Microfluidic applications of functionalized magnetic particles for environmental analysis: Focus on waterborne pathogen detection

Microfluidics and Nanofluidics

Volumn 13, Issue 4, 2012, Pages 529-542

  Ramadan, Qasem ^a   Gijs, Martin A M ^a  

^a EPFL   (Switzerland)

Author keywords

Hysterosalpingography; Intracervical block; Verbal descriptive score; Visual analog scale

Indexed keywords

ANALYTES; BIOLOGICAL DETECTION; CURRENT TECHNOLOGY; DETECTION SYSTEM; DETECTION VOLUME; DIAGNOSTIC ASSAYS; EARLY WARNING; ENVIRONMENTAL ANALYSIS; FUNCTIONALIZED; HYSTEROSALPINGOGRAPHY; IMMUNOMAGNETIC SEPARATION; INHIBITING FACTORS; INTEGRATED SYSTEMS; INTRACERVICAL BLOCK; LOW CONCENTRATIONS; MAGNETIC PARTICLE; MICRO FLUIDIC APPLICATIONS; PATHOGEN DETECTION; VERBAL DESCRIPTIVE SCORE; VISUAL ANALOG SCALE; WATER QUALITY MONITORING; WATER-BORNE PATHOGENS;

MAGNETISM; MICROFLUIDICS; NUCLEIC ACIDS; PATHOGENS; WATER QUALITY;

MAGNETIC BUBBLES;

EID: 84871808381     PISSN: 16134982     EISSN: 16134990     Source Type: Journal    
DOI: 10.1007/s10404-012-1041-4     Document Type: Article

References (87)

1. Alonso JL, Amoros I, Canigral I (2001) Development and evaluation of a real-time PCR assay for quantification of Giardia and Cryptosporidium in sewage samples. Appl Microbiol Biotechnol 89:1203-1211
2. Aw TG, Rose JB (2011) Detection of pathogens in water: from phylochips to qPCR to pyrosequencing. Cur Opin Biotechnol 23:1-9
3. Behets J, Declerck P, Delaedt Y, Verelst L, Ollevier F (2007) A duplex real-time PCR assay for the quantitative detection of Naegleria Fowleri in water samples. Water Res 41:118-126
4. Beyor N, Seo TS, Liu P, Mathies RA (2008) Immunomagnetic beadbased cell concentration microdevice for dilute pathogen detection. Biomed Microdevices 10:909-917
5. Beyor N, Yi L, Seo TS, Richard A (2009) Mathies. Integrated capture, concentration, polymerase chain reaction, and capillary electrophoretic analysis of pathogens on a chip. Anal Chem 81:3523-3528
6. Boehm DA, Gottlieb PA, Hua SZ (2007) On-chip microfluidic biosensors for bacterial detection and identification. Sens Actuat B 126:508-514
7. Bouzid M, Steverding D, Tyler MK (2008) Detection and surveillance of waterborne protozoan parasites. Curr Opin Biotechnol 19:1-5
8. Brooks BW, Devenish J, Lutze-Wallace CL, Milnes D, Robertson RH, Berlie-Surujballi G (2004) Evaluation of a monoclonal antibody-based enzyme-linked immunosorbent assay for detection of Campylobacter fetus in bovine preputial washing and vaginal mucus samples. Vet Microbiol 103:77-84
9. Cady NC, Stelick S, Kunnavakkam MV, Batt CA (2005) Real-time PCR detection of Listeria monocytogenes using an integrated microfluidics platform. Sens Actuat B 107:332-341
10. Campbell GA, Mutharasan R (2008) Near real-time detection of Cryptosporidium parvum oocyst by IgM-functionalized piezoelectric- excited millimeter-sized cantilever biosensor. Biosens Bioelectron 23:1039-1045
11. Chandler DP, Brown J, Call DR, Grate JW, Holman DA, Olson L, Stottlemyer MS (2000) Continuous, automated immunomagnetic separation and microarray detection of E. coli O157:H7 from poultry carcass rinse. Int J Food Microbiol 70:143-154
12. Chang WH, Yang SY, Wang CH, Tsai MA, Wang PC, Chen TY, Chen SC, Lee GB (2012) Rapid isolation and detection of aquaculture pathogens in an integrated microfluidic system using loop-mediated isothermal amplification. Sens Actuat B. doi: 10.1016/j.snb.2011.12.054
13. Chemla YR, Grossman HL, Poon Y, McDermott R, Stevens R, Alper MD, Clarke J (2000) Ultrasensitive magnetic biosensor for homogeneous immunoassay. PNAS 97:14268-14272
14. Chen G, Lin Y, Wang J (2006) Monitoring environmental pollutants by microchip capillary electrophoresis with electrochemical detection. Talanta 68:497-503
15. Cheng VCC, Yew WW, Yuen KY (2005) Molecular diagnostic in turberculosis. Eur J Clin Microbiol Infect Dis 24:711-720
16. Cheng XH, Liu YS, Irimia D, Demirci U, Yang L, Zamir L, Rodríguez WR, Toner Mand Bashir R (2007) Cell detection and counting through cell lysate impedance spectroscopy in microfluidic devices. Lab Chip 7:746-755
17. Deisingh AK, Thompson M (2004) Strategies for the detection of Escherichia coli O157:H7 in foods. J Appl Microbiol 96:419-429
18. Ferrari BC, Stoner K, Bergquist PL (2006) Applying fluorescence based technology to the recovery and isolation of Cryptosporidium and Giardia from industrial wastewater streams. Water Res 40:541-548
19. Fu Z, Rogelj S, Kieft TL (2005) Rapid detection of Escherichia coli O157:H7 by immunomagnetic separation and real-time PCR. Int J Food Microbiol 99:47-57
20. Gerba CP (1996) Pathogens in the environment. In: Brusseau ML, Pepper IL, Gerba CP (eds) Pollution science. Academic Press, New York, pp 279-299
21. Gijs MAM (2004) Magnetic bead handling on-chip: new opportunities for analytical applications. Microfluid Nanofluid 1:22-40
22. Gijs MAM, Lacharme F, Lehmann U (2010) Microfluidic applications of magnetic particles for biological analysis and catalysis. Chem Rev 110:1518-1563
23. Grossman HL, Myers WR, Vreeland VJ, Bruehl R, Alper MD, Bertozzi CR, Clarke J (2004) Detection of bacteria in suspension by using a superconducting quantum interference device. PNAS 101:129-134 http://www.epa.gov/microbes/ 1623de05.pdf
24. Hudson JA, Lake RJ, Savill MG, Scholes P, McCormick RE (2001) Rapid detection of Listeria monocytogenes in ham samples using immunomagnetic separation followed by polymerase chain reaction. J Appl Microbiol 90:614-621
25. Jofré A, Martin B, Garriga M, Hugas M, Pla M, Rodríguez- Lázaro D, Aymerich T (2005) Simultaneous detection of Listeria monocytogenes and Salmonella by multiplex PCR in cooked ham. Food Microbiol 22:109-115
26. Jokerst JC, Emory JM, Henry CS (2012) Advances in microfluidics for environmental analysis. Analyst 137:24-34
27. Kaittanis C, Naser SA, Perez JM (2007) One-step, nanoparticlemediated bacterial detection with magnetic relaxation. Nano Lett 7:380-383
28. Kaittanis C, Santra S, Perez JM (2010) Emerging nanotechnologybased strategies for the identification of microbial pathogenesis. Adv Drug Deliver Rev 62:408-423
29. Karanis P, Kourenti C, Smith H (2007) Waterborne transmission of protozoan parasites: a worldwide review of outbreaks and lessons learnt. J Water Health 5:1-38
30. Kramer MF, Vesey G, Look NL, Herbert BR, Simpson-Stroot JM, Lim DV (2007) Development of a Cryptosporidium oocyst assay using an automated fiber optic-based biosensor. J Biol Eng 1:3
31. Lazcka O, Del Campo FJ, Munoz FX (2007) Pathogen detection. A perspective of traditional methods and biosensors. Biosen Bioelect 22:1205-1217
32. LeBlanc N, Gantelius J, Schwenk JM, Stahl K, Blomberg J, Andersson-Svahn H, Belaka S (2009) Development of a magnetic bead microarray for simultaneous and simple detection of four pestiviruses. J Virol Meth 155:1-9
33. Lee H, Sun E, Ham D, Weissleder R (2008) Chip-NMR biosensor for detection and molecular analysis of cells. Nat Med 14:869-874
34. Lien KY, Hung LY, Huang TB, Tsai YC, Lei HY, Lee GB (2011) Rapid detection of influenza A virus infection utilizing an immunomagnetic bead-based microfluidic system. Biosens Bioelectron 26:3900-3907
35. Lin CC, Chen A, Lin CH (2008) Microfluidic cell counter/sorter utilizing multiple particle tracing technique and optically switching approach. Biomed Microdevices 10:55-63
36. Liu WT, Zhu L (2005) Environmental microbiology-on-a-chip and its future impacts. Trends Biotechnol 23:174-179
37. Mairhofer J, Roppert K, Ertl P (2009) Microfluidic systems for pathogen sensing: a review. Sensors 9:4804-4823
38. Mandal PK, Biswas AK, Choi K, Pal UK (2011) Methods for rapid detection of foodborne pathogens: an overview. Am J Food Technol 6:87-102
39. Mason HY, Lloyd C, Dice M, Sinclair R, Ellis W, Powers L (2003) Taxonomic identification of microorganisms by capture and intrinsic fluorescence detection. Biosens Bioelectron 18:521-527
40. Moser Y, Lehnert T, Gijs MAM (2009a) On-chip immuno-agglutination assay with analyte capture by dynamic manipulation of superparamagnetic beads. Lab Chip 9:3261-3267
41. Moser Y, Lehnert T, Gijs MAM (2009b) Quadrupolar magnetic actuation of superparamagnetic particles for enhanced microfluidic perfusion. Appl Phys Lett 94:022505
42. Mujikaa M, Arana S, Castano E, Tijero M, Vilares R, Ruano-López J, Cruzc A, Sainz L, Berganza J (2009) Magnetoresistive immunosensor for the detection of Escherichia coli O157:H7 including a microfluidic network. Biosens Bioelect 24:1253-1258
43. Mullis K, Faloona F, Scharf S, Saiki R, Horn G, Erlich H (1986) Specific enzymatic amplification of DNA in vitro: the polymerase chain reaction. In: Cold spring harbor symposia on quantitative biology, vol 51. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, pp 263-273
44. Mulvaney SP, Mattoussi HM, Whitman LJ (2004) Incorporating fluorescent dyes and quantum dots into magnetic microbeads for immunoassays. Biotechniques 36(4):602-606 (608-609)
45. Mulvaney SP, Cole CL, Kniller MD, Malito M, Tamanaha CR, Rife JC, Stanton MW, Whitman LJ (2007) Rapid, femtomolar bioassays in complex matrices combining microfluidics and magnetoelectronics. Biosens Bioelectron 23:191-200
46. Ongerth JE, Stibbs HH (1987) Identification of Cryptosporidium oocysts in river water. Appl Environ Microbiol 53:672-676
47. Palumbo JD, Borucki MK, Mandrell RE, Gorski L (2003) Serotyping of Listeria monocytogenes byenzyme-linked immunosorbent assay and identification of mixed-serotype cultures by colony immunoblotting. J Clin Microbiol 41:564-571
48. Ramadan Q (2009) Reversible assembly of magnetized particles: application to water-borne pathogen enumeration. J App Phys 106(124701):2009
49. Ramadan Q, Gijs MAM (2011) Simultaneous sample washing and concentration using a "trapping-and-releasing" mechanism of magnetic beads on a microfluidic chip. Analyst 136:1157-1166
50. Ramadan Q, Lau TT, Ho S (2010a) Magnetic-based purification system with simultaneous sample washing and concentration. Anal Bioanal Chem 396:707-714
51. Ramadan Q, Lay C, Teo W, Hua FH (2010b) Flow-through immunomagnetic separation system for waterborne pathogens isolation and detection: application to giardia and cryptosporidium cells isolation. Anal Chim Acta 673:101-108
52. Rettig JR, Folch A (2005) Large-scale single-cell trapping and imaging using microwell arrays. Anal Chem 77:5628-5634
53. Rida A, Gijs MAM (2004a) Dynamics of magnetically retained supraparticle structures in a liquid flow. Appl Phys Lett 85:4986-4988
54. Rida A, Gijs MAM (2004b) Manipulation of self-assembled structures of magnetic beads for microfluidic mixing and assaying. Anal Chem 76:6239-6246
55. Rider TH, Petrovick MS, Nargi RE, Harper JD, Schwoebel ED, Mathews RH, Blanchard DJ, Bortolin LT, Young AM, Chen J, Hollis MA (2003) A B cell-based sensor for rapid identification of pathogens. Science 301:213-215
56. Rife JC, Miller MM, Sheehan PE, Tamanaha CR, Tondra M, Whitman LJ (2003) Design and performance of GMR sensors for the detection of magnetic microbeads in biosensors. Sens Actuat A 107:209-218
57. Rodriguez WR, Christodoulides N, Floriano PN, Graham S, Mohanty S, Dixon M, Hsiang M, Peter T, Zavahir S, Thior I, Romanovicz D, Bernard B, Goodey AP, Walker BD, McDevitt JT (2005) A microchip CD4 counting method for HIV monitoring in resource-poor settings. PLoS Med 2:e182
58. Rodríguez-Lázaro D, D'Agostino M, Herrewegh A, Pla M, Cook N, Ikonomopoulos J (2005) Real-time PCR-based methods for detection of Mycobacterium avium subsp. paratuberculosis in water and milk. Int J Food Microbiol 101:93-104
59. Rotariu O, Ogden ID, MacRae M, Badescu V, Strachan NJC (2005a) A immunomagnetic separator for concentration of pathogenic micro-organisms from large volume samples. J Magnet Magnet Mater 293:589-596
60. Rotariu O, Ogden ID, MacRae M, Udrea LE, Strachan NJC (2005b) Multiple sample flow through immunomagnetic separator for concentrating pathogenic bacteria. Phys Med Biol 50:2967-2977
61. Rubina Y, Chen Z, Whitney H, Gwendolyn S, Montagna R (2010) Automatic and rapid molecular detection of E. coli and Enterococci in raw recreational water samples using the fully automated Rheonix CARD® Technology Platform. Great Lakes beach conference meeting, October 2010
62. Salyers AA, Whitt DD (2002) Bacterial pathogenesis: a molecular approach, 2nd edn. ASM Press, Washington, DC
63. Schafer DN, Gibson EA, Salim EA, Palmer AE, Jimenez R, Squier J (2009) Microfluidic cell counter with embedded optical fibers fabricated by femtosecond laser ablation and anodic bonding. Opt Express 17:6068-6073
64. Schwab KJ, DeLeon R, Sobsey MD (1996) Immunoaffinity concentration and purification of waterborne enteric viruses for detection by reverse transcriptase PCR. Appl Environ Microbiol 62:2086-2904
65. Setterington EB, Alocilja EC (2010) Rapid electrochemical detection of polyaniline-labeled Escherichia coli O157:H7. Biosens Bioelectron 26:2208-2214
66. Shepherd KM, Wyn-Jones AP (1996) An evaluation of methods for the simultaneous detection of Cryptosporidium oocysts and Giardia cysts from water. Appl Environ Microbiol 62:1317-1322
67. Shim WB, Choi JG, Kim JY, Yang ZY, Lee KH, Kim MG DO, Ha SD, Kim KS, Kim KY, Kim CH, Ha KS, Eremin SA, Chung AD (2007) Production of monoclonal antibody against Listeria monocytogenes and its application to immunochromatography strip test. J Microbiol Biotechnol 17:1152-1161
68. Sinha A, Ganguly R, Puri K (2009) Magnetic separation from superparamagnetic particle suspensions. J Magn Magn Mater 321:2251-2256
69. Stedtfeld RD, Baushke SW, Tourlousse DM, Miller SM, Stedtfeld TM, Gulari E, Tiedje JM, Hashsham SA (2008) Development and experimental validation of a predictive threshold cycle equation for quantification of virulence and marker genes by high-throughput nanoliter-volume PCR on the OpenArray Platform. Appl Environ Microbiol 74:3831-3838
70. Straub T, Chandler D (2003) Towards a unified system for detecting waterborne pathogens. J Microbiol Methods 53:185-197
71. Szewzyk U, Szewzyk R, Manz W, Schleifer KH (2000) Microbiological safety of drinking water. Annu Rev Microbiol 54:81-127
72. Tseng D, Mudanyali O, Oztoprak C, Isikman SO, Sencan I, Yagliderea O, Ozcan A (2010) Lensfree microscopy on a cellphone. Lab Chip 10:1787-1792
73. United States Environmental Protection Agency (1988) Comparative health effects assessment of drinking water. Washington, DC
74. Van Doorn R, Klerks MM, van Gent-Pelzer MPE, Speksnijder AGCL, Kowalchuk GA, Schoen CD (2009) Accurate quantification of microorganisms in PCR-inhibiting environmental DNA extracts by a novel internal amplification control approach using Biotrove OpenArrays. Appl Environ Microbiol 75:7253-7260
75. Velusamy V, Arshak K, Korostynska O, Oliwa K, Adley C (2010) An overview of foodborne pathogen detection: in the perspective of biosensors. Biotechnol Adv 28:232-254
76. Wang C, Irudayaraj J (2010) Multifunctional magnetic-optical nanoparticle probes for simultaneous detection, separation, and thermal ablation of multiple pathogens. Small 6:283-289
77. Wang YN, Kang Y, Xu D, Chan CH, Barnett L, Kalams SA, Lib D, Li DQ (2008) On-chip counting the number and the percentage of CD4 + T lymphocytes. Lab Chip 8:309-315
78. WHO (2011) Chapter 7: microbial aspect. Guidelines for drinkingwater quality. Edn 4
79. WHO Guidelines for drinking-water quality (2006) Vol 1 recommendations. World Health Organization, Geneva
80. Yang S, Rothman RE (2004) PCR-based diagnostics for infectious diseases: uses, limitations, and future applications in acute-care settings. Lancet Infect Dis 4:337-348
81. Yaron S, Matthews K (2002) A reverse transcriptase-polymerase chain reaction assay for detection of viable Escherichia coli O157:H7: investigation of specific target genes. J Appl Microbiol 92:633-640
82. Zarlenga DS, Trout JM (2004) Concentrating, purifying and detecting waterborne parasites. Veter Parasitol 126:195-217
83. Zaytseva NV, Goral VN, Montagna RA, Baeumner AJ (2005) Development of a microfluidic biosensor module for pathogen detection. Lab Chip 5:805-811
84. Zhang L, Xua J, Mi L, Gong H, Jiang S, Yu Q (2012) Multifunctional magnetic-plasmonic nanoparticles for fast concentration and sensitive detection of bacteria using SERS. Biosens Bioelect 31:130-136
85. Zhao W, Yao S, Hsing IM (2006) Microsystem compatible strategy for viable Escherichia coli detection. Biosens Bioelectron 21:1163-1170
86. Zhu H, Mavandadi S, Coskun AF, Yaglidere O, Ozcan A (2011a) Optofluidic fluorescent imaging cytometry on a cell phone. Anal Chem 83:6641-6647
87. Zhu H, Yaglidere O, Su TW, Tseng D, Ozcana A (2011b) Costeffective and compact wide-field fluorescent imaging on a cellphone. Lab Chip 11:315-322