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Volumn 7, Issue 11, 2011, Pages

Effect of host species on the distribution of mutational fitness effects for an RNA virus

Author keywords

[No Author keywords available]

Indexed keywords

ANGIOSPERM; ARTICLE; CONTROLLED STUDY; DISTRIBUTION OF MUTATIONAL FITNESS EFFECT; ENVIRONMENTAL FACTOR; GENE DELETION; GENETIC VARIABILITY; GENOTYPE; HOST; MOLECULAR EVOLUTION; NONHUMAN; NUCLEIC ACID BASE SUBSTITUTION; PLEIOTROPY; POTYVIRUS; RNA VIRUS; SPECIES DIFFERENCE; TOBACCO ETCH POTYVIRUS; VIRUS CELL INTERACTION; VIRUS MUTATION;

EID: 81755177852     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1002378     Document Type: Article
Times cited : (89)

References (47)
  • 1
    • 17844365567 scopus 로고    scopus 로고
    • Emerging pathogens: the epidemiology and evolution of species jumps
    • Woolhouse MEJ, Haydon DT, Antia R, (2005) Emerging pathogens: the epidemiology and evolution of species jumps. Trends Ecol Evol 20: 238-244.
    • (2005) Trends Ecol Evol , vol.20 , pp. 238-244
    • Woolhouse, M.E.J.1    Haydon, D.T.2    Antia, R.3
  • 3
    • 77951692453 scopus 로고    scopus 로고
    • The evolutionary genetics of emerging viruses
    • Holmes EC, (2009) The evolutionary genetics of emerging viruses. Annu Rev Ecol Evol Syst 40: 353-372.
    • (2009) Annu Rev Ecol Evol Syst , vol.40 , pp. 353-372
    • Holmes, E.C.1
  • 4
    • 77954318721 scopus 로고    scopus 로고
    • New experimental and theoretical approaches towards the understanding of the emergence of viral infections
    • Elena SF, Froissart R, (2010) New experimental and theoretical approaches towards the understanding of the emergence of viral infections. Phil Trans R Soc B 365: 1867-1869.
    • (2010) Phil Trans R Soc B , vol.365 , pp. 1867-1869
    • Elena, S.F.1    Froissart, R.2
  • 5
    • 4544348578 scopus 로고    scopus 로고
    • Emerging infectious diseases of plants: pathogen pollution, climate change and agrotechnological drivers
    • Anderson PK, Cunningham AA, Patel NG, Morales FJ, Epstein PR, et al. (2004) Emerging infectious diseases of plants: pathogen pollution, climate change and agrotechnological drivers. Trends Ecol Evol 19: 535-544.
    • (2004) Trends Ecol Evol , vol.19 , pp. 535-544
    • Anderson, P.K.1    Cunningham, A.A.2    Patel, N.G.3    Morales, F.J.4    Epstein, P.R.5
  • 6
    • 34748829764 scopus 로고    scopus 로고
    • Overviews of pathogen emergence: which pathogens emerge, when and why?
    • Cleaveland S, Haydon DT, Taylor L, (2007) Overviews of pathogen emergence: which pathogens emerge, when and why? Curr Top Microbiol Immunol 315: 85-111.
    • (2007) Curr Top Microbiol Immunol , vol.315 , pp. 85-111
    • Cleaveland, S.1    Haydon, D.T.2    Taylor, L.3
  • 7
    • 63949084990 scopus 로고    scopus 로고
    • Plant virus emergence and evolution: origins, new encounter scenarios, factors driving emergence, effects of changing world conditions, and prospects for control
    • Jones RAC, (2009) Plant virus emergence and evolution: origins, new encounter scenarios, factors driving emergence, effects of changing world conditions, and prospects for control. Virus Res 141: 113-130.
    • (2009) Virus Res , vol.141 , pp. 113-130
    • Jones, R.A.C.1
  • 10
    • 0034535109 scopus 로고    scopus 로고
    • Cost of host radiation in an RNA virus
    • Turner PE, Elena SF, (2000) Cost of host radiation in an RNA virus. Gentics 156: 1465-1470.
    • (2000) Gentics , vol.156 , pp. 1465-1470
    • Turner, P.E.1    Elena, S.F.2
  • 11
    • 33644781708 scopus 로고    scopus 로고
    • Pleiotropic costs of niche expansion in the RNA bacteriophage φ6
    • Duffy S, Turner PE, Burch CL, (2006) Pleiotropic costs of niche expansion in the RNA bacteriophage φ6. Genetics 172: 751-757.
    • (2006) Genetics , vol.172 , pp. 751-757
    • Duffy, S.1    Turner, P.E.2    Burch, C.L.3
  • 12
    • 34250749323 scopus 로고    scopus 로고
    • High frequency of mutations that expand the host range of an RNA virus
    • Ferris MT, Joyce P, Burch CL, (2007) High frequency of mutations that expand the host range of an RNA virus. Genetics 176: 1013-1022.
    • (2007) Genetics , vol.176 , pp. 1013-1022
    • Ferris, M.T.1    Joyce, P.2    Burch, C.L.3
  • 13
    • 55549141149 scopus 로고    scopus 로고
    • The pleiotropic cost of host-specialization in Tobacco etch potyvirus
    • Agudelo-Romero P, de la Iglesia F, Elena SF, (2008) The pleiotropic cost of host-specialization in Tobacco etch potyvirus. Infect Genet Evol 8: 806-814.
    • (2008) Infect Genet Evol , vol.8 , pp. 806-814
    • Agudelo-Romero, P.1    de la Iglesia, F.2    Elena, S.F.3
  • 14
    • 1842475949 scopus 로고    scopus 로고
    • Evolution of multihost parasites
    • Gandon S, (2004) Evolution of multihost parasites. Evolution 58: 455-469.
    • (2004) Evolution , vol.58 , pp. 455-469
    • Gandon, S.1
  • 15
    • 44649151205 scopus 로고    scopus 로고
    • Evolutionary genomics of host adaptation in Vesicular stomatitis virus
    • Remold SK, Rambaut A, Turner PE, (2008) Evolutionary genomics of host adaptation in Vesicular stomatitis virus. Mol Biol Evol 25: 1138-1147.
    • (2008) Mol Biol Evol , vol.25 , pp. 1138-1147
    • Remold, S.K.1    Rambaut, A.2    Turner, P.E.3
  • 16
    • 73649127602 scopus 로고    scopus 로고
    • The fitness effects of random mutations in single-stranded DNA and RNA bacteriophages
    • doi:10.1371/journal.pgen.1000742
    • Domingo-Calap P, Cuevas JM, Sanjuán R, (2009) The fitness effects of random mutations in single-stranded DNA and RNA bacteriophages. PLoS Genet 5: e1000742 doi:10.1371/journal.pgen.1000742.
    • (2009) PLoS Genet , vol.5
    • Domingo-Calap, P.1    Cuevas, J.M.2    Sanjuán, R.3
  • 17
    • 77955475761 scopus 로고    scopus 로고
    • Distribution of fitness effects caused by single-nucleotide substitutions in bacteriophage f1
    • Peris JB, Davis P, Cuevas JM, Nebot MR, Sanjuán R, (2010) Distribution of fitness effects caused by single-nucleotide substitutions in bacteriophage f1. Genetics 185: 603-609.
    • (2010) Genetics , vol.185 , pp. 603-609
    • Peris, J.B.1    Davis, P.2    Cuevas, J.M.3    Nebot, M.R.4    Sanjuán, R.5
  • 18
    • 0032748221 scopus 로고    scopus 로고
    • Rate of deleterious mutations and the distribution of its effects on fitness in Vesicular stomatitis virus
    • Elena SF, Moya A, (1999) Rate of deleterious mutations and the distribution of its effects on fitness in Vesicular stomatitis virus. J Evol Biol 12: 1078-1088.
    • (1999) J Evol Biol , vol.12 , pp. 1078-1088
    • Elena, S.F.1    Moya, A.2
  • 19
    • 2942565781 scopus 로고    scopus 로고
    • The distribution of fitness effects caused by single-nucleotide substitutions in an RNA virus
    • Sanjuán R, Moya A, Elena SF, (2004) The distribution of fitness effects caused by single-nucleotide substitutions in an RNA virus. Proc Natl Acad Sci USA 101: 8396-8401.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 8396-8401
    • Sanjuán, R.1    Moya, A.2    Elena, S.F.3
  • 20
    • 36348963100 scopus 로고    scopus 로고
    • Distribution of fitness and virulence effects caused by single-nucleotide substitutions in Tobacco etch virus
    • Carrasco P, de la Iglesia F, Elena SF, (2007) Distribution of fitness and virulence effects caused by single-nucleotide substitutions in Tobacco etch virus. J Virol 81: 12979-12984.
    • (2007) J Virol , vol.81 , pp. 12979-12984
    • Carrasco, P.1    de la Iglesia, F.2    Elena, S.F.3
  • 21
    • 77954324311 scopus 로고    scopus 로고
    • Mutational fitness effects in RNA and single-stranded DNA viruses: common patterns revealed by site-directed mutagenesis
    • Sanjuán R, (2010) Mutational fitness effects in RNA and single-stranded DNA viruses: common patterns revealed by site-directed mutagenesis. Phil Trans R Soc B 365: 1975-1982.
    • (2010) Phil Trans R Soc B , vol.365 , pp. 1975-1982
    • Sanjuán, R.1
  • 22
    • 33745267732 scopus 로고    scopus 로고
    • Effects of random mutations in the Human immunodeficiency virus type 1 transcriptional promoter on viral fitness in different host cell types
    • Van Opijnen T, Boerlijst MC, Berkhout B, (2006) Effects of random mutations in the Human immunodeficiency virus type 1 transcriptional promoter on viral fitness in different host cell types. J Virol 80: 6678-6685.
    • (2006) J Virol , vol.80 , pp. 6678-6685
    • Van Opijnen, T.1    Boerlijst, M.C.2    Berkhout, B.3
  • 23
    • 71849116163 scopus 로고    scopus 로고
    • Evolving gene expression: from G to E to G×E
    • Hodgins-Davies A, Townsend JP, (2010) Evolving gene expression: from G to E to G×E. Trends Ecol Evol 24: 649-658.
    • (2010) Trends Ecol Evol , vol.24 , pp. 649-658
    • Hodgins-Davies, A.1    Townsend, J.P.2
  • 24
    • 0024187005 scopus 로고
    • The evolution of ecological specialization
    • Futuyma DJ, Moreno G, (1988) The evolution of ecological specialization. Annu Rev Ecol Syst 19: 207-234.
    • (1988) Annu Rev Ecol Syst , vol.19 , pp. 207-234
    • Futuyma, D.J.1    Moreno, G.2
  • 25
    • 0024495795 scopus 로고
    • Genotype-environment interactions and the maintenance of polygenic variation
    • Gillespie JH, Turelli M, (1989) Genotype-environment interactions and the maintenance of polygenic variation. Genetics 121: 129-138.
    • (1989) Genetics , vol.121 , pp. 129-138
    • Gillespie, J.H.1    Turelli, M.2
  • 26
    • 0035949692 scopus 로고    scopus 로고
    • Contribution of individual random mutations to genotype-to-environment interactions in Escherichia coli
    • Remold SK, Lenski RE, (2001) Contribution of individual random mutations to genotype-to-environment interactions in Escherichia coli. Proc Natl Acad Sci USA 98: 11388-11393.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 11388-11393
    • Remold, S.K.1    Lenski, R.E.2
  • 27
    • 0033953251 scopus 로고    scopus 로고
    • Contributions of plant molecular systematics to studies of molecular evolution
    • Soltis DE, Soltis PS, (2000) Contributions of plant molecular systematics to studies of molecular evolution. Plant Mol Biol 42: 45-75.
    • (2000) Plant Mol Biol , vol.42 , pp. 45-75
    • Soltis, D.E.1    Soltis, P.S.2
  • 28
    • 4544245469 scopus 로고    scopus 로고
    • Positive selection of synonymous mutations in Vesicular stomatitis virus
    • Novella IS, Zárate S, Metzgar D, Ebendick-Corpus BE, (2004) Positive selection of synonymous mutations in Vesicular stomatitis virus. J Mol Biol 342: 1415-1421.
    • (2004) J Mol Biol , vol.342 , pp. 1415-1421
    • Novella, I.S.1    Zárate, S.2    Metzgar, D.3    Ebendick-Corpus, B.E.4
  • 29
    • 0027020232 scopus 로고
    • The nearly neutral theory of molecular evolution
    • Ohta T, (1992) The nearly neutral theory of molecular evolution. Annu Rev Ecol Syst 23: 263-286.
    • (1992) Annu Rev Ecol Syst , vol.23 , pp. 263-286
    • Ohta, T.1
  • 30
    • 1242296549 scopus 로고    scopus 로고
    • Model selection in ecology and evolution
    • Johnson JB, Omland KS, (2004) Model selection in ecology and evolution. Trends Ecol Evol 19: 101-108.
    • (2004) Trends Ecol Evol , vol.19 , pp. 101-108
    • Johnson, J.B.1    Omland, K.S.2
  • 31
    • 33846886349 scopus 로고    scopus 로고
    • The fitness effect of mutations across environments: a survey in light of fitness landscape models
    • Martin G, Lenormand T, (2006) The fitness effect of mutations across environments: a survey in light of fitness landscape models. Evolution 60: 2413-2427.
    • (2006) Evolution , vol.60 , pp. 2413-2427
    • Martin, G.1    Lenormand, T.2
  • 32
    • 34447546660 scopus 로고    scopus 로고
    • The distribution of fitness effects of new mutations
    • Eyre-Walker A, Keightley PD, (2007) The distribution of fitness effects of new mutations. Nat Rev Genet 8: 610-618.
    • (2007) Nat Rev Genet , vol.8 , pp. 610-618
    • Eyre-Walker, A.1    Keightley, P.D.2
  • 33
    • 79959992592 scopus 로고    scopus 로고
    • A biophysical protein folding model accounts for most mutational fitness effects in viruses
    • Wylie CS, Shakhnovich EI, (2011) A biophysical protein folding model accounts for most mutational fitness effects in viruses. Proc Natl Acad Sci USA 108: 9916-9921.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 9916-9921
    • Wylie, C.S.1    Shakhnovich, E.I.2
  • 34
    • 0009901903 scopus 로고    scopus 로고
    • An introduction to the evolutionary ecology of viruses
    • In Viral Ecology (ed. Hurst CJ). Academic Press: New York, USA
    • DeFilippis VR, Villareal LP, (2000) An introduction to the evolutionary ecology of viruses. pp. 126-208 In Viral Ecology (ed. Hurst CJ). Academic Press: New York, USA.
    • (2000) , pp. 126-208
    • DeFilippis, V.R.1    Villareal, L.P.2
  • 36
    • 0028556693 scopus 로고
    • Genotype-environment interactions and the estimation of the genomic mutation rate in Drosophila melanogaster
    • Kondrashov AS, Houle D, (1994) Genotype-environment interactions and the estimation of the genomic mutation rate in Drosophila melanogaster. Proc R Soc B 258: 221-227.
    • (1994) Proc R Soc B , vol.258 , pp. 221-227
    • Kondrashov, A.S.1    Houle, D.2
  • 38
    • 0033403509 scopus 로고    scopus 로고
    • Genetic load of the yeast Saccharomyces cerevisiae under diverse environmental conditions
    • Korona R, (1999) Genetic load of the yeast Saccharomyces cerevisiae under diverse environmental conditions. Evolution 53: 1966-1971.
    • (1999) Evolution , vol.53 , pp. 1966-1971
    • Korona, R.1
  • 39
    • 76249087913 scopus 로고    scopus 로고
    • Re-evaluating the costs and limits of adaptive phenotypic plasticity
    • Auld JR, Agrawal AA, Relyea RA, (2010) Re-evaluating the costs and limits of adaptive phenotypic plasticity. Proc R Soc B 277: 503-511.
    • (2010) Proc R Soc B , vol.277 , pp. 503-511
    • Auld, J.R.1    Agrawal, A.A.2    Relyea, R.A.3
  • 40
    • 0030417498 scopus 로고    scopus 로고
    • The contribution of new mutations to genotype-environment interaction for fitness in Drosophila melanogaster
    • Fry JD, Heinsohn SL, Mackay TFC, (1996) The contribution of new mutations to genotype-environment interaction for fitness in Drosophila melanogaster. Evolution 50: 2316-2327.
    • (1996) Evolution , vol.50 , pp. 2316-2327
    • Fry, J.D.1    Heinsohn, S.L.2    Mackay, T.F.C.3
  • 42
    • 33646360571 scopus 로고    scopus 로고
    • Different mutations in the genome-linked VPg of Potato virus Y confers virulence on the pvr2(3) resistance in pepper
    • Ayme V, Souche S, Caranta C, Jacquemond M, Chadoeuf J, et al. (2006) Different mutations in the genome-linked VPg of Potato virus Y confers virulence on the pvr2(3) resistance in pepper. Mol Plant-Microbe Interact 19: 557-563.
    • (2006) Mol Plant-Microbe Interact , vol.19 , pp. 557-563
    • Ayme, V.1    Souche, S.2    Caranta, C.3    Jacquemond, M.4    Chadoeuf, J.5
  • 43
    • 40949083511 scopus 로고    scopus 로고
    • Natural variation and functional analyses provide evidence for co-evolution between plant eIF4E and potyviral VPg
    • Charron C, Nicolaï M, Gallois JL, Robaglia C, Moury B, et al. (2008) Natural variation and functional analyses provide evidence for co-evolution between plant eIF4E and potyviral VPg. Plant J 54: 56-68.
    • (2008) Plant J , vol.54 , pp. 56-68
    • Charron, C.1    Nicolaï, M.2    Gallois, J.L.3    Robaglia, C.4    Moury, B.5
  • 44
    • 77950628398 scopus 로고    scopus 로고
    • Stability of Tobacco etch virus infectious clones in plasmid vectors
    • Bedoya LC, Daròs JA, (2010) Stability of Tobacco etch virus infectious clones in plasmid vectors. Virus Res 149: 234-240.
    • (2010) Virus Res , vol.149 , pp. 234-240
    • Bedoya, L.C.1    Daròs, J.A.2
  • 45
    • 33846092128 scopus 로고    scopus 로고
    • A real-time RT-PCR assay for quantifying the fitness of Tobacco etch virus in competition experiments
    • Carrasco P, Daròs JA, Agudelo-Romero P, Elena SF, (2007) A real-time RT-PCR assay for quantifying the fitness of Tobacco etch virus in competition experiments. J Virol Meth 139: 181-188.
    • (2007) J Virol Meth , vol.139 , pp. 181-188
    • Carrasco, P.1    Daròs, J.A.2    Agudelo-Romero, P.3    Elena, S.F.4
  • 46
    • 77954326325 scopus 로고    scopus 로고
    • Adaptation of Tobacco etch potyvirus to a susceptible ecotype of Arabidopsis thaliana capacitates it for systemic infection of resistant ecotypes
    • Lalić J, Agudelo-Romero P, Carrasco P, Elena SF, (2010) Adaptation of Tobacco etch potyvirus to a susceptible ecotype of Arabidopsis thaliana capacitates it for systemic infection of resistant ecotypes. Phil Trans R Soc B 65: 1997-2008.
    • (2010) Phil Trans R Soc B , vol.65 , pp. 1997-2008
    • Lalić, J.1    Agudelo-Romero, P.2    Carrasco, P.3    Elena, S.F.4
  • 47
    • 25444494901 scopus 로고    scopus 로고
    • Quantification strategies in real-time PCR
    • In A-Z of Quantitative PCR (ed. SA Bustin). International University Line: La Jolla, USA
    • Pfaffl MV, (2004) Quantification strategies in real-time PCR. pp. 87-112 In A-Z of Quantitative PCR (ed. SA Bustin). International University Line: La Jolla, USA.
    • (2004) , pp. 87-112
    • Pfaffl, M.V.1


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