Natural variation of the root morphological response to nitrate supply in Arabidopsis thaliana

Mechanisms of Development

Volumn 130, Issue 1, 2013, Pages 45-53

  De Pessemier, Jérôme ^a   Chardon, Fabien ^b   Juraniec, Michal ^a   Delaplace, Pierre ^c   Hermans, Christian ^a  

^a UNIVERSITÉ LIBRE DE BRUXELLES   (Belgium)

^b INSTITUT JEAN PIERRE BOURGIN   (France)

^c UNIVERSITY OF LIÈGE   (Belgium)

Author keywords

Arabidopsis; Mineral nutrition; Natural populations; Nitrogen; Root architecture; Root development

Indexed keywords

NITRATE;

ADAPTATION; AGAR MEDIUM; ARABIDOPSIS; ARTICLE; BIOMASS PRODUCTION; CONCENTRATION (PARAMETERS); CONTROLLED STUDY; GENETIC TRAIT; GENETIC VARIABILITY; GENOTYPE; NONHUMAN; NUTRIENT AVAILABILITY; NUTRITIONAL STATUS; PHENOTYPE; PLANT GROWTH; PLANT ROOT; PRIORITY JOURNAL; ROOT DEVELOPMENT; ROOT MORPHOLOGY; SHOOT;

ARABIDOPSIS; BIOMASS; GENETIC VARIATION; NITRATES; NITROGEN; PHENOTYPE; PLANT ROOTS; PLANT SHOOTS; SOIL;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 84872371236     PISSN: 09254773     EISSN: 18726356     Source Type: Journal    
DOI: 10.1016/j.mod.2012.05.010     Document Type: Article

References (48)

1. Armengaud P., Zambaux K., Hills A., Sulpice R., Pattison R.J., Blatt M.R., Amtmann A. EZ-Rhizo: integrated software for fast and accurate measurement of root system architecture. Plant J. 2009, 57:945-956.
2. Bouchabke O., Chang F.Q., Simon M., Voisin R., Pelletier G., Durand-Tardif M. Natural variation in Arabidopsis thaliana as a tool for highlighting differential drought responses. PLoS ONE 2008, 3:e1705.
3. Castaings L., Marchive C., Meyer C., Krapp A. Nitrogen signaling in Arabidopsis: how to obtain insights into a complex signaling network. J. Exp. Bot. 2011, 62:1391-1397.
4. Chardon F., Barthélémy J., Daniel-Vedele F., Masclaux-Daubresse C. Natural variation of nitrate uptake and nitrogen use efficiency in Arabidopsis thaliana cultivated with limiting and ample nitrogen supply. J. Exp. Bot. 2010, 61:2293-2302.
5. Chardon F., Noël V., Masclaux-Daubresse C. Exploring NUE in crops and in Arabidopsis ideotypes to improve yield and seed quality. J. Exp. Bot. 2012, 63:3401-3412.
6. Chevalier F., Pata M., Nacry P., Doumas P., Rossignol M. Effects of phosphate availability on the root system architecture: large-scale analysis of the natural variation between Arabidopsis accessions. Plant Cell Environ. 2003, 26:1839-1850.
7. Chevalier F., Rossignol M. Proteomic analysis of Arabidopsis thaliana ecotypes with contrasted root architecture, in response to phosphate efficiency. J. Plant Physiol. 2011, 168:1885-1890.
8. Crawford N.M. Nitrate: nutrient and signal for plant growth. Plant Cell. 1995, 7:859-868.
9. Den Herder G., Van Isterdael G., Beeckman T., De Smet I. The roots of a new green revolution. Trends Plant Sci. 2010, 15:600-607.
10. Donner S.D., Kucharik C.J. Corn-based ethanol production compromises goal of reducing nitrogen export by the Mississippi River. Proc. Natl. Acad. Sci. USA 2008, 105:4513-4518.
11. Edgerton M.D. Increasing crop productivity to meet global needs for feed, food, and fuel. Plant Physiol. 2009, 149:7-13.
12. Frink C.R., Waggoner P.E., Ausubel J.H. Nitrogen fertilizer: retrospect and prospect. Proc. Natl. Acad. Sci. USA 1999, 96:1175-1180.
13. Gewin V. An underground revolution. Nature 2010, 466:552-553.
14. Giehl R.F.H., Lima J.E., von Wirén N. Localized iron supply triggers lateral root elongation in Arabidopsis by altering the AUX1-mediated auxin distribution. Plant Cell 2012, 24:33-49.
15. Gifford M.L., Dean A., Gutierrez R.A., Coruzzi G.M., Birnbaum K.D. Cell-specific nitrogen responses mediate developmental plasticity. Proc. Natl. Acad. Sci. USA 2008, 105:803-808.
16. Girin T., El-Kafafi E.-S., Widiez T., Erban A., Hubberten H.-M., Kopka J., Hoefgen R., Gojon A., Lepetit M. Identification of Arabidopsis mutants impaired in the systemic regulation of root nitrate uptake by the nitrogen status of the plant. Plant Physiol. 2010, 153:1250-1260.
17. Good A.G., Shrawat A.K., Muench D.G. Can less yield more? Is reducing nutrient input into the environment compatible with maintaining crop production?. Trends Plant Sci. 2004, 9:597-605.
18. Hermans C., Hammond J.P., White P.J., Verbruggen N. How do deficiencies of essential mineral elements alter biomass allocation?. Trends Plant Sci. 2006, 11:610-617.
19. Hermans C., Porco S., Verbruggen N., Bush D.R. Chitinase-like protein CTL1 plays a role in altering root system architecture in response to multiple environmental conditions. Plant Physiol. 2010, 152:904-917.
20. Hermans C., Porco S., Vandenbussche F., Gille S., De Pessemier J., Van Der Straeten D., Verbuggen N., Bush D.R. Dissecting the role of CTL1 in nitrate-dependent changes in root architecture. Plant Physiol. 2011, 157:1313-1326.
21. Ikram S., Bedu M., Daniel-Vedele F., Chaillou S., Chardon F. Natural variation of Arabidopsis response to nitrogen availability. J. Exp. Bot. 2012, 63:91-105.
22. Kant S., Bi Y.M., Rothstein S.J. Understanding plant response to nitrogen limitation for the improvement of crop nitrogen use efficiency. J. Exp. Bot. 2011, 62:1499-1509.
23. Krouk G., Lacombe B., Bielach A., Perrine-Walker F., Malinska K., Mounier E., Hoyerova K., Tillard P., Leon S., Ljung K., Zazimalova E., Benkova E., Nacry P., Gojon A. Nitrate-regulated auxin transport by NRT1.1 defines a mechanism for nutrient sensing in plants. Develop. Cell 2010, 18:927-937.
24. Krouk G., Ruffel S., Gutiérrez R.A., Gojon A., Crawford N.M., Coruzzi G.M., Lacombe B. A framework integrating plant growth with hormones and nutrients. Trends Plant Sci. 2011, 16:178-182.
25. Linkohr B.I., Williamson L.C., Fitter A.H., Leyser H.M.O. Nitrate and phosphate availability and distribution have different effects on root system architecture of Arabidopsis. Plant J. 2002, 29:751-760.
26. Little D.Y., Rao H., Oliva S., Daniel-Vedele F., Krapp A., Malamy J.E. The putative high-affinity nitrate transporter NRT2.1 represses lateral root initiation in response to nutritional cues. Proc. Natl. Acad. Sci. USA 2005, 102:13693-13698.
27. Loudet O., Chaillou S., Merigout P., Talbotec J., Daniel-Vedele F. Quantitative trait loci analysis of nitrogen use efficiency in Arabidopsis. Plant Physiol. 2003, 131:345-358.
28. López-Bucio J., Cruz-Ram-rez A., Herrera-Estrella L. The role of nutrient availability in regulating root architecture. Curr. Opin. Plant Biol. 2003, 6:280-287.
29. Masclaux-Daubresse C., Chardon F. Exploring nitrogen remobilization for seed filling using natural variation in Arabidopsis thaliana. J. Exp. Bot. 2011, 62:2131-2142.
30. Masclaux-Daubresse C., Daniel-Vedele F., Dechorgnat J., Chardon F., Gaufichon L., Suzuki A. Nitrogen uptake, assimilation and remobilization in plants: challenges for sustainable and productive agriculture. Ann. Bot. 2010, 105:1141-1157.
31. McKhann H., Camilleri C., Berard A., Bataillon T., David J., Reboud X., Le Corre V., Caloustian C., Gut I., Brunel D. Nested core collections maximizing genetic diversity in Arabidopsis thaliana. Plant J. 2004, 38:193-202.
32. McKhann H., Gery C., Berard A., Leveque S., Zuther E., Hincha D., De Mita S., Brunel D., Teoule E. Natural variation in CBF gene sequence, gene expression and freezing tolerance in the Versailles core collection of Arabidopsis thaliana. BMC Plant Biol. 2008, 8:105.
33. Miller A., Smith S., Fan X., Shen Q. Expression and functional analysis of rice NRT2 nitrate transporters. Comp. Biochem. Physiol. 2007, 146:S241.
34. North K.A., Ehlting B., Koprivova A., Rennenberg H., Kopriva S. Natural variation in Arabidopsis adaptation to growth at low nitrogen conditions. Plant Physiol. Biochem. 2009, 47:912-918.
35. Péret B., De Rybel B., Casimiro I., Benkova E., Swarup R., Laplaze L., Beeckman T., Bennett M.J. Arabidopsis lateral root development: an emerging story. Trends Plant Sci. 2009, 14:399-408.
36. Poorter H., Niklas K.J., Reich P.B., Oleksyn J., Poot P., Mommer L. Biomass allocation to leaves, stems and roots: meta-analyses of interspecific variation and environmental control. New Phytol. 2012, 193:30-50.
37. Rauh B.L., Basten C., Buckler E.S. Quantitative trait loci analysis of growth response to varying nitrogen sources in Arabidopsis thaliana. Theor. Appl. Genet. 2002, 104:743-750.
38. Remans T., Nacry P., Pervent M., Filleur S., Diatloff E., Mounier E., Tillard P., Forde B.G., Gojon A. The Arabidopsis NRT1.1 transporter participates in the signaling pathway triggering root colonization of nitrate-rich patches. Proc. Natl. Acad. Sci. USA 2006, 103:19206-19211.
39. Robinson D. Scaling the depths: below-ground allocation in plants, forests and biomes. Funct. Ecol. 2004, 18:290-295.
40. Rubio-Somoza I., Weigel D. Micro RNA networks and development plasticity in plants. Trends Plant Sci. 2011, 16:258-264.
41. Ruffel S., Krouk G., Ristova D., Shasha D., Birnbaum K.D., Coruzzi G.M. Nitrogen economics of root foraging: transitive closure of the nitrate-cytokinin relay and distinct systemic signaling for N supply vs. demand. Proc. Natl. Acad. Sci. USA 2011, 108:18524-18529.
42. Shannon P., Markiel A., Ozier O., Baliga N., Wang J., Ramage D., Amin N., Schwikowski B., Ideker T. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 2003, 13:2498-2504.
43. Vaughn L.M., Masson P.H. A QTL study for regions contributing to Arabidopsis thaliana root skewing on tilted surfaces. G3: Genes, Genomes, Genetics 2011, 1:105-115.
44. Vidal E.A., Tamayo K.P., Gutiérrez R.A. Gene networks for nitrogen sensing, signaling, and response in Arabidopsis thaliana. Wiley Interdiscip. Rev. Syst. Biol. Med. 2010, 2:683-693.
45. Zhang H., Forde B.G. An Arabidopsis MADS box gene that controls nutrient-induced changes in root architecture. Science 1998, 279:407-409.
46. Zhang H., Jennings A., Barlow P.W., Forde B.G. Dual pathways for regulation of root branching by nitrate. Proc. Natl. Acad. Sci. USA 1999, 96:6529-6534.
47. Zhang H., Forde B.G. Regulation of Arabidopsis root development by nitrate availability. J. Exp. Bot. 2000, 51:51-59.
48. Zolla G., Heimer Y.M., Barak S. Mild salinity stimulates a stress-induced morphogenic response in Arabidopsis thaliana roots. J. Exp. Bot. 2010, 61:211-224.