The fitness effect of mutations across environments: A survey in light of fitness landscape models

Evolution

Volumn 60, Issue 12, 2006, Pages 2413-2427

  Martin, Guillaume ^a,b   Lenormand, Thomas ^a  

^a CENTRE D ECOLOGIE FONCTIONNELLE ET EVOLUTIVE   (France)

^b UNIVERSITY OF LAUSANNE   (Switzerland)

Author keywords

Environmental stress; Fitness landscape; Genotype by environment interaction; Mutation; Survey

Indexed keywords

EMPIRICAL ANALYSIS; ENVIRONMENTAL STRESS; FITNESS; GENETIC ANALYSIS; GENOTYPE; GENOTYPE-ENVIRONMENT INTERACTION; LANDSCAPE; MUTATION; PHENOTYPE; SPECIALIZATION;

ADAPTATION; ANIMAL; ARTICLE; BIOLOGICAL MODEL; ENVIRONMENT; GENE EXPRESSION; MUTATION; STRESS;

ADAPTATION, PHYSIOLOGICAL; ANIMALS; ENVIRONMENT; GENE EXPRESSION; MODELS, BIOLOGICAL; MUTATION; STRESS;

EID: 33846886349     PISSN: 00143820     EISSN: 15585646     Source Type: Journal    
DOI: 10.1554/06-162.1     Document Type: Article

References (53)

1. Bai, Z. D. 1999. Methodologies in spectral analysis of large dimensional random matrices, a review. Stat. Sinica 9:611-662.
2. Burch, C. L., and L. Chao. 2004. Epistasis and its relationship to canalization in the RNA virus phi 6. Genetics 167:559-567.
3. Chang, S. M., and R. G. Shaw. 2003. The contribution of spontaneous mutation to variation in environmental response in Arabidopsis thaliana: responses to nutrients. Evolution 57:984-994.
4. Charlesworth, B., and D. Charlesworth. 1998. Some evolutionary consequences of deleterious mutations. Genetica 103:3-19.
5. Cooper, V. S., and R. E. Lenski. 2000. The population genetics of ecological specialization in evolving Escherichia coli populations. Nature 407:736-739.
6. Dean, A. M., D. E. Dykhuizen, and D. L. Hartl. 1986. Fitness as a function of beta galactosidase activity in Escherichia coli. Genet. Res. 48:1-8.
7. _. 1988. Fitness efects of amino-acid replacements in the beta-galactosidase of Escherichia coli. Mol. Biol. Evol. 5:469-485.
8. Dykhuizen, D. E., and A. M. Dean. 1990. Enzyme activity and fitness: evolution in solution. Trends Ecol. Evol. 5:257-262.
9. Dykhuizen, D. E., and D. L. Hartl. 1983. Functional effects of Pgi allozymes in Escherichia coli. Genetics 105:1-18.
10. Dykhuizen, D. E., A. M. Dean, and D. L. Hartl. 1987. Metabolic flux and fitness. Genetics 115:25-31.
11. Elena, S. F., and R. E. Lenski. 2003. Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation. Nat. Rev. Genet. 4:457-469.
12. Fernandez, J., and C. Lopez-Fanjul. 1997. Spontaneous mutational genotype-environment interaction for fitness-related traits in Drosophila melanogaster. Evolution 51:856-864.
13. Fisher, R. A. 1930. The genetical theory of natural selection. Oxford University Press, Oxford, U.K.
14. Fry, J. D. 1996. The evolution of host specialization: Are tradeoffs overrated? Am. Nat. 148:S84-S107.
15. Fry, J. D., and S. L. Heinsohn. 2002. Environment dependence of mutational parameters for viability in Drosophila melanogaster. Genetics 161:1155-1167.
16. Fry, J. D., S. L. Heinsohn, and T. F. C. Mackay. 1996. The contribution of new mutations to genotype-environment interaction for fitness in Drosophila melanogaster. Evolution 50:2316-2327.
17. Futuyma, D. J., and G. Moreno. 1988. The evolution of ecological specialization. Annu. Rev. Ecol. Syst. 19:207-233.
18. Garcia-Dorado, A., and J. M. Marin. 1998. Minimum distance estimation of mutational parameters for quantitative traits. Biometrics 54:1097-1114.
19. Garcia-Dorado, A., C. Lopez-Fanjul, and A. Caballero. 1999. Properties of spontaneous mutations affecting quantitative traits. Genet. Res. 74:341-350.
20. Gazave, L., C. Chevillon, T. Lenormand, M. Marquine, and M. Raymond. 2001. Dissecting the cost of insecticide resistance genes during the overwintering period of the mosquito Culex pipiens. Heredity 87:441-448.
21. Gilligan, D. M., and R. Frankham. 2003. Dynamics of genetic adaptation to captivity. Conserv. Genet. 4:189-197.
22. Hereford, J., T. F. Hansen, and D. Houle. 2004. Comparing strengths of directional selection: How strong is strong? Evolution 58:2133-2143.
23. Hermisson, J., and G. P. Wagner. 2004. The population genetic theory of hidden variation and genetic robustness. Genetics 168:2271-2284.
24. Kassen, R. 2002. The experimental evolution of specialists, generalists, and the maintenance of diversity. J. Evol. Biol. 15:173-190.
25. Kavanaugh, C. M., and R. G. Shaw. 2005. The contribution of spontaneous mutation to variation in environmental responses of Arabidopsis thaliana: responses to light. Evolution 59:266-275.
26. Kawecki, T. J., N. H. Barton, and J. D. Fry. 1997. Mutational collapse of fitness in marginal habitats and the evolution of ecological specialisation. J. Evol. Biol. 10:407-429.
27. Keightley, P. D. 1994. The distribution of mutation effects on viability in Drosophila melanogaster. Genetics 138:1315-1322.
28. _. 2004. Comparing analysis methods for mutation-accumulation data. Genetics 167:551-553.
29. Kingsolver, J. G., H. E. Hoekstra, J. M. Hoekstra, D. Berrigan, S. N. Vignieri, C. E. Hill, A. Hoang, P. Gibert, and P. Beerli. 2001. The strength of phenotypic selection in natural populations. Am. Nat. 157:245-261.
30. Kishony, R., and S. Leibler. 2003. Environmental stresses can alleviate the average deleterious effects of mutations. J. Biol. 2:14.
31. Kondrashov, A. S., and D. Houle. 1994. Genotype-environment interactions and the estimation of the genomic mutation rate in Drosophila melanogaster. Proc. R. Soc. Lond. B 258:221-227.
32. Korona, R. 1999. Genetic load of the yeast Saccharomyces cerevisiae under diverse environmental conditions. Evolution 53:1966-1971.
33. _. 2004. Experimental studies of deleterious mutation in Saccharomyces cerevisiae. Res. Microbiol. 155:301-310.
34. Lenormand, T. 2002. Gene flow and the limits to natural selection. Trends Ecol. Evol. 17:183-189.
35. Lynch, M., J. Blanchard, D. Houle, T. Kibota, S. Schultz, L. Vassilieva, and J. Willis. 1999. Perspective: Spontaneous deleterious mutation. Evolution 53:645-663.
36. MacLean, R. C., G. Bell, and P. B. Rainey. 2004. The evolution of a pleiotropic fitness tradeoff in Pseudomonas fluorescens. Proc. Natl. Acad. Sci. USA 101:8072-8077.
37. Martin, G., and T. Lenormand. 2006. A multivariate extension of Fisher's geometrical model and the distribution of mutation fitness effects across species. Evolution 60:893-907.
38. Morel, Y., and R. Barouki. 1999. Repression of gene expression by oxidative stress. Biochem. J. 342:481-496.
39. Mukai, T., S. I. Chigusa, L. E. Mettler, and J. F. Crow. 1972. Mutation rate and dominance of genes affecting viability in Drosophila melanogaster. Genetics 72:335-355.
40. Orr, H. A. 2000. Adaptation and the cost of complexity. Evolution 54:13-20.
41. Parsons, P. A. 1991. Evolutionary rates: stress and species boundaries. Annu. Rev. Ecol. Syst. 22:1-18.
42. Remold, S. K., and R. E. Lenski. 2001. Contribution of individual random mutations to genotype-by-environment interactions in Echerichia coli. Proc. Natl. Acad. Sci. USA 98:11388-11393.
43. _. 2004. Pervasive joint influence of epistasis and plasticity on mutational effects in Escherichia coli. Nat. Genet. 36:423-426.
44. Sokal, R., and F. Rohlf. 1995. Model II regression. Pp. 541-554. Biometry: the principle and practice of statistics in biological research. W. H. Freeman and Co., New York.
45. Sonna, L. A., J. Fujita, S. L. Gaffin, and C. M. Lilly. 2002. Invited review: effects of heat and cold stress on mammalian gene expression. J. Appl. Physiol. 92:1725-1742.
46. Szafraniec, K., R. H. Borts, and R. Korona. 2001. Environmental stress and mutational load in diploid strains of the yeast Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 98: 1107-1112.
47. Toone, W. M., and N. Jones. 1998. Stress-activated signalling pathways in yeast. Genes Cells 3:485-498.
48. Vassilieva, L. L., A. M. Hook, and M. Lynch. 2000. The fitness effects of spontaneous mutations in Caenorhabditis elegans. Evolution 54:1234-1246.
49. Welch, J. J., and D. Waxman. 2003. Modularity and the cost of complexity. Evolution 57:1723-1734.
50. Whitlock, M. C. 1996. The red queen beats the jack-of-all-trades: the limitations on the evolution of phenotypic plasticity and niche breadth. Am. Nat. 148:S65-S77.
51. Wright, B. E. 2004. Stress-directed adaptive mutations and evolution. Mol. Microbiol. 52:643-650.
52. Xu, J. P. 2004. Genotype-environment interactions of spontaneous mutations for vegetative fitness in the human pathogenic fungus Cryptococcus neoformans. Genetics 168:1177-1188.
53. Yang, H. P., A. Y. Tanikawa, W. A. Van Voorhies, J. C. Silva, and A. S. Kondrashov. 2001. Whole-genome effects of ethyl methanesulfonate-induced mutation on nine quantitative traits in outbred Drosophila melanogaster. Genetics 157:1257-1265.