메뉴 건너뛰기




Volumn 29, Issue 12, 2012, Pages 531-535

Species identification of Wickerhamomyces anomalus and related taxa using β-tubulin (β-tub) DNA barcode marker

Author keywords

tubulin gene; DNA barcoding; Species specific PCR; Wickerhamomyces anomalus

Indexed keywords

BETA TUBULIN; INTERNAL TRANSCRIBED SPACER;

EID: 84871019893     PISSN: 0749503X     EISSN: 10970061     Source Type: Journal    
DOI: 10.1002/yea.2933     Document Type: Article
Times cited : (7)

References (42)
  • 1
    • 0344613211 scopus 로고    scopus 로고
    • Ribosomal ITS sequences and plant phylogenetic inference
    • Alvarez I, Wendel JF. 2003. Ribosomal ITS sequences and plant phylogenetic inference. Mol Phylogenet Evol 29: 417-434.
    • (2003) Mol Phylogenet Evol , vol.29 , pp. 417-434
    • Alvarez, I.1    Wendel, J.F.2
  • 2
    • 0034827195 scopus 로고    scopus 로고
    • AFLP analysis of type strains and laboratory and industrial strains of Saccharomyces sensu stricto and its application to phenetic clustering
    • Azumi M, Goto-Yamamoto N. 2001. AFLP analysis of type strains and laboratory and industrial strains of Saccharomyces sensu stricto and its application to phenetic clustering. Yeast 18: 1145-1154.
    • (2001) Yeast , vol.18 , pp. 1145-1154
    • Azumi, M.1    Goto-Yamamoto, N.2
  • 3
    • 9344225108 scopus 로고    scopus 로고
    • Evolutionary relationships among β-tubulin gene sequences of basidiomycetous fungi
    • Begerow D, John B, Oberwinkler F. 2004. Evolutionary relationships among β-tubulin gene sequences of basidiomycetous fungi. Mycol Res 108: 1257-1263.
    • (2004) Mycol Res , vol.108 , pp. 1257-1263
    • Begerow, D.1    John, B.2    Oberwinkler, F.3
  • 4
    • 0036190640 scopus 로고    scopus 로고
    • An analysis of inter- and intraspecific genetic variabilities in the Kluyveromyces marxianus group of yeast species for the reconsideration of the K. lactis taxon
    • Belloch C, Femandez-Espinar T, Querol A, et al. 2002. An analysis of inter- and intraspecific genetic variabilities in the Kluyveromyces marxianus group of yeast species for the reconsideration of the K. lactis taxon. Yeast 19: 257-266.
    • (2002) Yeast , vol.19 , pp. 257-266
    • Belloch, C.1    Femandez-Espinar, T.2    Querol, A.3
  • 5
    • 0027400381 scopus 로고
    • Isolation and characterisation of a β-tubulin-encoding gene from Colletotrichum gloeosporioides f. sp. aeschynomene
    • Buhr TL, Dickman MB. 1990. Isolation and characterisation of a β-tubulin-encoding gene from Colletotrichum gloeosporioides f. sp. aeschynomene. Gene 124: 121-125.
    • (1990) Gene , vol.124 , pp. 121-125
    • Buhr, T.L.1    Dickman, M.B.2
  • 6
    • 0028116036 scopus 로고
    • Isolation, characterization, and expression of a second β-tubulin-encoding gene from Colletotrichum gloeosporioides f. sp. aeschynomene
    • Buhr TL, Dickman MB. 1994. Isolation, characterization, and expression of a second β-tubulin-encoding gene from Colletotrichum gloeosporioides f. sp. aeschynomene. Appl Environ Microbiol 60: 4155-4159.
    • (1994) Appl Environ Microbiol , vol.60 , pp. 4155-4159
    • Buhr, T.L.1    Dickman, M.B.2
  • 7
    • 79451469037 scopus 로고    scopus 로고
    • Wickerhamomyces anomalus in the sourdough microbial ecosystem
    • Daniel HM, Moons MC, Huret S, et al. 2011. Wickerhamomyces anomalus in the sourdough microbial ecosystem. Antonie Van Leeuwenhoek 99: 63-73.
    • (2011) Antonie Van Leeuwenhoek , vol.99 , pp. 63-73
    • Daniel, H.M.1    Moons, M.C.2    Huret, S.3
  • 8
    • 0141676440 scopus 로고    scopus 로고
    • Oligonucleotide primers for the universal amplification of β-tubulin genes facilitate phylogenetic analyses in the regnum fungi
    • Einax E, Voigt K. 2003. Oligonucleotide primers for the universal amplification of β-tubulin genes facilitate phylogenetic analyses in the regnum fungi. Org Divers Evol 3: 185-194.
    • (2003) Org Divers Evol , vol.3 , pp. 185-194
    • Einax, E.1    Voigt, K.2
  • 9
    • 0034115579 scopus 로고    scopus 로고
    • Biodiversity and systematics of basidiomycetous yeasts as determined by large-subunit rDNA D1/D2 domain sequence analysis
    • Fell JW, Boekhout T, Fonseca A, et al. 2000. Biodiversity and systematics of basidiomycetous yeasts as determined by large-subunit rDNA D1/D2 domain sequence analysis. Int J Syst Evol Microbiol 50: 1351-1371.
    • (2000) Int J Syst Evol Microbiol , vol.50 , pp. 1351-1371
    • Fell, J.W.1    Boekhout, T.2    Fonseca, A.3
  • 10
    • 0027234352 scopus 로고
    • A nucleotide substitution in one of the β-tubulin genes of Trichoderma viride confers resistance to the antimitotic drug methyl benzimidazole-2-yl-carbamate
    • Goldman GH, Temmerman W, Jacobs D, et al. 1993. A nucleotide substitution in one of the β-tubulin genes of Trichoderma viride confers resistance to the antimitotic drug methyl benzimidazole-2-yl-carbamate. Mol Gen Genet 240: 73-80.
    • (1993) Mol Gen Genet , vol.240 , pp. 73-80
    • Goldman, G.H.1    Temmerman, W.2    Jacobs, D.3
  • 11
    • 0028881887 scopus 로고
    • New and emerging yeast pathogens
    • Hazen KC. 1995. New and emerging yeast pathogens. Clin Microbiol Rev 8: 462-478.
    • (1995) Clin Microbiol Rev , vol.8 , pp. 462-478
    • Hazen, K.C.1
  • 12
    • 0035126286 scopus 로고    scopus 로고
    • Microsatellite typing as a new tool for identification of Saccharomyces cerevisiae strains
    • Hennequin C, Thierry A, Richard GF, et al. 2001. Microsatellite typing as a new tool for identification of Saccharomyces cerevisiae strains. J Clin Microbiol 39: 551-559.
    • (2001) J Clin Microbiol , vol.39 , pp. 551-559
    • Hennequin, C.1    Thierry, A.2    Richard, G.F.3
  • 13
    • 79952447866 scopus 로고    scopus 로고
    • Progress in molecular and morphological taxon discovery in fungi and options for formal classification of environmental sequences
    • Hibbett DS, Ohman A, Glotzer D, et al. 2011. Progress in molecular and morphological taxon discovery in fungi and options for formal classification of environmental sequences. Fung Biol Rev 25: 38-47.
    • (2011) Fung Biol Rev , vol.25 , pp. 38-47
    • Hibbett, D.S.1    Ohman, A.2    Glotzer, D.3
  • 14
    • 55149085928 scopus 로고    scopus 로고
    • A novel specific DNA marker in Saccharomyces bayanus for species identification of the Saccharomyces sensu stricto complex
    • Huang CH, Lee FL, Tai CJ. 2008. A novel specific DNA marker in Saccharomyces bayanus for species identification of the Saccharomyces sensu stricto complex. J Microbiol Meth 75: 531-534.
    • (2008) J Microbiol Meth , vol.75 , pp. 531-534
    • Huang, C.H.1    Lee, F.L.2    Tai, C.J.3
  • 15
    • 58949097508 scopus 로고    scopus 로고
    • The β-tubulin gene as a molecular phylogenetic marker for classification and discrimination of Saccharomyces sensu stricto complex
    • Huang CH, Lee FL, Tai CJ. 2009. The β-tubulin gene as a molecular phylogenetic marker for classification and discrimination of Saccharomyces sensu stricto complex. Antonie Van Leeuwenhoek 95: 135-142.
    • (2009) Antonie Van Leeuwenhoek , vol.95 , pp. 135-142
    • Huang, C.H.1    Lee, F.L.2    Tai, C.J.3
  • 16
    • 67649817469 scopus 로고    scopus 로고
    • Delimitation of the species of the Debaryomyces hansenii complex by intron sequence analysis
    • Jacques N, Mallet S, Casaregola S. 2009. Delimitation of the species of the Debaryomyces hansenii complex by intron sequence analysis. Int J Syst Evol Microbiol 59: 1242-1251.
    • (2009) Int J Syst Evol Microbiol , vol.59 , pp. 1242-1251
    • Jacques, N.1    Mallet, S.2    Casaregola, S.3
  • 17
    • 77950381999 scopus 로고    scopus 로고
    • Nosocomial transmission of Candida pelliculosa fungemia in a pediatric intensive care unit and review of the literature
    • Kalkanci A, Dizbay M, Turan O, et al. 2010. Nosocomial transmission of Candida pelliculosa fungemia in a pediatric intensive care unit and review of the literature. Turk J Pediatr 52: 42-49.
    • (2010) Turk J Pediatr , vol.52 , pp. 42-49
    • Kalkanci, A.1    Dizbay, M.2    Turan, O.3
  • 18
    • 80054093727 scopus 로고    scopus 로고
    • A new methanol assimilating yeast, Ogataea parapolymorpha, the ascosporic state of Candida parapolymorpha
    • Kurtzman CP. 2011. A new methanol assimilating yeast, Ogataea parapolymorpha, the ascosporic state of Candida parapolymorpha. Antonie Van Leeuwenhoek 100: 455-462.
    • (2011) Antonie Van Leeuwenhoek , vol.100 , pp. 455-462
    • Kurtzman, C.P.1
  • 19
    • 84862679998 scopus 로고    scopus 로고
    • Komagataella populi sp. nov. and Komagataella ulmi sp. nov., two new methanol assimilating yeasts from exudates of deciduous trees
    • Kurtzman CP. 2012. Komagataella populi sp. nov. and Komagataella ulmi sp. nov., two new methanol assimilating yeasts from exudates of deciduous trees. Antonie Van Leeuwenhoek 101: 859-868.
    • (2012) Antonie Van Leeuwenhoek , vol.101 , pp. 859-868
    • Kurtzman, C.P.1
  • 20
    • 0030907763 scopus 로고    scopus 로고
    • Identification of clinically important ascomycetous yeasts based on nucleotide divergence in the 5′ end of the large subunit (26S) ribosomal DNA gene
    • Kurtzman CP, Robnett CJ. 1997. Identification of clinically important ascomycetous yeasts based on nucleotide divergence in the 5′ end of the large subunit (26S) ribosomal DNA gene. J Clin Microbiol 35: 1216-1223.
    • (1997) J Clin Microbiol , vol.35 , pp. 1216-1223
    • Kurtzman, C.P.1    Robnett, C.J.2
  • 21
    • 0031792246 scopus 로고    scopus 로고
    • Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences
    • Kurtzman CP, Robnett CJ. 1998. Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences. Antonie Van Leeuwenhoek 73: 331-371.
    • (1998) Antonie Van Leeuwenhoek , vol.73 , pp. 331-371
    • Kurtzman, C.P.1    Robnett, C.J.2
  • 22
    • 0037540048 scopus 로고    scopus 로고
    • Phylogenetic relationships among yeasts of the Saccharomyces complex determined from multigene sequence analyses
    • Kurtzman CP, Robnett CJ. 2003. Phylogenetic relationships among yeasts of the Saccharomyces complex determined from multigene sequence analyses. FEMS Yeast Res 3: 417-432.
    • (2003) FEMS Yeast Res , vol.3 , pp. 417-432
    • Kurtzman, C.P.1    Robnett, C.J.2
  • 23
    • 49749124650 scopus 로고    scopus 로고
    • Phylogenetic relationships among species of Pichia, Issatchenkia and Williopsis determined from multigene sequence analysis, and the proposal of Barnettozyma gen. nov., Lindnera gen. nov. and Wickerhamomyces gen. nov
    • Kurtzman CP, Robnett CJ, Bacehoar-Powers E. 2008. Phylogenetic relationships among species of Pichia, Issatchenkia and Williopsis determined from multigene sequence analysis, and the proposal of Barnettozyma gen. nov., Lindnera gen. nov. and Wickerhamomyces gen. nov. FEMS Yeast Res 8: 939-954.
    • (2008) FEMS Yeast Res , vol.8 , pp. 939-954
    • Kurtzman, C.P.1    Robnett, C.J.2    Bacehoar-Powers, E.3
  • 24
    • 1842638563 scopus 로고    scopus 로고
    • PCR-DGGE differentiation of strains of Saccharomyces sensu stricto
    • Manzano M, Cocolin L, Longo B, et al. 2004. PCR-DGGE differentiation of strains of Saccharomyces sensu stricto. Antonie Van Leeuwenhoek 85: 23-27.
    • (2004) Antonie Van Leeuwenhoek , vol.85 , pp. 23-27
    • Manzano, M.1    Cocolin, L.2    Longo, B.3
  • 25
    • 0023064410 scopus 로고
    • Aspergillus nidulans β-tubulin genes are unusually divergent
    • May GS, Tsang MLS, Smith H, et al. 1987. Aspergillus nidulans β-tubulin genes are unusually divergent. Gene 55: 231-243.
    • (1987) Gene , vol.55 , pp. 231-243
    • May, G.S.1    Tsang, M.L.S.2    Smith, H.3
  • 26
    • 79952067123 scopus 로고    scopus 로고
    • Beneficial effects of probiotic and food borne yeasts on human health
    • Moslehi-Jenabian S, Pedersen LL, Jespersen L. 2010. Beneficial effects of probiotic and food borne yeasts on human health. Nutrients 2: 449-473.
    • (2010) Nutrients , vol.2 , pp. 449-473
    • Moslehi-Jenabian, S.1    Pedersen, L.L.2    Jespersen, L.3
  • 27
    • 19544387019 scopus 로고    scopus 로고
    • Pichia myanmarensis sp. nov., a novel cation-tolerant yeast isolated from palm sugar in Myanmar
    • Nagatsuka Y, Kawasaki H, Seki T. 2005. Pichia myanmarensis sp. nov., a novel cation-tolerant yeast isolated from palm sugar in Myanmar. Int J Syst Evol Microbiol 55: 1379-1382.
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 1379-1382
    • Nagatsuka, Y.1    Kawasaki, H.2    Seki, T.3
  • 28
    • 0031778848 scopus 로고    scopus 로고
    • Molecular systematics and phylogeography of the Gibberella fujikori complex
    • O'Donnell K, Cigelnik E, Nirenberg H. 1998. Molecular systematics and phylogeography of the Gibberella fujikori complex. Mycologia 90: 465-493.
    • (1998) Mycologia , vol.90 , pp. 465-493
    • O'Donnell, K.1    Cigelnik, E.2    Nirenberg, H.3
  • 29
    • 0025303723 scopus 로고
    • Characterisation of two divergent β-tubulin genes from Colletotrichum graminicola
    • Panaccione DG, Hanau RM. 1990. Characterisation of two divergent β-tubulin genes from Colletotrichum graminicola. Gene 86: 163-170.
    • (1990) Gene , vol.86 , pp. 163-170
    • Panaccione, D.G.1    Hanau, R.M.2
  • 30
    • 79451471304 scopus 로고    scopus 로고
    • Past, present and future research direction with Pichia anomala
    • Passoth V, Olstorpe M, Schnurer J. 2011. Past, present and future research direction with Pichia anomala. Antonie Van Leeuwenhoek 99: 121-125.
    • (2011) Antonie Van Leeuwenhoek , vol.99 , pp. 121-125
    • Passoth, V.1    Olstorpe, M.2    Schnurer, J.3
  • 31
    • 48249119613 scopus 로고    scopus 로고
    • Phylogenetic analysis of Aspergillus species using DNA sequences
    • Peterson SW. 2008. Phylogenetic analysis of Aspergillus species using DNA sequences. Mycologia 100: 205-226.
    • (2008) Mycologia , vol.100 , pp. 205-226
    • Peterson, S.W.1
  • 32
    • 10644271884 scopus 로고    scopus 로고
    • Phylogenetic analysis of Penicillium subgenus Penicillium using partial β-tubulin sequences
    • Samson RA, Seifert KA, Kuijpers AFA, et al. 2004. Phylogenetic analysis of Penicillium subgenus Penicillium using partial β-tubulin sequences. Stud Mycol 49: 175-200.
    • (2004) Stud Mycol , vol.49 , pp. 175-200
    • Samson, R.A.1    Seifert, K.A.2    Kuijpers, A.F.A.3
  • 33
    • 0034769987 scopus 로고    scopus 로고
    • Phylogeny of Calonectria based on comparison of β-tubulin DNA sequences
    • Schoch CL, Crous PW, Wingfield BD, et al. 2001. Phylogeny of Calonectria based on comparison of β-tubulin DNA sequences. Mycol Res 105: 1045-1052.
    • (2001) Mycol Res , vol.105 , pp. 1045-1052
    • Schoch, C.L.1    Crous, P.W.2    Wingfield, B.D.3
  • 34
    • 84859972408 scopus 로고    scopus 로고
    • Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for fungi
    • Schoch CL, Seifert KA, Huhndorf S, et al. 2012. Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for fungi. Proc Natl Acad Sci USA 109: 6241-6246.
    • (2012) Proc Natl Acad Sci USA , vol.109 , pp. 6241-6246
    • Schoch, C.L.1    Seifert, K.A.2    Huhndorf, S.3
  • 35
    • 65349088516 scopus 로고    scopus 로고
    • Progress towards DNA barcoding of fungi
    • Seifert KA. 2009. Progress towards DNA barcoding of fungi. Mol Ecol Res 9: 83-89.
    • (2009) Mol Ecol Res , vol.9 , pp. 83-89
    • Seifert, K.A.1
  • 36
    • 34247577123 scopus 로고    scopus 로고
    • Phylogenetics of Saccharomycetales, the ascomycete yeasts
    • Suh SO, Blackwell M, Kurtzman CP, et al. 2006. Phylogenetics of Saccharomycetales, the ascomycete yeasts. Mycologia 98: 1006-1017.
    • (2006) Mycologia , vol.98 , pp. 1006-1017
    • Suh, S.O.1    Blackwell, M.2    Kurtzman, C.P.3
  • 37
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, et al. 1997. The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3
  • 38
    • 0029861234 scopus 로고    scopus 로고
    • An opportunity to distinguish species of Saccharomyces sensu stricto by electrophoretic separation of the large chromosomes
    • Tornai-Lehoczki J, Dlauchy D. 1996. An opportunity to distinguish species of Saccharomyces sensu stricto by electrophoretic separation of the large chromosomes. Lett Appl Microbiol 23: 227-230.
    • (1996) Lett Appl Microbiol , vol.23 , pp. 227-230
    • Tornai-Lehoczki, J.1    Dlauchy, D.2
  • 39
    • 43549090929 scopus 로고    scopus 로고
    • Re-examining the phylogeny of clinically relevant Candida species and allied genera based on multigene analyses
    • Tsui CK, Daniel HM, Robert V, et al. 2008. Re-examining the phylogeny of clinically relevant Candida species and allied genera based on multigene analyses. FEMS Yeast Res 8: 651-659.
    • (2008) FEMS Yeast Res , vol.8 , pp. 651-659
    • Tsui, C.K.1    Daniel, H.M.2    Robert, V.3
  • 40
    • 84862266660 scopus 로고    scopus 로고
    • Multilocus phylogenetic study of the Scheffersomyces yeast clade and characterization of the N-terminal region of xylose reductase gene
    • Urbina H, Blackwell M. 2012. Multilocus phylogenetic study of the Scheffersomyces yeast clade and characterization of the N-terminal region of xylose reductase gene. PLoS One 7: 39128.
    • (2012) PLoS One , vol.7 , pp. 39128
    • Urbina, H.1    Blackwell, M.2
  • 41
    • 43049129605 scopus 로고    scopus 로고
    • Rapid differentiation of phenotypically similar yeast species by single-strand conformation polymorphism analysis of ribosomal DNA
    • Wang QM, Li J, Wang SA, et al. 2008. Rapid differentiation of phenotypically similar yeast species by single-strand conformation polymorphism analysis of ribosomal DNA. Appl Environ Microbiol 74: 2604-2611.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 2604-2611
    • Wang, Q.M.1    Li, J.2    Wang, S.A.3
  • 42
    • 0000432452 scopus 로고
    • Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
    • In, Innis M, eds). Academic Press: Orlando, FL.
    • White TJ, Bruns T, Lee S, et al. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In PCR Protocols: A Guide to Methods and Applications, Innis M, et al. (eds). Academic Press: Orlando, FL; 315-322.
    • (1990) PCR Protocols: A Guide to Methods and Applications , pp. 315-322
    • White, T.J.1    Bruns, T.2    Lee, S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.