메뉴 건너뛰기




Volumn 14, Issue 2, 2000, Pages 218-231

Molecular phylogenetics of Calamus (Palmae) and related rattan genera based on 5S nrDNA spacer sequence data

Author keywords

5S nrDNA nontranscribed spacer; Arecaceae; Calamoideae; Calamus; Calospatha; Ceratolobus; Cladistics; Daemonorops; Maximum likelihood; Molecular phylogeny; Palmae; Pogon otium; Rattan; Retispatha

Indexed keywords

CLONE; GENETIC LINE; GENETIC POLYMORPHISM; MOLECULAR PHYLOGENY; MONOPHYLY; NUCLEOTIDE SEQUENCE; PLANT GENOME; REPETITIVE DNA; SPACER DNA;

EID: 0034033935     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1006/mpev.1999.0697     Document Type: Article
Times cited : (72)

References (51)
  • 1
    • 0006831643 scopus 로고
    • The 5S DNA units of bread wheat (Triticum aestivum)
    • Appels R., Baum B. R., Clarke B. C. The 5S DNA units of bread wheat (Triticum aestivum). Pl. Syst. Evol. 183:1992;183-194.
    • (1992) Pl. Syst. Evol. , vol.183 , pp. 183-194
    • Appels, R.1    Baum, B.R.2    Clarke, B.C.3
  • 2
    • 0030391732 scopus 로고    scopus 로고
    • Genome differentiation in Aegilops. 2. Physical mapping of 5S and 18S-26S ribosomal RNA genes in diploid species
    • Badaeva E. D., Friebe B., Gill B. S. Genome differentiation in Aegilops. 2. Physical mapping of 5S and 18S-26S ribosomal RNA genes in diploid species. Genome. 39:1996;1150-1158.
    • (1996) Genome , vol.39 , pp. 1150-1158
    • Badaeva, E.D.1    Friebe, B.2    Gill, B.S.3
  • 3
    • 0034079633 scopus 로고    scopus 로고
    • Molecular phylogenetics of subfamily Calamoideae (Palmae) based on nrDNA ITS and cpDNA rps16 intron sequence data
    • Baker W. J., Hedderson T. A., Dransfield J. Molecular phylogenetics of subfamily Calamoideae (Palmae) based on nrDNA ITS and cpDNA rps16 intron sequence data. Mol. Phylogenet. Evol. 14:2000.
    • (2000) Mol. Phylogenet. Evol. , vol.14
    • Baker, W.J.1    Hedderson, T.A.2    Dransfield, J.3
  • 4
    • 0031789454 scopus 로고    scopus 로고
    • A monograph of Phoenix L. (Palmae: Coryphoideae)
    • Barrow S. C. A monograph of Phoenix L. (Palmae: Coryphoideae). Kew Bull. 53:1998;513-575.
    • (1998) Kew Bull. , vol.53 , pp. 513-575
    • Barrow, S.C.1
  • 5
    • 0002626601 scopus 로고
    • Evolutionary change at the 5S DNA loci of species in the Triticeae
    • Baum B. R., Appels R. Evolutionary change at the 5S DNA loci of species in the Triticeae. Pl. Syst. Evol. 183:1992;195-208.
    • (1992) Pl. Syst. Evol. , vol.183 , pp. 195-208
    • Baum, B.R.1    Appels, R.2
  • 6
    • 0028676173 scopus 로고
    • The molecular diversity of the 5S rRNA gene in barley (Hordeum vulgare)
    • Baum B. R., Johnson D. A. The molecular diversity of the 5S rRNA gene in barley (Hordeum vulgare). Genome. 37:1994;992-998.
    • (1994) Genome , vol.37 , pp. 992-998
    • Baum, B.R.1    Johnson, D.A.2
  • 7
    • 0000871897 scopus 로고
    • Systematic enumeration of the species of Calamus and Daemonorops, with diagnoses of the new ones
    • Beccari O. Systematic enumeration of the species of Calamus and Daemonorops, with diagnoses of the new ones. Rec. Bot. Surv. India. 2:1902;197-230.
    • (1902) Rec. Bot. Surv. India , vol.2 , pp. 197-230
    • Beccari, O.1
  • 8
    • 0001923848 scopus 로고
    • Asiatic Palms - Lepidocaryeae, Part I, The species of Calamus
    • Beccari O. Asiatic Palms - Lepidocaryeae, Part I, The species of Calamus. Ann. R. Bot. Gard. (Calcutta). 11:1908;1-518.
    • (1908) Ann. R. Bot. Gard. (Calcutta) , vol.11 , pp. 1-518
    • Beccari, O.1
  • 9
    • 0001923849 scopus 로고
    • Asiatic Palms - Lepidocaryeae, Part II, The species of Daemonorops
    • Beccari O. Asiatic Palms - Lepidocaryeae, Part II, The species of Daemonorops. Ann. R. Bot. Gard. (Calcutta). 12(1):1911;1-237.
    • (1911) Ann. R. Bot. Gard. (Calcutta) , vol.121 , pp. 1-237
    • Beccari, O.1
  • 10
    • 0001923848 scopus 로고
    • Asiatic Palms - Lepidocaryeae, Supplement to Part I, The species of Calamus
    • Beccari O. Asiatic Palms - Lepidocaryeae, Supplement to Part I, The species of Calamus. Ann. R. Bot. Gard. (Calcutta). 11(Appendix):1913;1-142.
    • (1913) Ann. R. Bot. Gard. (Calcutta) , vol.11 , pp. 1-142
    • Beccari, O.1
  • 11
    • 0001923849 scopus 로고
    • Asiatic Palms - Lepidocaryeae, Part III, The species of the genera Ceratolobus, Calospatha, Plectocomia, Plectocomiopsis, Myrialepis, Zalacca, Pigafetta, Korthalsia, Metroxylon, Eugeissona
    • Beccari O. Asiatic Palms - Lepidocaryeae, Part III, The species of the genera Ceratolobus, Calospatha, Plectocomia, Plectocomiopsis, Myrialepis, Zalacca, Pigafetta, Korthalsia, Metroxylon, Eugeissona. Ann. R. Bot. Gard. (Calcutta). 12(2):1918;1-231.
    • (1918) Ann. R. Bot. Gard. (Calcutta) , vol.122 , pp. 1-231
    • Beccari, O.1
  • 12
    • 0031035491 scopus 로고    scopus 로고
    • The evolution of ribosomal DNA: Divergent paralogues and phylogenetic implications
    • Buckler E. S., Ippolito A., Holtsford T. P. The evolution of ribosomal DNA: Divergent paralogues and phylogenetic implications. Genetics. 145:1997;821-832.
    • (1997) Genetics , vol.145 , pp. 821-832
    • Buckler, E.S.1    Ippolito, A.2    Holtsford, T.P.3
  • 13
    • 0000380945 scopus 로고
    • Silica gel: An ideal material for field preservation of leaf samples for DNA studies
    • Chase M. W., Hills H. H. Silica gel: An ideal material for field preservation of leaf samples for DNA studies. Taxon. 40:1991;215-220.
    • (1991) Taxon , vol.40 , pp. 215-220
    • Chase, M.W.1    Hills, H.H.2
  • 14
    • 0000791717 scopus 로고
    • Use of the polymerase chain reaction to detect spacer size heterogeneity in plant 5S-rRNA gene clusters and to locate such clusters in wheat Triticum aestivum L.)
    • Cox A. V., Bennett M. D., Dyer T. A. Use of the polymerase chain reaction to detect spacer size heterogeneity in plant 5S-rRNA gene clusters and to locate such clusters in wheat Triticum aestivum L.). Theor. Appl. Genet. 83:1992;684-690.
    • (1992) Theor. Appl. Genet. , vol.83 , pp. 684-690
    • Cox, A.V.1    Bennett, M.D.2    Dyer, T.A.3
  • 15
    • 0029971137 scopus 로고    scopus 로고
    • Polymorphism and concerted evolution in a tandemly repeated gene family: 5S ribosomal DNA in diploid and allopolyploid cottons
    • Cronn R. C., Zhao X., Paterson A. H., Wendel J. F. Polymorphism and concerted evolution in a tandemly repeated gene family: 5S ribosomal DNA in diploid and allopolyploid cottons. J. Mol. Evol. 42:1996;685-705.
    • (1996) J. Mol. Evol. , vol.42 , pp. 685-705
    • Cronn, R.C.1    Zhao, X.2    Paterson, A.H.3    Wendel, J.F.4
  • 16
    • 0029860943 scopus 로고    scopus 로고
    • Physical mapping of repetitive DNA sequences and 5S and 18S-26S rDNA in five wild species of the genus Hordeum
    • de Bustos A., Cuadrado A., Soler C., Jouve N. Physical mapping of repetitive DNA sequences and 5S and 18S-26S rDNA in five wild species of the genus Hordeum. Chromosome Res. 4:1996;491-499.
    • (1996) Chromosome Res. , vol.4 , pp. 491-499
    • De Bustos, A.1    Cuadrado, A.2    Soler, C.3    Jouve, N.4
  • 18
    • 0000479431 scopus 로고
    • Isolation of plant DNA from fresh tissue
    • Doyle J. J., Doyle J. L. Isolation of plant DNA from fresh tissue. Focus. 12:1988;13-15.
    • (1988) Focus , vol.12 , pp. 13-15
    • Doyle, J.J.1    Doyle, J.L.2
  • 19
    • 0343194120 scopus 로고
    • A monograph of Ceratolobus (Palmae)
    • Dransfield J. A monograph of Ceratolobus (Palmae). Kew Bull. 34:1979a;1-33.
    • (1979) Kew Bull. , vol.34 , pp. 1-33
    • Dransfield, J.1
  • 20
    • 0342324716 scopus 로고
    • Retispatha, a new Bornean rattan genus (Palmae: Lepidocaryoideae)
    • Dransfield J. Retispatha, a new Bornean rattan genus (Palmae: Lepidocaryoideae). Kew Bull. 34:1979b;529-536.
    • (1979) Kew Bull. , vol.34 , pp. 529-536
    • Dransfield, J.1
  • 22
    • 0343194119 scopus 로고
    • Pogonotium (Palmae: Lepidocaryoideae), a new genus related to Daemonorops
    • Dransfield J. Pogonotium (Palmae: Lepidocaryoideae), a new genus related to Daemonorops. Kew Bull. 34:1980;761-768.
    • (1980) Kew Bull. , vol.34 , pp. 761-768
    • Dransfield, J.1
  • 24
    • 0004157767 scopus 로고
    • Royal Botanic Gardens, Kew and Sarawak Forest Department
    • Dransfield, J. 1992, The Rattans of Sarawak, Royal Botanic Gardens, Kew and Sarawak Forest Department.
    • (1992) The Rattans of Sarawak
    • Dransfield, J.1
  • 25
    • 84963028421 scopus 로고
    • A successive approximations approach to character weighting
    • Farris J. S. A successive approximations approach to character weighting. Syst. Zool. 18:1969;374-385.
    • (1969) Syst. Zool. , vol.18 , pp. 374-385
    • Farris, J.S.1
  • 26
    • 84983540175 scopus 로고
    • The retention index and the rescaled consistency index
    • Farris J. S. The retention index and the rescaled consistency index. Cladistics. 5:1989;417-419.
    • (1989) Cladistics , vol.5 , pp. 417-419
    • Farris, J.S.1
  • 29
    • 0001068901 scopus 로고
    • Comparative morphology and development of inflorescence adnation in rattan palms
    • Fisher J. B., Dransfield J. Comparative morphology and development of inflorescence adnation in rattan palms. Bot. J. Linn. Soc. 75:1977;119-140.
    • (1977) Bot. J. Linn. Soc. , vol.75 , pp. 119-140
    • Fisher, J.B.1    Dransfield, J.2
  • 30
    • 0010936943 scopus 로고
    • The genus Daemonorops in Malaya
    • Furtado C. X. The genus Daemonorops in Malaya. Gard. Bull. Singapore. 14:1953;49-147.
    • (1953) Gard. Bull. Singapore , vol.14 , pp. 49-147
    • Furtado, C.X.1
  • 31
    • 0003029983 scopus 로고
    • The genus Calamus in the Malayan Peninsula
    • Furtado C. X. The genus Calamus in the Malayan Peninsula. Gard. Bull. Singapore. 15:1956;32-265.
    • (1956) Gard. Bull. Singapore , vol.15 , pp. 32-265
    • Furtado, C.X.1
  • 32
    • 0031154445 scopus 로고    scopus 로고
    • Consistency, characters, and the likelihood of correct phylogenetic inference
    • Givnish T. J., Sytsma K. J. Consistency, characters, and the likelihood of correct phylogenetic inference. Mol. Phylogenet. Evol. 7:1997;320-330.
    • (1997) Mol. Phylogenet. Evol. , vol.7 , pp. 320-330
    • Givnish, T.J.1    Sytsma, K.J.2
  • 33
    • 0005705790 scopus 로고
    • Estimating character weights during tree search
    • Goloboff P. A. Estimating character weights during tree search. Cladistics. 9:1993;83-91.
    • (1993) Cladistics , vol.9 , pp. 83-91
    • Goloboff, P.A.1
  • 34
    • 0000104721 scopus 로고
    • Structure and organization of the 5S rRNA genes (5S DNA) in Pinus radiata (Pinaceae)
    • Gorman S. W., Teasdale R. D., Cullis C. A. Structure and organization of the 5S rRNA genes (5S DNA) in Pinus radiata (Pinaceae). Pl. Syst. Evol. 183:1992;223-234.
    • (1992) Pl. Syst. Evol. , vol.183 , pp. 223-234
    • Gorman, S.W.1    Teasdale, R.D.2    Cullis, C.A.3
  • 35
    • 0025160913 scopus 로고
    • Organization of the 5S rRNA genes in the soybean Glycine max (L.) Merrill and conservation of the 5S rDNA repeat structure in higher plants
    • Gottlob-McHugh S. C., Lévesque M., MacKenzie K., Olson M., Yarosh O., Johnson D. A. Organization of the 5S rRNA genes in the soybean Glycine max (L.) Merrill and conservation of the 5S rDNA repeat structure in higher plants. Genome. 33:1990;486-494.
    • (1990) Genome , vol.33 , pp. 486-494
    • Gottlob-McHugh, S.C.1    Lévesque, M.2    MacKenzie, K.3    Olson, M.4    Yarosh, O.5    Johnson, D.A.6
  • 36
    • 0025967362 scopus 로고
    • 5S ribosomal RNA sequences inappropriate for phylogenetic reconstruction
    • Halanych K. M. 5S ribosomal RNA sequences inappropriate for phylogenetic reconstruction. Mol. Biol. Evol. 8:1991;249-253.
    • (1991) Mol. Biol. Evol. , vol.8 , pp. 249-253
    • Halanych, K.M.1
  • 37
    • 0027055554 scopus 로고
    • Signal, noise, and reliability in molecular phylogenetic analyses
    • Hillis D. M., Huelsenbeck J. P. Signal, noise, and reliability in molecular phylogenetic analyses. J. Hered. 83:1992;189-195.
    • (1992) J. Hered. , vol.83 , pp. 189-195
    • Hillis, D.M.1    Huelsenbeck, J.P.2
  • 38
    • 0030425120 scopus 로고    scopus 로고
    • Why genes tell different stories: The diploid genera of Triticeae (Gramineae)
    • Kellogg E. A., Appels R., Mason-Gamer R. J. Why genes tell different stories: The diploid genera of Triticeae (Gramineae). Syst. Bot. 21:1996;321-347.
    • (1996) Syst. Bot. , vol.21 , pp. 321-347
    • Kellogg, E.A.1    Appels, R.2    Mason-Gamer, R.J.3
  • 40
  • 41
    • 0000704724 scopus 로고
    • The 5S DNA units of Acacia species (Mimosaceae)
    • Playford J., Appels R., Baum B. R. The 5S DNA units of Acacia species (Mimosaceae). Pl. Syst. Evol. 183:1992;235-247.
    • (1992) Pl. Syst. Evol. , vol.183 , pp. 235-247
    • Playford, J.1    Appels, R.2    Baum, B.R.3
  • 42
    • 11944255719 scopus 로고
    • Reconstruction of organismal and gene phylogenies from data on multigene families: Concerted evolution, homoplasy, and confidence
    • Sanderson M. J., Doyle J. J. Reconstruction of organismal and gene phylogenies from data on multigene families: Concerted evolution, homoplasy, and confidence. Syst. Biol. 41:1992;4-17.
    • (1992) Syst. Biol. , vol.41 , pp. 4-17
    • Sanderson, M.J.1    Doyle, J.J.2
  • 44
    • 0000117161 scopus 로고
    • Intraspecific 5S rRNA gene variation in flax, Linum usitatissimum (Linaceae)
    • Schneeberger R. G., Cullis C. A. Intraspecific 5S rRNA gene variation in flax, Linum usitatissimum (Linaceae). Pl. Syst. Evol. 183:1992;265-280.
    • (1992) Pl. Syst. Evol. , vol.183 , pp. 265-280
    • Schneeberger, R.G.1    Cullis, C.A.2
  • 45
    • 34250086950 scopus 로고
    • Frequent duplication and deletion events in the 5S RNA genes and the associated spacer regions of the Triticeae
    • Scoles G. J., Gill B. S., Xin Z.-Y., Clarke B. C., McIntyre C. L., Chapman C., Appels R. Frequent duplication and deletion events in the 5S RNA genes and the associated spacer regions of the Triticeae. Pl. Syst. Evol. 160:1988;105-122.
    • (1988) Pl. Syst. Evol. , vol.160 , pp. 105-122
    • Scoles, G.J.1    Gill, B.S.2    Xin, Z.-Y.3    Clarke, B.C.4    McIntyre, C.L.5    Chapman, C.6    Appels, R.7
  • 46
    • 0026098851 scopus 로고
    • Assessing the reliability of 5S rRNA sequence data for phylogenetic analysis in green plants
    • Steele K. P., Holsinger K. E., Jansen R. K., Taylor D. W. Assessing the reliability of 5S rRNA sequence data for phylogenetic analysis in green plants. Mol. Biol. Evol. 8:1991;240-248.
    • (1991) Mol. Biol. Evol. , vol.8 , pp. 240-248
    • Steele, K.P.1    Holsinger, K.E.2    Jansen, R.K.3    Taylor, D.W.4
  • 47
    • 0031425508 scopus 로고    scopus 로고
    • Physical mapping of ribosomal DNA sites in Festuca arundinacea and related species by in situ hybridization
    • Thomas H. M., Harper J. A., Meredith M. R., Morgan W. G., King I. P. Physical mapping of ribosomal DNA sites in Festuca arundinacea and related species by in situ hybridization. Genome. 40:1997;406-410.
    • (1997) Genome , vol.40 , pp. 406-410
    • Thomas, H.M.1    Harper, J.A.2    Meredith, M.R.3    Morgan, W.G.4    King, I.P.5
  • 48
    • 0029365993 scopus 로고
    • Phylogeny of Eucalyptus and Angophora based on 5S rDNA spacer sequence data
    • Udovicic F., McFadden G. I., Ladiges P. Y. Phylogeny of Eucalyptus and Angophora based on 5S rDNA spacer sequence data. Mol. Phylogenet. Evol. 4:1995;247-256.
    • (1995) Mol. Phylogenet. Evol. , vol.4 , pp. 247-256
    • Udovicic, F.1    McFadden, G.I.2    Ladiges, P.Y.3
  • 50
    • 0002988314 scopus 로고
    • A study on the genus Calamus in China
    • Wei C. F. A study on the genus Calamus in China. Guihaia. 6:1986;17-40.
    • (1986) Guihaia , vol.6 , pp. 17-40
    • Wei, C.F.1
  • 51
    • 0028917850 scopus 로고
    • Bidirectional interlocus concerted evolution following allopolyploid speciation in cotton (Gossypium)
    • Wendel J. F., Schnabel A., Seelanan T. Bidirectional interlocus concerted evolution following allopolyploid speciation in cotton (Gossypium). Proc. Natl. Acad. Sci. USA. 92:1995;280-284.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 280-284
    • Wendel, J.F.1    Schnabel, A.2    Seelanan, T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.