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Volumn 49, Issue 5-6, 2012, Pages 319-330

A preliminary assessment of matK, rbcL and trnH-psbA as DNA barcodes for Calamus (Arecaceae) species in China with a note on ITS

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EID: 84870465776     PISSN: 00033847     EISSN: None     Source Type: Journal    
DOI: 10.5735/085.049.0603     Document Type: Article
Times cited : (33)

References (37)
  • 1
    • 0347420076 scopus 로고    scopus 로고
    • Coding and noncoding plastid DNA in palm systematics
    • Asmussen, C. B. & Chase, M. W. 2001: Coding and noncoding plastid DNA in palm systematics.-American Journal of Botany 88: 1103-1117.
    • (2001) American Journal of Botany , vol.88 , pp. 1103-1117
    • Asmussen, C.B.1    Chase, M.W.2
  • 3
    • 0034079633 scopus 로고    scopus 로고
    • Molecular phylogenetics of subfamily Calamoideae (Palmae) based on nrDNA ITS and cpDNA rps16 intron sequence data
    • Baker, W. J., Hedderson, T. A. & Dransfield, J. 2000a: Molecular phylogenetics of subfamily Calamoideae (Palmae) based on nrDNA ITS and cpDNA rps16 intron sequence data.-Molecular Phylogenetics and Evolution 14: 195-217.
    • (2000) Molecular Phylogenetics and Evolution , vol.14 , pp. 195-217
    • Baker, W.J.1    Hedderson, T.A.2    Dransfield, J.3
  • 4
    • 0034033935 scopus 로고    scopus 로고
    • Molecular phylogenetics of Calamus (Palmae) and related rattan genera based on 5S nrDNA spacer sequence data
    • Baker, W. J., Hedderson, T. A. & Dransfield, J. 2000b: Molecular phylogenetics of Calamus (Palmae) and related rattan genera based on 5S nrDNA spacer sequence data.-Molecular Phylogenetics and Evolution 14: 218-231.
    • (2000) Molecular Phylogenetics and Evolution , vol.14 , pp. 218-231
    • Baker, W.J.1    Hedderson, T.A.2    Dransfield, J.3
  • 8
    • 84870406707 scopus 로고    scopus 로고
    • Palmer
    • In: Li, H. (ed.), Science Press, Beijing
    • Chen, S. Y., Pei, S. J. & Wang, K. L. 2003: Palmer.-In: Li, H. (ed.), Flora of Yunnan, vol. 14: 1-99. Science Press, Beijing.
    • (2003) Flora of Yunnan , vol.14 , pp. 1-99
    • Chen, S.Y.1    Pei, S.J.2    Wang, K.L.3
  • 9
    • 83755207349 scopus 로고    scopus 로고
    • Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants
    • China Plant BOL Group
    • China Plant BOL Group 2011: Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants.-Proceedings of the National Academy of Sciences of the United States of America 108: 19641-19646.
    • (2011) Proceedings of the National Academy of Sciences of the United States of America , vol.108 , pp. 19641-19646
  • 11
    • 0036188663 scopus 로고    scopus 로고
    • Molecular phylogenetics of Caryophyllales based on nuclear 18S rDNA and plastid rbcL, atpB, and matK sequences
    • Cuénoud, P., Savolainen, V., Chatrou, L. W., Powell, M., Grayer, R. J. & Chase, M. W. 2002: Molecular phylogenetics of Caryophyllales based on nuclear 18S rDNA and plastid rbcL, atpB, and matK sequences.-American Journal of Botany 89: 132-144.
    • (2002) American Journal of Botany , vol.89 , pp. 132-144
    • Cuénoud, P.1    Savolainen, V.2    Chatrou, L.W.3    Powell, M.4    Grayer, R.J.5    Chase, M.W.6
  • 12
    • 0002594984 scopus 로고
    • A rapid DNA isolation procedure for small quantities of fresh leaf material
    • Doyle, J. & Doyle, J. 1987: A rapid DNA isolation procedure for small quantities of fresh leaf material.-Phytochemical Bulletin 19: 11-15.
    • (1987) Phytochemical Bulletin , vol.19 , pp. 11-15
    • Doyle, J.1    Doyle, J.2
  • 13
    • 0031008892 scopus 로고    scopus 로고
    • Taxonomic affinities of Medusagyne oppositefolia (Medusagynaceae)
    • Fay, M. F., Swensen, S. M. & Chase, M. W. 1997: Taxonomic affinities of Medusagyne oppositefolia (Medusagynaceae).-Kew Bulletin 52: 111-120.
    • (1997) Kew Bulletin , vol.52 , pp. 111-120
    • Fay, M.F.1    Swensen, S.M.2    Chase, M.W.3
  • 15
    • 42449146039 scopus 로고    scopus 로고
    • 5.8S motifs for the identification of pseudogenic ITS regions
    • Harpke, D. & Peterson, A. 2008: 5.8S motifs for the identification of pseudogenic ITS regions.-Botany 86: 300-305.
    • (2008) Botany , vol.86 , pp. 300-305
    • Harpke, D.1    Peterson, A.2
  • 17
    • 31344432889 scopus 로고    scopus 로고
    • The promise of DNA barcoding for taxonomy
    • Hebert, P. D. N. & Gregory, T. R. 2005: The promise of DNA barcoding for taxonomy.-System Biology 54: 852-859.
    • (2005) System Biology , vol.54 , pp. 852-859
    • Hebert, P.D.N.1    Gregory, T.R.2
  • 18
    • 8844220527 scopus 로고    scopus 로고
    • Identification of birds through DNA barcodes
    • doi:10.1371/journal.pbio.0020312
    • Hebert, P. D. N., Stoeckle, M. Y., Zemlak, T. S. & Francis, C. M. 2004: Identification of birds through DNA barcodes.-PLoS Biology 2(10), e312, doi:10.1371/journal.pbio.0020312.
    • (2004) PLoS Biology , vol.2 , Issue.10
    • Hebert, P.D.N.1    Stoeckle, M.Y.2    Zemlak, T.S.3    Francis, C.M.4
  • 19
    • 79957554546 scopus 로고    scopus 로고
    • Choosing and using a plant DNA barcode
    • doi:10.1371/journal.pone.0019254
    • Hollingsworth, P. M., Graham, S. W. & Little, D. P. 2011: Choosing and using a plant DNA barcode.-PLoS ONE 6(5), e19254, doi:10.1371/journal.pone.0019254.
    • (2011) PLoS ONE , vol.6 , Issue.5
    • Hollingsworth, P.M.1    Graham, S.W.2    Little, D.P.3
  • 20
    • 79957567311 scopus 로고    scopus 로고
    • DNA barcoding: A new tool for palm taxonomists?
    • Jeanson, M. L., Labat, J. N. & Little, D. P. 2011: DNA barcoding: a new tool for palm taxonomists?-Annals of Botany 108: 1445-1451.
    • (2011) Annals of Botany , vol.108 , pp. 1445-1451
    • Jeanson, M.L.1    Labat, J.N.2    Little, D.P.3
  • 23
    • 78650162567 scopus 로고    scopus 로고
    • DNA barcoding for the discrimination of Eurasian yews (Taxus L., Taxaceae) and the discovery of cryptic species
    • Liu, J., Möller, M., Gao, L. M., Zhang, D. Q. & Li, D. Z. 2011: DNA barcoding for the discrimination of Eurasian yews (Taxus L., Taxaceae) and the discovery of cryptic species.-Molecular Ecology Resources 11: 89-100.
    • (2011) Molecular Ecology Resources , vol.11 , pp. 89-100
    • Liu, J.1    Möller, M.2    Gao, L.M.3    Zhang, D.Q.4    Li, D.Z.5
  • 24
    • 33749535839 scopus 로고    scopus 로고
    • DNA barcoding and taxonomy in Diptera: A tale of high intraspecific variability and low identification success
    • Meier, R., Shiyang, K., Vaidya, G. & Ng, P. K. L. 2006: DNA barcoding and taxonomy in Diptera: a tale of high intraspecific variability and low identification success.-Systematic Biology 55: 715-728.
    • (2006) Systematic Biology , vol.55 , pp. 715-728
    • Meier, R.1    Shiyang, K.2    Vaidya, G.3    Ng, P.K.L.4
  • 25
    • 29144473686 scopus 로고    scopus 로고
    • DNA barcoding: Error rates based on comprehensive sampling
    • doi:10.1371/journal.pbio.0030422
    • Meyer, C. P. & Paulay, G. 2005: DNA barcoding: error rates based on comprehensive sampling.-PLoS Biology 3(12), e422, doi:10.1371/journal.pbio.0030422.
    • (2005) PLoS Biology , vol.3 , Issue.12
    • Meyer, C.P.1    Paulay, G.2
  • 26
    • 52249116519 scopus 로고    scopus 로고
    • Exploring the utility of three plastid loci for biocoding the filmy ferns (Hymenophyllaceae) of Moorea
    • Nitta, J. H. 2008: Exploring the utility of three plastid loci for biocoding the filmy ferns (Hymenophyllaceae) of Moorea.-Taxon 57: 725-736.
    • (2008) Taxon , vol.57 , pp. 725-736
    • Nitta, J.H.1
  • 28
    • 0031773680 scopus 로고    scopus 로고
    • ModelTest: Testing the model of DNA substitution
    • Posada, D. & Crandall, K. A. 1998: ModelTest: testing the model of DNA substitution.-Bioinformatics 14: 817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 29
    • 2442516230 scopus 로고    scopus 로고
    • Recent origin and phylogenetic utility of divergent ITS putative pseudogenes: A case study from Naucleeae (Rubiaceae)
    • Razafimandimbison, S. G., Kellogg, E. A. & Bremer, B. 2004: Recent origin and phylogenetic utility of divergent ITS putative pseudogenes: a case study from Naucleeae (Rubiaceae).-Systematic Biology 53: 177-192.
    • (2004) Systematic Biology , vol.53 , pp. 177-192
    • Razafimandimbison, S.G.1    Kellogg, E.A.2    Bremer, B.3
  • 30
    • 0031406079 scopus 로고    scopus 로고
    • Chloroplast DNA phylogeny, reticulate evolution and biogeography of Paeonia (Paeoniaceae)
    • Sang, T., Crawford, D. J. & Stuessy, T. F. 1997: Chloroplast DNA phylogeny, reticulate evolution and biogeography of Paeonia (Paeoniaceae).-American Journal of Botany 84: 1120-1136.
    • (1997) American Journal of Botany , vol.84 , pp. 1120-1136
    • Sang, T.1    Crawford, D.J.2    Stuessy, T.F.3
  • 31
    • 42649090839 scopus 로고    scopus 로고
    • DNA barcoding in the Cycadales: Testing the potential of proposed barcoding markers for species identification of cycads
    • doi:10.1371/journal.pone.0001154
    • Sass, C., Little, D. P., Stevenson, D. W. & Specht, C. D. 2007: DNA barcoding in the Cycadales: testing the potential of proposed barcoding markers for species identification of cycads.-PLoS ONE 2, e1154, doi:10.1371/journal.pone.0001154.
    • (2007) PLoS ONE , vol.2
    • Sass, C.1    Little, D.P.2    Stevenson, D.W.3    Specht, C.D.4
  • 33
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura, K., Dudley, J., Nei, M. & Kumar, S. 2007: MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0.-Molecular Biology and Evolution 24: 1596-1599.
    • (2007) Molecular Biology and Evolution , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 34
    • 0345393289 scopus 로고    scopus 로고
    • Paraphyly of Tarasa (Malvaceae) and diverse origins of the polyploid species
    • Tate, J. A. & Simpson, B. B. 2003: Paraphyly of Tarasa (Malvaceae) and diverse origins of the polyploid species.-Systematic Botany 28: 723-737.
    • (2003) Systematic Botany , vol.28 , pp. 723-737
    • Tate, J.A.1    Simpson, B.B.2
  • 35
    • 0031574072 scopus 로고    scopus 로고
    • The Clustal X windows interface: Flexible strategies for multiple sequences alignment aided by quality analysis tools
    • Thompson, J. D., Gibson, T. J., Jeanmougin, F. & Higgins, D. G. 1997: The Clustal X windows interface: flexible strategies for multiple sequences alignment aided by quality analysis tools.-Nucleic Acids Research 25: 4876-4882.
    • (1997) Nucleic Acids Research , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Jeanmougin, F.3    Higgins, D.G.4
  • 36
    • 0000432452 scopus 로고
    • Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
    • In: Innis, M. A., Gelfand, D. H., Sninsky, J. J. & White, T. J. (eds.), Academic Press, New York
    • White, T. J., Bruns, T., Lee, S. & Taylor, J. W. 1990: Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics.-In: Innis, M. A., Gelfand, D. H., Sninsky, J. J. & White, T. J. (eds.), PCR protocols: a guide to methods and applications: 315-322. Academic Press, New York.
    • (1990) PCR protocols: A guide to methods and applications , pp. 315-322
    • White, T.J.1    Bruns, T.2    Lee, S.3    Taylor, J.W.4
  • 37
    • 79956142645 scopus 로고    scopus 로고
    • Floristic geography of Calamus (Palmae: Calamoideae) in China
    • Xing, Y. W., Wang, K. L. & Yang, Y. M. 2006: Floristic geography of Calamus (Palmae: Calamoideae) in China.-Acta Botanica Yunnanica 28: 461-467.
    • (2006) Acta Botanica Yunnanica , vol.28 , pp. 461-467
    • Xing, Y.W.1    Wang, K.L.2    Yang, Y.M.3


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