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Volumn 4, Issue 12, 2012, Pages

Genomic vulnerability to LINE-1 hypomethylation is a potential determinant of the clinicogenetic features of multiple myeloma

Author keywords

Common breakpoints; Global hypomethylation; LINE 1; Multiple myeloma; Repetitive elements

Indexed keywords

METHYL CPG BINDING PROTEIN;

EID: 84871369855     PISSN: None     EISSN: 1756994X     Source Type: Journal    
DOI: 10.1186/gm402     Document Type: Article
Times cited : (30)

References (52)
  • 4
    • 0037085787 scopus 로고    scopus 로고
    • Oncogenesis of multiple myeloma: 14q32 and 13q chromosomal abnormalities are not randomly distributed, but correlate with natural history, immunological features, and clinical presentation.
    • 10.1182/blood.V99.6.2185, 11877296
    • Avet-Loiseau H, Facon T, Grosbois B, Magrangeas F, Rapp MJ, Harousseau JL, Minvielle S, Bataille R. Oncogenesis of multiple myeloma: 14q32 and 13q chromosomal abnormalities are not randomly distributed, but correlate with natural history, immunological features, and clinical presentation. Blood 2002, 99:2185-2191. 10.1182/blood.V99.6.2185, 11877296.
    • (2002) Blood , vol.99 , pp. 2185-2191
    • Avet-Loiseau, H.1    Facon, T.2    Grosbois, B.3    Magrangeas, F.4    Rapp, M.J.5    Harousseau, J.L.6    Minvielle, S.7    Bataille, R.8
  • 6
    • 33749559905 scopus 로고    scopus 로고
    • Recent advances in the treatment of multiple myeloma.
    • 10.2174/138920106778521569, 17076653
    • Yasui H, Hideshima T, Richardson PG, Anderson KC. Recent advances in the treatment of multiple myeloma. Curr Pharm Biotechnol 2006, 7:381-393. 10.2174/138920106778521569, 17076653.
    • (2006) Curr Pharm Biotechnol , vol.7 , pp. 381-393
    • Yasui, H.1    Hideshima, T.2    Richardson, P.G.3    Anderson, K.C.4
  • 7
    • 3242777803 scopus 로고    scopus 로고
    • Advances in biology of multiple myeloma: clinical applications:.
    • 10.1182/blood-2004-01-0037, 15090448
    • Hideshima T, Bergsagel PL, Kuehl WM, Anderson KC. Advances in biology of multiple myeloma: clinical applications:. Blood 2004, 104:607-618. 10.1182/blood-2004-01-0037, 15090448.
    • (2004) Blood , vol.104 , pp. 607-618
    • Hideshima, T.1    Bergsagel, P.L.2    Kuehl, W.M.3    Anderson, K.C.4
  • 8
    • 0030940091 scopus 로고    scopus 로고
    • Frequent hypermethylation of p16 and p15 genes in multiple myeloma.
    • Ng MH, Chung YF, Lo KW, Wickham NW, Lee JC, Huang DP. Frequent hypermethylation of p16 and p15 genes in multiple myeloma. Blood 1997, 89:2500-2506.
    • (1997) Blood , vol.89 , pp. 2500-2506
    • Ng, M.H.1    Chung, Y.F.2    Lo, K.W.3    Wickham, N.W.4    Lee, J.C.5    Huang, D.P.6
  • 9
    • 0035412365 scopus 로고    scopus 로고
    • P16(INK4a) and p15(INK4b) gene methylations in plasma cells from monoclonal gammopathy of undetermined significance.
    • 10.1182/blood.V98.1.244, 11418489
    • Guillerm G, Gyan E, Wolowiec D, Facon T, Avet-Loiseau H, Kuliczkowski K, Bauters F, Fenaux P, Quesnel B. p16(INK4a) and p15(INK4b) gene methylations in plasma cells from monoclonal gammopathy of undetermined significance. Blood 2001, 98:244-246. 10.1182/blood.V98.1.244, 11418489.
    • (2001) Blood , vol.98 , pp. 244-246
    • Guillerm, G.1    Gyan, E.2    Wolowiec, D.3    Facon, T.4    Avet-Loiseau, H.5    Kuliczkowski, K.6    Bauters, F.7    Fenaux, P.8    Quesnel, B.9
  • 12
    • 39149102515 scopus 로고    scopus 로고
    • Genome-wide transcriptional response to 5-aza-2'-deoxycytidine and trichostatin a in multiple myeloma cells.
    • 10.1158/0008-5472.CAN-07-2531, 18172295
    • Heller G, Schmidt WM, Ziegler B, Holzer S, Mullauer L, Bilban M, Zielinski CC, Drach J, Zochbauer Muller S. Genome-wide transcriptional response to 5-aza-2'-deoxycytidine and trichostatin a in multiple myeloma cells. Cancer Res 2008, 68:44-54. 10.1158/0008-5472.CAN-07-2531, 18172295.
    • (2008) Cancer Res , vol.68 , pp. 44-54
    • Heller, G.1    Schmidt, W.M.2    Ziegler, B.3    Holzer, S.4    Mullauer, L.5    Bilban, M.6    Zielinski, C.C.7    Drach, J.8    Zochbauer Muller, S.9
  • 15
    • 77956288766 scopus 로고    scopus 로고
    • DNA methylation analysis determines the high frequency of genic hypomethylation and low frequency of hypermethylation events in plasma cell tumors.
    • 10.1158/0008-5472.CAN-10-0282, 20736376
    • Salhia B, Baker A, Ahmann G, Auclair D, Fonseca R, Carpten J. DNA methylation analysis determines the high frequency of genic hypomethylation and low frequency of hypermethylation events in plasma cell tumors. Cancer Res 2010, 70:6934-6944. 10.1158/0008-5472.CAN-10-0282, 20736376.
    • (2010) Cancer Res , vol.70 , pp. 6934-6944
    • Salhia, B.1    Baker, A.2    Ahmann, G.3    Auclair, D.4    Fonseca, R.5    Carpten, J.6
  • 16
    • 78751508049 scopus 로고    scopus 로고
    • Aberrant global methylation patterns affect the molecular pathogenesis and prognosis of multiple myeloma.
    • 10.1182/blood-2010-04-279539, 20944071
    • Walker BA, Wardell CP, Chiecchio L, Smith EM, Boyd KD, Neri A, Davies FE, Ross FM, Morgan GJ. Aberrant global methylation patterns affect the molecular pathogenesis and prognosis of multiple myeloma. Blood 2011, 117:553-562. 10.1182/blood-2010-04-279539, 20944071.
    • (2011) Blood , vol.117 , pp. 553-562
    • Walker, B.A.1    Wardell, C.P.2    Chiecchio, L.3    Smith, E.M.4    Boyd, K.D.5    Neri, A.6    Davies, F.E.7    Ross, F.M.8    Morgan, G.J.9
  • 19
    • 0020699979 scopus 로고
    • Hypomethylation distinguishes genes of some human cancers from their normal counterparts.
    • 10.1038/301089a0, 6185846
    • Feinberg AP, Vogelstein B. Hypomethylation distinguishes genes of some human cancers from their normal counterparts. Nature 1983, 301:89-92. 10.1038/301089a0, 6185846.
    • (1983) Nature , vol.301 , pp. 89-92
    • Feinberg, A.P.1    Vogelstein, B.2
  • 21
    • 70349318211 scopus 로고    scopus 로고
    • The impact of retrotransposons on human genome evolution.
    • 10.1038/nrg2640, 2884099, 19763152
    • Cordaux R, Batzer MA. The impact of retrotransposons on human genome evolution. Nat Rev Genet 2009, 10:691-703. 10.1038/nrg2640, 2884099, 19763152.
    • (2009) Nat Rev Genet , vol.10 , pp. 691-703
    • Cordaux, R.1    Batzer, M.A.2
  • 28
    • 84874255144 scopus 로고    scopus 로고
    • An ultrafast, memory-efficient short read aligner.
    • Johns Hopkins University. Bowtie
    • Johns Hopkins University. Bowtie An ultrafast, memory-efficient short read aligner. Johns Hopkins University. Bowtie., http://bowtie-bio.sourceforge.net/index.shtml
  • 29
    • 84871628911 scopus 로고    scopus 로고
    • UCSC Genome Bioinformatics.
    • University of California Santa Cruz
    • University of California Santa Cruz UCSC Genome Bioinformatics. University of California Santa Cruz., http://genome.ucsc.edu/
  • 31
    • 45449086640 scopus 로고    scopus 로고
    • LINE-1 ORF1 protein enhances Alu SINE Retrotransposition.
    • 10.1016/j.gene.2008.04.007, 2491492, 18534786
    • Wallace N, Wagstaff BJ, Deininger PL, Roy-Engel AM. LINE-1 ORF1 protein enhances Alu SINE Retrotransposition. Gene 2008, 419:1-6. 10.1016/j.gene.2008.04.007, 2491492, 18534786.
    • (2008) Gene , vol.419 , pp. 1-6
    • Wallace, N.1    Wagstaff, B.J.2    Deininger, P.L.3    Roy-Engel, A.M.4
  • 33
    • 0036250811 scopus 로고    scopus 로고
    • Alu repeats and human genomic diversity.
    • 10.1038/nrg798, 11988762
    • Batzer MA, Deininger PL. Alu repeats and human genomic diversity. Nat Rev Genet 2002, 3:370-379. 10.1038/nrg798, 11988762.
    • (2002) Nat Rev Genet , vol.3 , pp. 370-379
    • Batzer, M.A.1    Deininger, P.L.2
  • 38
    • 78049349212 scopus 로고    scopus 로고
    • Demethylation of a LINE-1 antisense promoter in the cMet locus impairs Met signalling through induction of illegitimate transcription.
    • 10.1038/onc.2010.227, 20562909
    • Weber B, Kimhi S, Howard G, Eden A, Lyko F. Demethylation of a LINE-1 antisense promoter in the cMet locus impairs Met signalling through induction of illegitimate transcription. Oncogene 2010, 29:5775-5784. 10.1038/onc.2010.227, 20562909.
    • (2010) Oncogene , vol.29 , pp. 5775-5784
    • Weber, B.1    Kimhi, S.2    Howard, G.3    Eden, A.4    Lyko, F.5
  • 39
    • 77952414230 scopus 로고    scopus 로고
    • Hypomethylation of a LINE-1 promoter activates an alternate transcript of the MET oncogene in bladders with cancer.
    • 10.1371/journal.pgen.1000917, 2858672, 20421991
    • Wolff EM, Byun HM, Han HF, Sharma S, Nichols PW, Siegmund KD, Yang AS, Jones PA, Liang G. Hypomethylation of a LINE-1 promoter activates an alternate transcript of the MET oncogene in bladders with cancer. PLoS Genet 2010, 6:e1000917. 10.1371/journal.pgen.1000917, 2858672, 20421991.
    • (2010) PLoS Genet , vol.6
    • Wolff, E.M.1    Byun, H.M.2    Han, H.F.3    Sharma, S.4    Nichols, P.W.5    Siegmund, K.D.6    Yang, A.S.7    Jones, P.A.8    Liang, G.9
  • 43
    • 2442667886 scopus 로고    scopus 로고
    • Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes.
    • 10.1038/nature02536, 15152245
    • Han JS, Szak ST, Boeke JD. Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes. Nature 2004, 429:268-274. 10.1038/nature02536, 15152245.
    • (2004) Nature , vol.429 , pp. 268-274
    • Han, J.S.1    Szak, S.T.2    Boeke, J.D.3
  • 45
    • 0021278143 scopus 로고
    • DNA polymerase alpha inhibition by aphidicolin induces gaps and breaks at common fragile sites in human chromosomes.
    • 10.1007/BF00272988, 6430783
    • Glover TW, Berger C, Coyle J, Echo B. DNA polymerase alpha inhibition by aphidicolin induces gaps and breaks at common fragile sites in human chromosomes. Hum Genet 1984, 67:136-142. 10.1007/BF00272988, 6430783.
    • (1984) Hum Genet , vol.67 , pp. 136-142
    • Glover, T.W.1    Berger, C.2    Coyle, J.3    Echo, B.4
  • 47
    • 70449388892 scopus 로고    scopus 로고
    • Common fragile sites are characterized by histone hypoacetylation.
    • 10.1093/hmg/ddp410, 2773265, 19717471
    • Jiang Y, Lucas I, Young DJ, Davis EM, Karrison T, Rest JS, Le Beau MM. Common fragile sites are characterized by histone hypoacetylation. Hum Mol Genet 2009, 18:4501-4512. 10.1093/hmg/ddp410, 2773265, 19717471.
    • (2009) Hum Mol Genet , vol.18 , pp. 4501-4512
    • Jiang, Y.1    Lucas, I.2    Young, D.J.3    Davis, E.M.4    Karrison, T.5    Rest, J.S.6    Le Beau, M.M.7
  • 48
    • 0037126393 scopus 로고    scopus 로고
    • Cloning and characterization of the common fragile site FRA6F harboring a replicative senescence gene and frequently deleted in human tumors.
    • 10.1038/sj.onc.1205573, 12370818
    • Morelli C, Karayianni E, Magnanini C, Mungall AJ, Thorland E, Negrini M, Smith DI, Barbanti Brodano G. Cloning and characterization of the common fragile site FRA6F harboring a replicative senescence gene and frequently deleted in human tumors. Oncogene 2002, 21:7266-7276. 10.1038/sj.onc.1205573, 12370818.
    • (2002) Oncogene , vol.21 , pp. 7266-7276
    • Morelli, C.1    Karayianni, E.2    Magnanini, C.3    Mungall, A.J.4    Thorland, E.5    Negrini, M.6    Smith, D.I.7    Barbanti Brodano, G.8
  • 50
    • 33748638843 scopus 로고    scopus 로고
    • Identification of recurrent chromosomal breakpoints in multiple myeloma with complex karyotypes by combined G-banding, spectral karyotyping, and fluorescence in situ hybridization analyses.
    • 10.1016/j.cancergencyto.2006.04.008, 16938572
    • Saez B, Martin Subero JI, Largo C, Martin MC, Odero MD, Prosper F, Siebert R, Calasanz MJ, Cigudosa JC. Identification of recurrent chromosomal breakpoints in multiple myeloma with complex karyotypes by combined G-banding, spectral karyotyping, and fluorescence in situ hybridization analyses. Cancer Genet Cytogenet 2006, 169:143-149. 10.1016/j.cancergencyto.2006.04.008, 16938572.
    • (2006) Cancer Genet Cytogenet , vol.169 , pp. 143-149
    • Saez, B.1    Martin Subero, J.I.2    Largo, C.3    Martin, M.C.4    Odero, M.D.5    Prosper, F.6    Siebert, R.7    Calasanz, M.J.8    Cigudosa, J.C.9


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