Natural variation in Arabidopsis adaptation to growth at low nitrogen conditions

Plant Physiology and Biochemistry

Volumn 47, Issue 10, 2009, Pages 912-918

  North, Kathryn Anne ^a   Ehlting, Barbara ^b   Koprivova, Anna ^a   Rennenberg, Heinz ^b   Kopriva, Stanislav ^a  

^a JOHN INNES CENTRE   (United Kingdom)

^b UNIVERSITY OF FREIBURG   (Germany)

Author keywords

Arabidopsis; Natural variation; Nitrate assimilation; Nitrogen; Nutrient use efficiency

Indexed keywords

AMINO ACID; ANION TRANSPORT PROTEIN; ARABIDOPSIS PROTEIN; ATNRT2.1 PROTEIN, ARABIDOPSIS; CALCIUM DERIVATIVE; CALCIUM NITRATE; MESSENGER RNA; NITRATE; NITRATE REDUCTASE; NITRITE REDUCTASE;

ADAPTATION; ARABIDOPSIS; ARTICLE; DRUG EFFECT; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; METABOLISM; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SPECIES DIFFERENCE;

ADAPTATION, PHYSIOLOGICAL; AMINO ACIDS; ANION TRANSPORT PROTEINS; ARABIDOPSIS; ARABIDOPSIS PROTEINS; CALCIUM COMPOUNDS; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; GENE EXPRESSION REGULATION, PLANT; NITRATE REDUCTASE; NITRATES; NITRITE REDUCTASES; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, MESSENGER; SPECIES SPECIFICITY;

ARABIDOPSIS;

EID: 68149160193     PISSN: 09819428     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.plaphy.2009.06.009     Document Type: Article

References (41)

1. Pretty J. Agricultural sustainability: concepts, principles and evidence. Phil. Trans. R. Soc. B Biol. Sci. 363 (2008) 447-465
2. Gallais A., and Hirel B. An approach to the genetics of nitrogen use efficiency in maize. J. Exp. Bot 55 (2004) 295-306
3. Shenoy V.V., and Kalagudi G.M. Enhancing plant phosphorus use efficiency for sustainable cropping. Biotechnol. Adv. 23 (2005) 501-513
4. Richard-Molard C., Krapp A., Brun F., Ney B., Daniel-Vedele F., and Chaillou S. Plant response to nitrate starvation is determined by N storage capacity matched by nitrate uptake capacity in two Arabidopsis genotypes. J. Exp. Bot 59 (2008) 779-791
5. Siddiqi M.Y., and Glass D.M. Utilization index: a modified approach to the estimation and comparison of nutrient utilization efficiency in plants. J. Plant Nutr. 4 (1981) 289-302
6. Moll R.H., Kamprath E.J., and Jackson W.A. Analysis and interpretation of factors which contribute to efficiency of nitrogen utilization. Agron. J. 74 (1982) 562-564
7. Craswell E.T., and Godwin D.C. The efficiency of nitrogen fertilizers applied to cereals grown in different climates. In: Tinker P.B., and Lauchli A. (Eds). Advances in plant nutrition vol. 1 (1984), Praeger Publishers, New York 1-55
8. Good A.G., Shrawat A.K., and Muench D.G. Can less yield more? Is reducing nutrient input into the environment compatible with maintaining crop production?. Trends Plant Sci. 9 (2004) 597-605
9. Rengel Z., and Marschner P. Nutrient availability and management in the rhizosphere: exploiting genotypic differences. New Phytol. 168 (2005) 305-312
10. Hirel B., Le Gouis J., Ney B., and Gallais A. The challenge of improving nitrogen use efficiency in crop plants: towards a more central role for genetic variability and quantitative genetics within integrated approaches. J. Exp. Bot. 58 (2007) 2369-2387
11. Lejay L., Tillard P., Lepetit M., Olive F., Filleur S., Daniel-Vedele F., and Gojon A. Molecular and functional regulation of two NO3- uptake systems by N- and C-status of Arabidopsis plants. Plant J. 18 (1999) 509-519
12. Zhang H., and Forde B.G. Regulation of Arabidopsis root development by nitrate availability. J. Exp. Bot. 51 (2000) 51-59
13. Nikiforova V., Freitag J., Kempa S., Adamik M., Hesse H., and Hoefgen R. Transcriptome analysis of sulfur depletion in Arabidopsis thaliana: interlacing of biosynthetic pathways provides response specificity. Plant J. 33 (2003) 633-650
14. Hirai M.Y., Klein M., Fujikawa Y., Yano M., Goodenowe D.B., Yamazaki Y., Kanaya S., Nakamura Y., Kitayama M., Suzuki H., Sakurai N., Shibata D., Tokuhisa J., Reichelt M., Gershenzon J., Papenbrock J., and Saito K. Elucidation of gene-to-gene and metabolite-to-gene networks in Arabidopsis by integration of metabolomics and transcriptomics. J. Biol. Chem. 280 (2005) 25590-25595
15. Hammond J.P., Broadley M.R., and White P.J. Genetic responses to phosphorus deficiency. Ann. Bot. 94 (2004) 323-332
16. Loudet O., Chaillou S., Merigout P., Talbotec J., and Daniel-Vedele F. Quantitative trait loci analysis of nitrogen use efficiency in Arabidopsis. Plant Physiol. 131 (2003) 345-358
17. Vreugdenhil D., Aarts M.G.M., Koornneef M., Nelissen H., and Ernst W.H.O. Natural variation and QTL analysis for cationic mineral content in seeds of Arabidopsis thaliana. Plant Cell Environ. 27 (2004) 828-839
18. Koornneef M., Alonso-Blanco C., and Vreugdenhil D. Naturally occurring genetic variation in Arabidopsis thaliana. Annu. Rev. Plant Biol. 55 (2004) 141-172
19. Hirel B., Bertin P., Quilleré I., Bourdoncle W., Attagnant C., Dellay C., Gouy A., Cadiou S., Retailliau C., Falque M., and Gallais A. Towards a better understanding of the genetic and physiological basis for nitrogen use efficiency in maize. Plant Physiol. 125 (2001) 1258-1270
20. Habash D.Z., Bernard S., Schondelmaier J., Weyen J., and Quarrie S.A. The genetics of nitrogen use in hexaploid wheat: N utilisation, development and yield. Theor. Appl. Genet. 114 (2007) 403-419
21. Rauh L., Basten C., and Buckler IV S. Quantitative trait loci analysis of growth response to varying nitrogen sources in Arabidopsis thaliana. Theor. Appl. Gen. 104 (2002) 743-750
22. Svistoonoff S., Creff A., Reymond M., Sigoillot-Claude C., Ricaud L., Blanchet A., Nussaume L., and Desnos T. Root tip contact with low-phosphate media reprograms plant root architecture. Nature Gen. 39 (2007) 792-796
23. Loudet O., Saliba-Colombani V., Camilleri C., Calenge F., Gaudon V., Koprivova A., North K.A., Kopriva S., and Daniel-Vedele F. Natural variation for sulfate content in Arabidopsis is highly controlled by adenosine 5'-phosphosulfate reductase. Nature Gen. 39 (2007) 896-900
24. Bartels A., Mock H.P., and Papenbrock J. Differential expression of Arabidopsis sulfurtransferases under various growth conditions. Plant Physiol. Biochem. 45 (2007) 178-187
25. Koprivova A., North K.A., and Kopriva S. Complex signaling network in regulation of sulfate assimilation by salt stress in Arabidopsis roots. Plant Physiol. 146 (2008) 1408-1420
26. López-Bucio J., Cruz-Ramírez A., and Herrera-Estrella L. The role of nutrient availability in regulating root architecture. Curr. Opin. Plant Biol. 6 (2003) 280-287
27. Mitchell-Olds T., and Schmitt J. Genetic mechanisms and evolutionary significance of natural variation in Arabidopsis. Nature 441 (2006) 947-952
28. Bentsink L., Yuan K., Koornneef M., and Vreugdenhil D. The genetics of phytate and phosphate accumulation in seeds and leaves of Arabidopsis thaliana, using natural variation. Theor. Appl. Gen. 106 (2003) 1234-1243
29. Harada H., and Leigh R.A. Genetic mapping of natural variation in potassium concentrations in shoots of Arabidopsis thaliana. J. Exp. Bot. 57 (2006) 953-960
30. Kliebenstein D.J., Kroymann J., Brown P., Figuth A., Pedersen D., Gershenzon J., and Mitchell-Olds T. Genetic control of natural variation in Arabidopsis glucosinolate accumulation. Plant Physiol. 126 (2001) 811-825
31. Zhen Y., and Ungerer M.C. Clinal variation in freezing tolerance among natural accessions of Arabidopsis thaliana. New Phytol. 177 (2008) 419-427
32. Kover P.X., and Schaal B.A. Genetic variation for disease resistance and tolerance among Arabidopsis thaliana accessions. Proc. Natl. Acad. Sci. U.S.A. 99 (2002) 11270-11274
33. Chen W.J., Chang S.H., Hudson M.E., Kwan W.K., Li J., Estes B., Knoll D., Shi L., and Zhu T. Contribution of transcriptional regulation to natural variations in Arabidopsis. Gen. Biol. 6 (2005) R32
34. van Leeuwen H., Kliebenstein D.J., West M.A., Kim K., van Poecke R., Katagiri F., Michelmore R.W., Doerge R.W., and St Clair D.A. Natural variation among Arabidopsis thaliana accessions for transcriptome response to exogenous salicylic acid. Plant Cell 19 (2007) 2099-2110
35. Lian X., Xing Y., Yan H., Xu C., Li X., and Zhang Q. QTLs for low nitrogen tolerance at seedling stage identified using a recombinant inbred line population derived from an elite rice hybrid. Theor. Appl. Gen. 112 (2005) 85-96
36. Wang R., Guegler K., LaBrie S.T., and Crawford N.M. Genomic analysis of a nutrient response in Arabidopsis reveals diverse expression patterns and novel metabolic and potential regulatory genes induced by nitrate. Plant Cell 12 (2000) 1491-1509
37. Scheible W.R., Morcuende R., Czechowski T., Fritz C., Osuna D., Palacios-Rojas N., Schindelasch D., Thimm O., Udvardi M.K., and Stitt M. Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, cellular growth processes, and the regulatory infrastructure of Arabidopsis in response to nitrogen. Plant Physiol. 136 (2004) 2483-2499
38. Bi Y.M., Wang R.L., Zhu T., and Rothstein S.J. Global transcription profiling reveals differential responses to chronic nitrogen stress and putative nitrogen regulatory components in Arabidopsis. BMC Genomics 8 (2007) 281
39. Peng M.S., Hannam C., Gu H.L., Bi Y.M., and Rothstein S.J. A mutation in NLA, which encodes a RING-type ubiquitin ligase, disrupts the adaptability of Arabidopsis to nitrogen limitation. Plant J. 50 (2007) 320-337
40. Agrama H.A.S., Zakaria A.G., Said F.B., and Tuinstra M. Identification of quantitative trait loci for nitrogen use efficiency in maize. Mol. Breed. 5 (1999) 187-195
41. Cookson S.J., Williams L.E., and Miller A.J. Light-dark changes in cytosolic nitrate pools depend on nitrate reductase activity in Arabidopsis leaf cells. Plant Physiol. 138 (2005) 1097-1105