Corrigendum: “DDB1 is a cellular substrate of NS3/4A protease and required for hepatitis C virus replication” (Virology (2013) 435(2) (385–394), (S0042682212005338), (10.1016/j.virol.2012.10.025));DDB1 is a cellular substrate of NS3/4A protease and required for hepatitis C virus replication

Virology

Volumn 435, Issue 2, 2013, Pages 385-394

  Kang, Xi ^a   Chen, Xi ^a   He, Ying ^b   Guo, Deyin ^a   Guo, Lin ^a   Zhong, Jin ^b   Shu, Hong Bing ^a  

^a WUHAN UNIVERSITY   (China)

^b INSTITUTE PASTEUR OF SHANGHAI   (China)

Author keywords

DDB1; HCV; NS3 4A; Replication

Indexed keywords

NONSTRUCTURAL PROTEIN 3; NONSTRUCTURAL PROTEIN 4A; PROTEIN DDB1; UBIQUITIN PROTEIN LIGASE; UNCLASSIFIED DRUG;

ARTICLE; GENE OVEREXPRESSION; HEPATITIS C VIRUS; HOST CELL; HUMAN; HUMAN CELL; LIFE CYCLE; MASS SPECTROMETRY; MUTAGENESIS; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN CLEAVAGE; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION; PROTEIN PURIFICATION; VIRUS REPLICATION;

HEPATITIS C VIRUS;

EID: 84871672043     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2021.01.013     Document Type: Erratum

References (48)

1. Andrejeva J., Poole E., Young D.F., Goodbourn S., Randall R.E. The p127 subunit (DDB1) of the UV-DNA damage repair binding protein is essential for the targeted degradation of STAT1 by the V protein of the paramyxovirus simian virus 5. J. Virol 2002, 76(22):11379-11386.
2. Andrejeva J., Young D.F., Goodbourn S., Randall R.E. Degradation of STAT1 and STAT2 by the V proteins of simian virus 5 and human parainfluenza virus type 2, respectively: consequences for virus replication in the presence of alpha/beta and gamma interferons. J. Virol. 2002, 76(5):2159-2167.
3. Angers S., Li T., Yi X., MacCoss M.J., Moon R.T., Zheng N. Molecular architecture and assembly of the DDB1-CUL4A ubiquitin ligase machinery. Nature 2006, 443(7111):590-593.
4. Bartenschlager R., Ahlborn-Laake L., Mous J., Jacobsen H. Nonstructural protein 3 of the hepatitis C virus encodes a serine-type proteinase required for cleavage at the NS3/4 and NS4/5 junctions. J. Virol 1993, 67(7):3835-3844.
5. Bartenschlager R., Penin F., Lohmann V., Andre P. Assembly of infectious hepatitis C virus particles. Trends Microbiol 2011, 19(2):95-103.
6. Bergamaschi A., Ayinde D., David A., Le Rouzic E., Morel M., Collin G., Descamps D., Damond F., Brun-Vezinet F., Nisole S., Margottin-Goguet F., Pancino G., Transy C. The human immunodeficiency virus type 2 Vpx protein usurps the CUL4A-DDB1 DCAF1 ubiquitin ligase to overcome a postentry block in macrophage infection. J. Virol 2009, 83(10):4854-4860.
7. Bortz E., Westera L., Maamary J., Steel J., Albrecht R.A., Manicassamy B., Chase G., Martinez-Sobrido L., Schwemmle M., Garcia-Sastre A. Host- and strain-specific regulation of influenza virus polymerase activity by interacting cellular proteins. MBio 2011, 2:4.
8. Brenndorfer E.D., Karthe J., Frelin L., Cebula P., Erhardt A., Schulte am Esch J., Hengel H., Bartenschlager R., Sallberg M., Haussinger D., Bode J.G. Nonstructural 3/4A protease of hepatitis C virus activates epithelial growth factor-induced signal transduction by cleavage of the T-cell protein tyrosine phosphatase. Hepatology 2009, 49(6):1810-1820.
9. Casey, L., Wen, X., De Noronha, C.M., 2010. The functions of the HIV1 protein Vpr and its action through the DCAF1.DDB1.Cullin4 ubiquitin ligase. Cytokine 51), 1-9.
10. Chatel-Chaix L., Melancon P., Racine M.E., Baril M., Lamarre D. Y-Box-Binding protein-1 interacts with hepatitis C virus NS3/4A and influences the equilibrium between viral RNA replication and infectious particle production. J. Virol. 2011, 85(21):11022-11037.
11. Chen X., Wu D., Zhao Y., Wong B.H., Guo L. Increasing phosphoproteome coverage and identification of phosphorylation motifs through combination of different HPLC fractionation methods. J. Chromatogr. B. Analyt. Technol. Biomed. Life Sci. 2011, 879(1):25-34.
12. Chen X., Zhang Y., Douglas L., Zhou P. UV-damaged DNA-binding proteins are targets of CUL-4A-mediated ubiquitination and degradation. J. Biol. Chem. 2001, 276(51):48175-48182.
13. Cheng G., Zhong J., Chisari F.V. Inhibition of dsRNA-induced signaling in hepatitis C virus-infected cells by NS3 protease-dependent and -independent mechanisms. Proc. Natl. Acad Sci. U. S. A. 2006, 103(22):8499-8504.
14. Didcock L., Young D.F., Goodbourn S., Randall R.E. The V protein of simian virus 5 inhibits interferon signalling by targeting STAT1 for proteasome-mediated degradation. J. Virol 1999, 73(12):9928-9933.
15. Fernandez, A.F., Esteller, M., 2010. Viral epigenomes in human tumorigenesis. Oncogene 29(10), 1405-1420.
16. Flower, K., Thomas, D., Heather, J., Ramasubramanyan, S., Jones, S., Sinclair, A.J., 2011. Epigenetic control of viral life-cycle by a DNA-methylation dependent transcription factor. PLoS One 6(10), e25922.
17. Gastaminza P., Kapadia S.B., Chisari F.V. Differential biophysical properties of infectious intracellular and secreted hepatitis C virus particles. J. Virol 2006, 80(22):11074-11081.
18. Grakoui A., McCourt D.W., Wychowski C., Feinstone S.M., Rice C.M. Characterization of the hepatitis C virus-encoded serine proteinase: determination of proteinase-dependent polyprotein cleavage sites. J. Virol. 1993, 67(5):2832-2843.
19. Higa L.A., Mihaylov I.S., Banks D.P., Zheng J., Zhang H. Radiation-mediated proteolysis of CDT1 by CUL4-ROC1 and CSN complexes constitutes a new checkpoint. Nat. Cell. Biol. 2003, 5(11):1008-1015.
20. Higa L.A., Wu M., Ye T., Kobayashi R., Sun H., Zhang H. CUL4-DDB1 ubiquitin ligase interacts with multiple WD40-repeat proteins and regulates histone methylation. Nat. Cell. Biol. 2006, 8(11):1277-1283.
21. Hsu M., Zhang J., Flint M., Logvinoff C., Cheng-Mayer C., Rice C.M., McKeating J.A. Hepatitis C virus glycoproteins mediate pH-dependent cell entry of pseudotyped retroviral particles. Proc. Natl. Acad. Sci. U. S. A. 2003, 100(12):7271-7276.
22. Hu J., McCall C.M., Ohta T., Xiong Y. Targeted ubiquitination of CDT1 by the DDB1-CUL4A-ROC1 ligase in response to DNA damage. Nat. Cell. Biol. 2004, 6(10):1003-1009.
23. Hwang B.J., Liao J.C., Chu G. Isolation of a cDNA encoding a UV-damaged DNA binding factor defective in xeroderma pigmentosum group E cells. Mutat. Res. 1996, 362(1):105-117.
24. Kapetanaki M.G., Guerrero-Santoro J., Bisi D.C., Hsieh C.L., Rapic-Otrin V., Levine A.S. The DDB1-CUL4ADDB2 ubiquitin ligase is deficient in xeroderma pigmentosum group E and targets histone H2A at UV-damaged DNA sites. Proc. Natl. Acad. Sci. U. S. A. 2006, 103(8):2588-2593.
25. Kawai T., Takahashi K., Sato S., Coban C., Kumar H., Kato H., Ishii K.J., Takeuchi O., Akira S. IPS-1, an adaptor triggering RIG-I- and Mda5-mediated type I interferon induction. Nat. Immunol 2005, 6(10):981-988.
26. Komoda Y., Hijikata M., Sato S., Asabe S., Kimura K., Shimotohno K. Substrate requirements of hepatitis C virus serine proteinase for intermolecular polypeptide cleavage in Escherichia coli. J. Virol. 1994, 68(11):7351-7357.
27. Lauer G.M., Walker B.D. Hepatitis C virus infection. N. Engl. J. Med. 2001, 345(1):41-52.
28. Lei Y., Moore C.B., Liesman R.M., O'Connor B.P., Bergstralh D.T., Chen Z.J., Pickles R.J., Ting J.P. MAVS-mediated apoptosis and its inhibition by viral proteins. PLoS ONE 2009, 4(5):e5466.
29. Leupin O., Bontron S., Schaeffer C., Strubin M. Hepatitis B virus X protein stimulates viral genome replication via a DDB1-dependent pathway distinct from that leading to cell death. J. Virol. 2005, 79(7):4238-4245.
30. Li K., Foy E., Ferreon J.C., Nakamura M., Ferreon A.C., Ikeda M., Ray S.C., Gale M., Lemon S.M. Immune evasion by hepatitis C virus NS3/4A protease-mediated cleavage of the Toll-like receptor 3 adaptor protein TRIF. Proc. Natl. Acad. Sci. U. S. A. 2005, 102(8):2992-2997.
31. Li T., Chen X., Garbutt K.C., Zhou P., Zheng N. Structure of DDB1 in complex with a paramyxovirus V protein: viral hijack of a propeller cluster in ubiquitin ligase. Cell 2006, 124(1):105-117.
32. Li T., Robert E.I., Van Breugel P.C., Strubin M., Zheng N. A promiscuous alpha-helical motif anchors viral hijackers and substrate receptors to the CUL4-DDB1 ubiquitin ligase machinery. Nat. Struct. Mol. Biol. 2010, 17(1):105-111.
33. Li X.D., Sun L., Seth R.B., Pineda G., Chen Z.J. Hepatitis C virus protease NS3/4A cleaves mitochondrial antiviral signaling protein off the mitochondria to evade innate immunity. Proc. Natl. Acad. Sci. U. S. A. 2005, 102(49):17717-17722.
34. Loo Y.M., Owen D.M., Li K., Erickson A.K., Johnson C.L., Fish P.M., Carney D.S., Wang T., Ishida H., Yoneyama M., Fujita T., Saito T., Lee W.M., Hagedorn C.H., Lau D.T., Weinman S.A., Lemon S.M., Gale M. Viral and therapeutic control of IFN-beta promoter stimulator 1 during hepatitis C virus infection. Proc. Natl. Acad. Sci. U. S. A. 2006, 103(15):6001-6006.
35. Meylan E., Curran J., Hofmann K., Moradpour D., Binder M., Bartenschlager R., Tschopp J. Cardif is an adaptor protein in the RIG-I antiviral pathway and is targeted by hepatitis C virus. Nature 2005, 437(7062):1167-1172.
36. Paschos, K., Allday, M.J., 2010. Epigenetic reprogramming of host genes in viral and microbial pathogenesis. Trends Microbiol 18(10), 439-447.
37. Pazhouhandeh M., Molinier J., Berr A., Genschik P. MSI4/FVE interacts with CUL4-DDB1 and a PRC2-like complex to control epigenetic regulation of flowering time in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 2011, 108(8):3430-3435.
38. Schrofelbauer B., Hakata Y., Landau N.R. HIV-1 Vpr function is mediated by interaction with the damage-specific DNA-binding protein DDB1. Proc. Natl. Acad. Sci. U. S. A. 2007, 104(10):4130-4135.
39. Seth R.B., Sun L., Ea C.K., Chen Z.J. Identification and characterization of MAVS, a mitochondrial antiviral signaling protein that activates NF-kappaB and IRF 3. Cell 2005, 122(5):669-682.
40. Sharova N., Wu Y., Zhu X., Stranska R., Kaushik R., Sharkey M., Stevenson M. Primate lentiviral Vpx commandeers DDB1 to counteract a macrophage restriction. PLoS Pathog. 2008, 4(5):e1000057.
41. Sugasawa K., Okuda Y., Saijo M., Nishi R., Matsuda N., Chu G., Mori T., Iwai S., Tanaka K., Hanaoka F. UV-induced ubiquitylation of XPC protein mediated by UV-DDB-ubiquitin ligase complex. Cell 2005, 121(3):387-400.
42. Tang J., Chu G. Xeroderma pigmentosum complementation group E and UV-damaged DNA-binding protein. DNA Repair (Amst) 2002, 1(8):601-616.
43. Trilling M., Le V.T., Fiedler M., Zimmermann A., Bleifuss E., Hengel H. Identification of DNA-damage DNA-binding protein 1 as a conditional essential factor for cytomegalovirus replication in interferon-gamma-stimulated cells. PLoS Pathog 2011, 7(6):e1002069.
44. Wang H., Zhai L., Xu J., Joo H.Y., Jackson S., Erdjument-Bromage H., Tempst P., Xiong Y., Zhang Y. Histone H3 and H4 ubiquitylation by the CUL4-DDB-ROC1 ubiquitin ligase facilitates cellular response to DNA damage. Mol. Cell. 2006, 22(3):383-394.
45. Wertz I.E., O'Rourke K.M., Zhang Z., Dornan D., Arnott D., Deshaies R.J., Dixit V.M. Human De-etiolated-1 regulates c-Jun by assembling a CUL4A ubiquitin ligase. Science 2004, 303(5662):1371-1374.
46. Xu L.G., Wang Y.Y., Han K.J., Li L.Y., Zhai Z., Shu H.B. VISA is an adapter protein required for virus-triggered IFN-beta signaling. Mol. Cell. 2005, 19(6):727-740.
47. Yamaji S., Zhang M., Zhang J., Endo Y., Bibikova E., Goff S.P., Cang Y. Hepatocyte-specific deletion of DDB1 induces liver regeneration and tumorigenesis. Proc. Natl. Acad. Sci. U. S. A. 2010, 107(51):22237-22242.
48. Zhong J., Gastaminza P., Cheng G., Kapadia S., Kato T., Burton D.R., Wieland S.F., Uprichard S.L., Wakita T., Chisari F.V. Robust hepatitis C virus infection in vitro. Proc. Natl. Acad. Sci. U. S. A. 2005, 102(26):9294-9299.