-
1
-
-
17844365567
-
Emerging pathogens: the epidemiology and evolution of species jumps
-
Woolhouse MEJ, Haydon DT, Antia R, (2005) Emerging pathogens: the epidemiology and evolution of species jumps. Trends Ecol Evol 20: 238-244.
-
(2005)
Trends Ecol Evol
, vol.20
, pp. 238-244
-
-
Woolhouse, M.E.J.1
Haydon, D.T.2
Antia, R.3
-
2
-
-
51949109019
-
Cross-species transmission and the emergence of new epidemic diseases
-
Parrish CR, Holmes EC, Morens DM, Park EC, Burke DS, et al. (2008) Cross-species transmission and the emergence of new epidemic diseases. Microbiol Mol Biol Rev 72: 457-470.
-
(2008)
Microbiol Mol Biol Rev
, vol.72
, pp. 457-470
-
-
Parrish, C.R.1
Holmes, E.C.2
Morens, D.M.3
Park, E.C.4
Burke, D.S.5
-
3
-
-
77951692453
-
The evolutionary genetics of emerging viruses
-
Holmes EC, (2009) The evolutionary genetics of emerging viruses. Annu Rev Ecol Evol Syst 40: 353-372.
-
(2009)
Annu Rev Ecol Evol Syst
, vol.40
, pp. 353-372
-
-
Holmes, E.C.1
-
4
-
-
77954318721
-
New experimental and theoretical approaches towards the understanding of the emergence of viral infections
-
Elena SF, Froissart R, (2010) New experimental and theoretical approaches towards the understanding of the emergence of viral infections. Phil Trans R Soc B 365: 1867-1869.
-
(2010)
Phil Trans R Soc B
, vol.365
, pp. 1867-1869
-
-
Elena, S.F.1
Froissart, R.2
-
5
-
-
4544348578
-
Emerging infectious diseases of plants: pathogen pollution, climate change and agrotechnological drivers
-
Anderson PK, Cunningham AA, Patel NG, Morales FJ, Epstein PR, et al. (2004) Emerging infectious diseases of plants: pathogen pollution, climate change and agrotechnological drivers. Trends Ecol Evol 19: 535-544.
-
(2004)
Trends Ecol Evol
, vol.19
, pp. 535-544
-
-
Anderson, P.K.1
Cunningham, A.A.2
Patel, N.G.3
Morales, F.J.4
Epstein, P.R.5
-
6
-
-
34748829764
-
Overviews of pathogen emergence: which pathogens emerge, when and why?
-
Cleaveland S, Haydon DT, Taylor L, (2007) Overviews of pathogen emergence: which pathogens emerge, when and why? Curr Top Microbiol Immunol 315: 85-111.
-
(2007)
Curr Top Microbiol Immunol
, vol.315
, pp. 85-111
-
-
Cleaveland, S.1
Haydon, D.T.2
Taylor, L.3
-
7
-
-
63949084990
-
Plant virus emergence and evolution: origins, new encounter scenarios, factors driving emergence, effects of changing world conditions, and prospects for control
-
Jones RAC, (2009) Plant virus emergence and evolution: origins, new encounter scenarios, factors driving emergence, effects of changing world conditions, and prospects for control. Virus Res 141: 113-130.
-
(2009)
Virus Res
, vol.141
, pp. 113-130
-
-
Jones, R.A.C.1
-
8
-
-
79951520544
-
The evolutionary genetics of emerging plant RNA viruses
-
Elena SF, Bedhomme S, Carrasco P, Cuevas JM, de la Iglesia F, et al. (2011) The evolutionary genetics of emerging plant RNA viruses. Mol Plant-Microb Interact 24: 287-293.
-
(2011)
Mol Plant-Microb Interact
, vol.24
, pp. 287-293
-
-
Elena, S.F.1
Bedhomme, S.2
Carrasco, P.3
Cuevas, J.M.4
de la Iglesia, F.5
-
9
-
-
77956826336
-
Viral mutation rates
-
Sanjuán R, Nebot MR, Chirico N, Mansky LM, Belshaw R, (2010) Viral mutation rates. J Virol 84: 9733-9748.
-
(2010)
J Virol
, vol.84
, pp. 9733-9748
-
-
Sanjuán, R.1
Nebot, M.R.2
Chirico, N.3
Mansky, L.M.4
Belshaw, R.5
-
10
-
-
0034535109
-
Cost of host radiation in an RNA virus
-
Turner PE, Elena SF, (2000) Cost of host radiation in an RNA virus. Gentics 156: 1465-1470.
-
(2000)
Gentics
, vol.156
, pp. 1465-1470
-
-
Turner, P.E.1
Elena, S.F.2
-
11
-
-
33644781708
-
Pleiotropic costs of niche expansion in the RNA bacteriophage φ6
-
Duffy S, Turner PE, Burch CL, (2006) Pleiotropic costs of niche expansion in the RNA bacteriophage φ6. Genetics 172: 751-757.
-
(2006)
Genetics
, vol.172
, pp. 751-757
-
-
Duffy, S.1
Turner, P.E.2
Burch, C.L.3
-
12
-
-
34250749323
-
High frequency of mutations that expand the host range of an RNA virus
-
Ferris MT, Joyce P, Burch CL, (2007) High frequency of mutations that expand the host range of an RNA virus. Genetics 176: 1013-1022.
-
(2007)
Genetics
, vol.176
, pp. 1013-1022
-
-
Ferris, M.T.1
Joyce, P.2
Burch, C.L.3
-
13
-
-
55549141149
-
The pleiotropic cost of host-specialization in Tobacco etch potyvirus
-
Agudelo-Romero P, de la Iglesia F, Elena SF, (2008) The pleiotropic cost of host-specialization in Tobacco etch potyvirus. Infect Genet Evol 8: 806-814.
-
(2008)
Infect Genet Evol
, vol.8
, pp. 806-814
-
-
Agudelo-Romero, P.1
de la Iglesia, F.2
Elena, S.F.3
-
14
-
-
1842475949
-
Evolution of multihost parasites
-
Gandon S, (2004) Evolution of multihost parasites. Evolution 58: 455-469.
-
(2004)
Evolution
, vol.58
, pp. 455-469
-
-
Gandon, S.1
-
15
-
-
44649151205
-
Evolutionary genomics of host adaptation in Vesicular stomatitis virus
-
Remold SK, Rambaut A, Turner PE, (2008) Evolutionary genomics of host adaptation in Vesicular stomatitis virus. Mol Biol Evol 25: 1138-1147.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 1138-1147
-
-
Remold, S.K.1
Rambaut, A.2
Turner, P.E.3
-
16
-
-
73649127602
-
The fitness effects of random mutations in single-stranded DNA and RNA bacteriophages
-
doi:10.1371/journal.pgen.1000742
-
Domingo-Calap P, Cuevas JM, Sanjuán R, (2009) The fitness effects of random mutations in single-stranded DNA and RNA bacteriophages. PLoS Genet 5: e1000742 doi:10.1371/journal.pgen.1000742.
-
(2009)
PLoS Genet
, vol.5
-
-
Domingo-Calap, P.1
Cuevas, J.M.2
Sanjuán, R.3
-
17
-
-
77955475761
-
Distribution of fitness effects caused by single-nucleotide substitutions in bacteriophage f1
-
Peris JB, Davis P, Cuevas JM, Nebot MR, Sanjuán R, (2010) Distribution of fitness effects caused by single-nucleotide substitutions in bacteriophage f1. Genetics 185: 603-609.
-
(2010)
Genetics
, vol.185
, pp. 603-609
-
-
Peris, J.B.1
Davis, P.2
Cuevas, J.M.3
Nebot, M.R.4
Sanjuán, R.5
-
18
-
-
0032748221
-
Rate of deleterious mutations and the distribution of its effects on fitness in Vesicular stomatitis virus
-
Elena SF, Moya A, (1999) Rate of deleterious mutations and the distribution of its effects on fitness in Vesicular stomatitis virus. J Evol Biol 12: 1078-1088.
-
(1999)
J Evol Biol
, vol.12
, pp. 1078-1088
-
-
Elena, S.F.1
Moya, A.2
-
19
-
-
2942565781
-
The distribution of fitness effects caused by single-nucleotide substitutions in an RNA virus
-
Sanjuán R, Moya A, Elena SF, (2004) The distribution of fitness effects caused by single-nucleotide substitutions in an RNA virus. Proc Natl Acad Sci USA 101: 8396-8401.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 8396-8401
-
-
Sanjuán, R.1
Moya, A.2
Elena, S.F.3
-
20
-
-
36348963100
-
Distribution of fitness and virulence effects caused by single-nucleotide substitutions in Tobacco etch virus
-
Carrasco P, de la Iglesia F, Elena SF, (2007) Distribution of fitness and virulence effects caused by single-nucleotide substitutions in Tobacco etch virus. J Virol 81: 12979-12984.
-
(2007)
J Virol
, vol.81
, pp. 12979-12984
-
-
Carrasco, P.1
de la Iglesia, F.2
Elena, S.F.3
-
21
-
-
77954324311
-
Mutational fitness effects in RNA and single-stranded DNA viruses: common patterns revealed by site-directed mutagenesis
-
Sanjuán R, (2010) Mutational fitness effects in RNA and single-stranded DNA viruses: common patterns revealed by site-directed mutagenesis. Phil Trans R Soc B 365: 1975-1982.
-
(2010)
Phil Trans R Soc B
, vol.365
, pp. 1975-1982
-
-
Sanjuán, R.1
-
22
-
-
33745267732
-
Effects of random mutations in the Human immunodeficiency virus type 1 transcriptional promoter on viral fitness in different host cell types
-
Van Opijnen T, Boerlijst MC, Berkhout B, (2006) Effects of random mutations in the Human immunodeficiency virus type 1 transcriptional promoter on viral fitness in different host cell types. J Virol 80: 6678-6685.
-
(2006)
J Virol
, vol.80
, pp. 6678-6685
-
-
Van Opijnen, T.1
Boerlijst, M.C.2
Berkhout, B.3
-
23
-
-
71849116163
-
Evolving gene expression: from G to E to G×E
-
Hodgins-Davies A, Townsend JP, (2010) Evolving gene expression: from G to E to G×E. Trends Ecol Evol 24: 649-658.
-
(2010)
Trends Ecol Evol
, vol.24
, pp. 649-658
-
-
Hodgins-Davies, A.1
Townsend, J.P.2
-
24
-
-
0024187005
-
The evolution of ecological specialization
-
Futuyma DJ, Moreno G, (1988) The evolution of ecological specialization. Annu Rev Ecol Syst 19: 207-234.
-
(1988)
Annu Rev Ecol Syst
, vol.19
, pp. 207-234
-
-
Futuyma, D.J.1
Moreno, G.2
-
25
-
-
0024495795
-
Genotype-environment interactions and the maintenance of polygenic variation
-
Gillespie JH, Turelli M, (1989) Genotype-environment interactions and the maintenance of polygenic variation. Genetics 121: 129-138.
-
(1989)
Genetics
, vol.121
, pp. 129-138
-
-
Gillespie, J.H.1
Turelli, M.2
-
26
-
-
0035949692
-
Contribution of individual random mutations to genotype-to-environment interactions in Escherichia coli
-
Remold SK, Lenski RE, (2001) Contribution of individual random mutations to genotype-to-environment interactions in Escherichia coli. Proc Natl Acad Sci USA 98: 11388-11393.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 11388-11393
-
-
Remold, S.K.1
Lenski, R.E.2
-
27
-
-
0033953251
-
Contributions of plant molecular systematics to studies of molecular evolution
-
Soltis DE, Soltis PS, (2000) Contributions of plant molecular systematics to studies of molecular evolution. Plant Mol Biol 42: 45-75.
-
(2000)
Plant Mol Biol
, vol.42
, pp. 45-75
-
-
Soltis, D.E.1
Soltis, P.S.2
-
28
-
-
4544245469
-
Positive selection of synonymous mutations in Vesicular stomatitis virus
-
Novella IS, Zárate S, Metzgar D, Ebendick-Corpus BE, (2004) Positive selection of synonymous mutations in Vesicular stomatitis virus. J Mol Biol 342: 1415-1421.
-
(2004)
J Mol Biol
, vol.342
, pp. 1415-1421
-
-
Novella, I.S.1
Zárate, S.2
Metzgar, D.3
Ebendick-Corpus, B.E.4
-
29
-
-
0027020232
-
The nearly neutral theory of molecular evolution
-
Ohta T, (1992) The nearly neutral theory of molecular evolution. Annu Rev Ecol Syst 23: 263-286.
-
(1992)
Annu Rev Ecol Syst
, vol.23
, pp. 263-286
-
-
Ohta, T.1
-
30
-
-
1242296549
-
Model selection in ecology and evolution
-
Johnson JB, Omland KS, (2004) Model selection in ecology and evolution. Trends Ecol Evol 19: 101-108.
-
(2004)
Trends Ecol Evol
, vol.19
, pp. 101-108
-
-
Johnson, J.B.1
Omland, K.S.2
-
31
-
-
33846886349
-
The fitness effect of mutations across environments: a survey in light of fitness landscape models
-
Martin G, Lenormand T, (2006) The fitness effect of mutations across environments: a survey in light of fitness landscape models. Evolution 60: 2413-2427.
-
(2006)
Evolution
, vol.60
, pp. 2413-2427
-
-
Martin, G.1
Lenormand, T.2
-
32
-
-
34447546660
-
The distribution of fitness effects of new mutations
-
Eyre-Walker A, Keightley PD, (2007) The distribution of fitness effects of new mutations. Nat Rev Genet 8: 610-618.
-
(2007)
Nat Rev Genet
, vol.8
, pp. 610-618
-
-
Eyre-Walker, A.1
Keightley, P.D.2
-
33
-
-
79959992592
-
A biophysical protein folding model accounts for most mutational fitness effects in viruses
-
Wylie CS, Shakhnovich EI, (2011) A biophysical protein folding model accounts for most mutational fitness effects in viruses. Proc Natl Acad Sci USA 108: 9916-9921.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 9916-9921
-
-
Wylie, C.S.1
Shakhnovich, E.I.2
-
34
-
-
0009901903
-
An introduction to the evolutionary ecology of viruses
-
In Viral Ecology (ed. Hurst CJ). Academic Press: New York, USA
-
DeFilippis VR, Villareal LP, (2000) An introduction to the evolutionary ecology of viruses. pp. 126-208 In Viral Ecology (ed. Hurst CJ). Academic Press: New York, USA.
-
(2000)
, pp. 126-208
-
-
DeFilippis, V.R.1
Villareal, L.P.2
-
36
-
-
0028556693
-
Genotype-environment interactions and the estimation of the genomic mutation rate in Drosophila melanogaster
-
Kondrashov AS, Houle D, (1994) Genotype-environment interactions and the estimation of the genomic mutation rate in Drosophila melanogaster. Proc R Soc B 258: 221-227.
-
(1994)
Proc R Soc B
, vol.258
, pp. 221-227
-
-
Kondrashov, A.S.1
Houle, D.2
-
37
-
-
0028975542
-
Adaptive phenotypic plasticity: consensus and controversy
-
Via S, Gomulkiewicz R, de Jong G, Scheiner SM, Schlichting CD, et al. (1995) Adaptive phenotypic plasticity: consensus and controversy. Trends Ecol Evol 10: 212-217.
-
(1995)
Trends Ecol Evol
, vol.10
, pp. 212-217
-
-
Via, S.1
Gomulkiewicz, R.2
de Jong, G.3
Scheiner, S.M.4
Schlichting, C.D.5
-
38
-
-
0033403509
-
Genetic load of the yeast Saccharomyces cerevisiae under diverse environmental conditions
-
Korona R, (1999) Genetic load of the yeast Saccharomyces cerevisiae under diverse environmental conditions. Evolution 53: 1966-1971.
-
(1999)
Evolution
, vol.53
, pp. 1966-1971
-
-
Korona, R.1
-
39
-
-
76249087913
-
Re-evaluating the costs and limits of adaptive phenotypic plasticity
-
Auld JR, Agrawal AA, Relyea RA, (2010) Re-evaluating the costs and limits of adaptive phenotypic plasticity. Proc R Soc B 277: 503-511.
-
(2010)
Proc R Soc B
, vol.277
, pp. 503-511
-
-
Auld, J.R.1
Agrawal, A.A.2
Relyea, R.A.3
-
40
-
-
0030417498
-
The contribution of new mutations to genotype-environment interaction for fitness in Drosophila melanogaster
-
Fry JD, Heinsohn SL, Mackay TFC, (1996) The contribution of new mutations to genotype-environment interaction for fitness in Drosophila melanogaster. Evolution 50: 2316-2327.
-
(1996)
Evolution
, vol.50
, pp. 2316-2327
-
-
Fry, J.D.1
Heinsohn, S.L.2
Mackay, T.F.C.3
-
41
-
-
42449127637
-
Experimental evolution of plant RNA viruses
-
Elena SF, Agudelo-Romero P, Carrasco P, Codoñer FM, Martín S, et al. (2008) Experimental evolution of plant RNA viruses. Heredity 100: 478-483.
-
(2008)
Heredity
, vol.100
, pp. 478-483
-
-
Elena, S.F.1
Agudelo-Romero, P.2
Carrasco, P.3
Codoñer, F.M.4
Martín, S.5
-
42
-
-
33646360571
-
Different mutations in the genome-linked VPg of Potato virus Y confers virulence on the pvr2(3) resistance in pepper
-
Ayme V, Souche S, Caranta C, Jacquemond M, Chadoeuf J, et al. (2006) Different mutations in the genome-linked VPg of Potato virus Y confers virulence on the pvr2(3) resistance in pepper. Mol Plant-Microbe Interact 19: 557-563.
-
(2006)
Mol Plant-Microbe Interact
, vol.19
, pp. 557-563
-
-
Ayme, V.1
Souche, S.2
Caranta, C.3
Jacquemond, M.4
Chadoeuf, J.5
-
43
-
-
40949083511
-
Natural variation and functional analyses provide evidence for co-evolution between plant eIF4E and potyviral VPg
-
Charron C, Nicolaï M, Gallois JL, Robaglia C, Moury B, et al. (2008) Natural variation and functional analyses provide evidence for co-evolution between plant eIF4E and potyviral VPg. Plant J 54: 56-68.
-
(2008)
Plant J
, vol.54
, pp. 56-68
-
-
Charron, C.1
Nicolaï, M.2
Gallois, J.L.3
Robaglia, C.4
Moury, B.5
-
44
-
-
77950628398
-
Stability of Tobacco etch virus infectious clones in plasmid vectors
-
Bedoya LC, Daròs JA, (2010) Stability of Tobacco etch virus infectious clones in plasmid vectors. Virus Res 149: 234-240.
-
(2010)
Virus Res
, vol.149
, pp. 234-240
-
-
Bedoya, L.C.1
Daròs, J.A.2
-
45
-
-
33846092128
-
A real-time RT-PCR assay for quantifying the fitness of Tobacco etch virus in competition experiments
-
Carrasco P, Daròs JA, Agudelo-Romero P, Elena SF, (2007) A real-time RT-PCR assay for quantifying the fitness of Tobacco etch virus in competition experiments. J Virol Meth 139: 181-188.
-
(2007)
J Virol Meth
, vol.139
, pp. 181-188
-
-
Carrasco, P.1
Daròs, J.A.2
Agudelo-Romero, P.3
Elena, S.F.4
-
46
-
-
77954326325
-
Adaptation of Tobacco etch potyvirus to a susceptible ecotype of Arabidopsis thaliana capacitates it for systemic infection of resistant ecotypes
-
Lalić J, Agudelo-Romero P, Carrasco P, Elena SF, (2010) Adaptation of Tobacco etch potyvirus to a susceptible ecotype of Arabidopsis thaliana capacitates it for systemic infection of resistant ecotypes. Phil Trans R Soc B 65: 1997-2008.
-
(2010)
Phil Trans R Soc B
, vol.65
, pp. 1997-2008
-
-
Lalić, J.1
Agudelo-Romero, P.2
Carrasco, P.3
Elena, S.F.4
-
47
-
-
25444494901
-
Quantification strategies in real-time PCR
-
In A-Z of Quantitative PCR (ed. SA Bustin). International University Line: La Jolla, USA
-
Pfaffl MV, (2004) Quantification strategies in real-time PCR. pp. 87-112 In A-Z of Quantitative PCR (ed. SA Bustin). International University Line: La Jolla, USA.
-
(2004)
, pp. 87-112
-
-
Pfaffl, M.V.1
|