • (2007) Mol. Cell , vol.27 , pp. 806-816
    • Singh, B.N.1    Hampsey, M.2
  • 73
    • 69949173145 scopus 로고    scopus 로고
    • Gene looping is conferred by activator-dependent interaction of transcription initiation and termination machineries
    • El Kaderi B., Medler S., Raghunayakula S., Ansari A. Gene looping is conferred by activator-dependent interaction of transcription initiation and termination machineries. J. Biol. Chem. 2009, 284:25015-25025.
    • (2009) J. Biol. Chem. , vol.284 , pp. 25015-25025
    • El Kaderi, B.1    Medler, S.2    Raghunayakula, S.3    Ansari, A.4
  • 74
    • 84872424651 scopus 로고    scopus 로고
    • The Spt4-Spt5 complex: A multi-faceted regulator of transcription elongation
    • (this issue)
    • Hartzog G.A., Fu J. The Spt4-Spt5 complex: A multi-faceted regulator of transcription elongation. Biochim. Biophys. Acta 2013, 1829:105-115. (this issue).
    • (2013) Biochim. Biophys. Acta , vol.1829 , pp. 105-115
    • Hartzog, G.A.1    Fu, J.2
  • 75
    • 84872405841 scopus 로고    scopus 로고
    • Dynamic phosphorylation patterns of RNA polymerase II CTD during transcription
    • (this issue)
    • Heidemann M., Hintermair C., Voß K., Eick D. Dynamic phosphorylation patterns of RNA polymerase II CTD during transcription. Biochim. Biophys. Acta 2013, 1829:55-62. (this issue).
    • (2013) Biochim. Biophys. Acta , vol.1829 , pp. 55-62
    • Heidemann, M.1    Hintermair, C.2    Voß, K.3    Eick, D.4
  • 76
    • 84872376792 scopus 로고    scopus 로고
    • The Mediator complex and transcription elongation
    • (this issue)
    • Conaway R.C., Conaway J.W. The Mediator complex and transcription elongation. Biochim. Biophys. Acta 2013, 1829:69-75. (this issue).
    • (2013) Biochim. Biophys. Acta , vol.1829 , pp. 69-75
    • Conaway, R.C.1    Conaway, J.W.2
  • 77
    • 84872398471 scopus 로고    scopus 로고
    • The control of elongation by the yeast Ccr4-Not complex
    • (this issue)
    • Reese J.C. The control of elongation by the yeast Ccr4-Not complex. Biochim. Biophys. Acta 2013, 1829:127-133. (this issue).
    • (2013) Biochim. Biophys. Acta , vol.1829 , pp. 127-133
    • Reese, J.C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.