메뉴 건너뛰기




Volumn 1828, Issue 1, 2013, Pages 4-14

Evolutionary analyses of gap junction protein families

Author keywords

Bayesian inference; Connexin; Innexin; Maximum likelihood; Molecular phylogeny; Pannexin

Indexed keywords

GAP JUNCTION PROTEIN; MEMBRANE PROTEIN; PANNEXIN; PANNEXIN 1; PANNEXIN 2; PANNEXIN 3; UNCLASSIFIED DRUG;

EID: 84870063171     PISSN: 00052736     EISSN: 18792642     Source Type: Journal    
DOI: 10.1016/j.bbamem.2012.02.007     Document Type: Review
Times cited : (114)

References (54)
  • 1
    • 58549103327 scopus 로고    scopus 로고
    • The origins of multicellularity and the early history of the genetic toolkit for animal development
    • A. Rokas The origins of multicellularity and the early history of the genetic toolkit for animal development Annu. Rev. Genet. 42 2008 235 251
    • (2008) Annu. Rev. Genet. , vol.42 , pp. 235-251
    • Rokas, A.1
  • 7
    • 0035012765 scopus 로고    scopus 로고
    • Innexins get into the gap
    • P. Phelan, and T.A. Starich Innexins get into the gap Bioessays 23 2001 388 396
    • (2001) Bioessays , vol.23 , pp. 388-396
    • Phelan, P.1    Starich, T.A.2
  • 8
    • 0035991948 scopus 로고    scopus 로고
    • Gap junctions: Structure and function (Review)
    • W.H. Evans, and P.E. Martin Gap junctions: structure and function (Review) Mol. Membr. Biol. 19 2002 121 136
    • (2002) Mol. Membr. Biol. , vol.19 , pp. 121-136
    • Evans, W.H.1    Martin, P.E.2
  • 10
    • 35348891428 scopus 로고    scopus 로고
    • Gap junctions: Basic structure and function
    • G. Mese, G. Richard, and T.W. White Gap junctions: basic structure and function J. Invest. Dermatol. 127 2007 2516 2524
    • (2007) J. Invest. Dermatol. , vol.127 , pp. 2516-2524
    • Mese, G.1    Richard, G.2    White, T.W.3
  • 11
    • 0042386241 scopus 로고    scopus 로고
    • Sequence and phylogenetic analyses of 4 TMS junctional proteins of animals: Connexins, innexins, claudins and occludins
    • V.B. Hua, A.B. Chang, J.H. Tchieu, N.M. Kumar, P.A. Nielsen, and M.H. Saier Jr. Sequence and phylogenetic analyses of 4 TMS junctional proteins of animals: connexins, innexins, claudins and occludins J. Membr. Biol. 194 2003 59 76
    • (2003) J. Membr. Biol. , vol.194 , pp. 59-76
    • Hua, V.B.1    Chang, A.B.2    Tchieu, J.H.3    Kumar, N.M.4    Nielsen, P.A.5    Saier Jr., M.H.6
  • 12
    • 18944394972 scopus 로고    scopus 로고
    • Evolution of gap junction proteins - The pannexin alternative
    • Y.V. Panchin Evolution of gap junction proteins - the pannexin alternative J. Exp. Biol. 208 2005 1415 1419
    • (2005) J. Exp. Biol. , vol.208 , pp. 1415-1419
    • Panchin, Y.V.1
  • 13
    • 77953910659 scopus 로고    scopus 로고
    • Phylogenetic and bioinformatic analysis of gap junction-related proteins, innexins, pannexins and connexins
    • D. Fushiki, Y. Hamada, R. Yoshimura, and Y. Endo Phylogenetic and bioinformatic analysis of gap junction-related proteins, innexins, pannexins and connexins Biomed. Res. 31 2010 133 142
    • (2010) Biomed. Res. , vol.31 , pp. 133-142
    • Fushiki, D.1    Hamada, Y.2    Yoshimura, R.3    Endo, Y.4
  • 14
    • 39149138488 scopus 로고    scopus 로고
    • Pannexins and gap junction protein diversity
    • V.I. Shestopalov, and Y. Panchin Pannexins and gap junction protein diversity Cell. Mol. Life Sci. 65 2008 376 394
    • (2008) Cell. Mol. Life Sci. , vol.65 , pp. 376-394
    • Shestopalov, V.I.1    Panchin, Y.2
  • 15
    • 34249060921 scopus 로고    scopus 로고
    • Gap junctional proteins of animals: The innexin/pannexin superfamily
    • M.R. Yen, and M.H. Saier Jr. Gap junctional proteins of animals: the innexin/pannexin superfamily Prog. Biophys. Mol. Biol. 94 2007 5 14
    • (2007) Prog. Biophys. Mol. Biol. , vol.94 , pp. 5-14
    • Yen, M.R.1    Saier Jr., M.H.2
  • 17
    • 70349969995 scopus 로고    scopus 로고
    • Pannexins, distant relatives of the connexin family with specific cellular functions?
    • C. D'Hondt, R. Ponsaerts, H. De Smedt, G. Bultynck, and B. Himpens Pannexins, distant relatives of the connexin family with specific cellular functions? Bioessays 31 2009 953 974
    • (2009) Bioessays , vol.31 , pp. 953-974
    • D'Hondt, C.1    Ponsaerts, R.2    De Smedt, H.3    Bultynck, G.4    Himpens, B.5
  • 18
    • 39849100440 scopus 로고    scopus 로고
    • Adherens and tight junctions: Structure, function and connections to the actin cytoskeleton
    • A. Hartsock, and W.J. Nelson Adherens and tight junctions: structure, function and connections to the actin cytoskeleton Biochim. Biophys. Acta 1778 2008 660 669
    • (2008) Biochim. Biophys. Acta , vol.1778 , pp. 660-669
    • Hartsock, A.1    Nelson, W.J.2
  • 19
    • 36549084087 scopus 로고    scopus 로고
    • Pannexin 1 and pannexin 3 are glycoproteins that exhibit many distinct characteristics from the connexin family of gap junction proteins
    • S. Penuela, R. Bhalla, X.Q. Gong, K.N. Cowan, S.J. Celetti, B.J. Cowan, D. Bai, Q. Shao, and D.W. Laird Pannexin 1 and pannexin 3 are glycoproteins that exhibit many distinct characteristics from the connexin family of gap junction proteins J. Cell Sci. 120 2007 3772 3783
    • (2007) J. Cell Sci. , vol.120 , pp. 3772-3783
    • Penuela, S.1    Bhalla, R.2    Gong, X.Q.3    Cowan, K.N.4    Celetti, S.J.5    Cowan, B.J.6    Bai, D.7    Shao, Q.8    Laird, D.W.9
  • 21
    • 62549143109 scopus 로고    scopus 로고
    • Connexins, pannexins, innexins: Novel roles of hemi-channels
    • E. Scemes, D.C. Spray, and P. Meda Connexins, pannexins, innexins: novel roles of hemi-channels Pflugers Arch. 457 2009 1207 1226
    • (2009) Pflugers Arch. , vol.457 , pp. 1207-1226
    • Scemes, E.1    Spray, D.C.2    Meda, P.3
  • 22
    • 33745712366 scopus 로고    scopus 로고
    • Pannexin: To gap or not to gap, is that a question?
    • G. Dahl, and S. Locovei Pannexin: to gap or not to gap, is that a question? IUBMB Life 58 2006 409 419
    • (2006) IUBMB Life , vol.58 , pp. 409-419
    • Dahl, G.1    Locovei, S.2
  • 23
    • 8444245596 scopus 로고    scopus 로고
    • Connexins and cell signaling in development and disease
    • C.J. Wei, X. Xu, and C.W. Lo Connexins and cell signaling in development and disease Annu. Rev. Cell Dev. Biol. 20 2004 811 838
    • (2004) Annu. Rev. Cell Dev. Biol. , vol.20 , pp. 811-838
    • Wei, C.J.1    Xu, X.2    Lo, C.W.3
  • 25
    • 20444415972 scopus 로고    scopus 로고
    • Innexins: Members of an evolutionarily conserved family of gap-junction proteins
    • P. Phelan Innexins: members of an evolutionarily conserved family of gap-junction proteins Biochim. Biophys. Acta 1711 2005 225 245
    • (2005) Biochim. Biophys. Acta , vol.1711 , pp. 225-245
    • Phelan, P.1
  • 26
    • 57649238652 scopus 로고    scopus 로고
    • Molecular mechanism of rectification at identified electrical synapses in the Drosophila giant fiber system
    • P. Phelan, L.A. Goulding, J.L. Tam, M.J. Allen, R.J. Dawber, J.A. Davies, and J.P. Bacon Molecular mechanism of rectification at identified electrical synapses in the Drosophila giant fiber system Curr. Biol. 18 2008 1955 1960
    • (2008) Curr. Biol. , vol.18 , pp. 1955-1960
    • Phelan, P.1    Goulding, L.A.2    Tam, J.L.3    Allen, M.J.4    Dawber, R.J.5    Davies, J.A.6    Bacon, J.P.7
  • 29
    • 23144452044 scopus 로고    scopus 로고
    • The HHpred interactive server for protein homology detection and structure prediction
    • J. Soding, A. Biegert, and A.N. Lupas The HHpred interactive server for protein homology detection and structure prediction Nucleic Acids Res. 33 2005 W244 W248
    • (2005) Nucleic Acids Res. , vol.33
    • Soding, J.1    Biegert, A.2    Lupas, A.N.3
  • 30
    • 34248532415 scopus 로고    scopus 로고
    • PROMALS: Towards accurate multiple sequence alignments of distantly related proteins
    • J. Pei, and N.V. Grishin PROMALS: towards accurate multiple sequence alignments of distantly related proteins Bioinformatics 23 2007 802 808
    • (2007) Bioinformatics , vol.23 , pp. 802-808
    • Pei, J.1    Grishin, N.V.2
  • 31
    • 0022706389 scopus 로고
    • The relation between the divergence of sequence and structure in proteins
    • C. Chothia, and A.M. Lesk The relation between the divergence of sequence and structure in proteins EMBO J. 5 1986 823 826
    • (1986) EMBO J. , vol.5 , pp. 823-826
    • Chothia, C.1    Lesk, A.M.2
  • 35
    • 30944460666 scopus 로고    scopus 로고
    • Phylogenetic analysis of three complete gap junction gene families reveals lineage-specific duplications and highly supported gene classes
    • S.D. Eastman, T.H. Chen, M.M. Falk, T.C. Mendelson, and M.K. Iovine Phylogenetic analysis of three complete gap junction gene families reveals lineage-specific duplications and highly supported gene classes Genomics 87 2006 265 274
    • (2006) Genomics , vol.87 , pp. 265-274
    • Eastman, S.D.1    Chen, T.H.2    Falk, M.M.3    Mendelson, T.C.4    Iovine, M.K.5
  • 36
    • 70449242819 scopus 로고
    • Transmission at the giant motor synapses of the crayfish
    • E.J. Furshpan, and D.D. Potter Transmission at the giant motor synapses of the crayfish J. Physiol. 145 1959 289 325
    • (1959) J. Physiol. , vol.145 , pp. 289-325
    • Furshpan, E.J.1    Potter, D.D.2
  • 38
    • 20744437001 scopus 로고    scopus 로고
    • RONN: The bio-basis function neural network technique applied to the detection of natively disordered regions in proteins
    • Z.R. Yang, R. Thomson, P. McNeil, and R.M. Esnouf RONN: the bio-basis function neural network technique applied to the detection of natively disordered regions in proteins Bioinformatics 21 2005 3369 3376
    • (2005) Bioinformatics , vol.21 , pp. 3369-3376
    • Yang, Z.R.1    Thomson, R.2    McNeil, P.3    Esnouf, R.M.4
  • 39
    • 1242274629 scopus 로고    scopus 로고
    • Major events in the genome evolution of vertebrates: Paranome age and size differ considerably between ray-finned fishes and land vertebrates
    • K. Vandepoele, W. De Vos, J.S. Taylor, A. Meyer, and Y. Van de Peer Major events in the genome evolution of vertebrates: paranome age and size differ considerably between ray-finned fishes and land vertebrates Proc. Natl. Acad. Sci. U.S.A. 101 2004 1638 1643
    • (2004) Proc. Natl. Acad. Sci. U.S.A. , vol.101 , pp. 1638-1643
    • Vandepoele, K.1    De Vos, W.2    Taylor, J.S.3    Meyer, A.4    Van De Peer, Y.5
  • 40
    • 77955293473 scopus 로고    scopus 로고
    • Pannexin1 and Pannexin2 channels show quaternary similarities to connexons and different oligomerization numbers from each other
    • C. Ambrosi, O. Gassmann, J.N. Pranskevich, D. Boassa, A. Smock, J. Wang, G. Dahl, C. Steinem, and G.E. Sosinsky Pannexin1 and Pannexin2 channels show quaternary similarities to connexons and different oligomerization numbers from each other J. Biol. Chem. 285 2010 24420 24431
    • (2010) J. Biol. Chem. , vol.285 , pp. 24420-24431
    • Ambrosi, C.1    Gassmann, O.2    Pranskevich, J.N.3    Boassa, D.4    Smock, A.5    Wang, J.6    Dahl, G.7    Steinem, C.8    Sosinsky, G.E.9
  • 41
    • 0023033171 scopus 로고
    • Cloning and characterization of human and rat liver cDNAs coding for a gap junction protein
    • N.M. Kumar, and N.B. Gilula Cloning and characterization of human and rat liver cDNAs coding for a gap junction protein J. Cell Biol. 103 1986 767 776
    • (1986) J. Cell Biol. , vol.103 , pp. 767-776
    • Kumar, N.M.1    Gilula, N.B.2
  • 42
    • 0022531305 scopus 로고
    • Molecular cloning of cDNA for rat liver gap junction protein
    • D.L. Paul Molecular cloning of cDNA for rat liver gap junction protein J. Cell Biol. 103 1986 123 134
    • (1986) J. Cell Biol. , vol.103 , pp. 123-134
    • Paul, D.L.1
  • 44
    • 84959798530 scopus 로고
    • Cases in which parsimony or compatibility methods will be positively misleading
    • J. Felsenstein Cases in which parsimony or compatibility methods will be positively misleading Syst. Biol. 27 1978 401
    • (1978) Syst. Biol. , vol.27 , pp. 401
    • Felsenstein, J.1
  • 45
    • 65449188232 scopus 로고    scopus 로고
    • Jalview Version 2-a multiple sequence alignment editor and analysis workbench
    • A.M. Waterhouse, J.B. Procter, D.M. Martin, M. Clamp, and G.J. Barton Jalview Version 2-a multiple sequence alignment editor and analysis workbench Bioinformatics 25 2009 1189 1191
    • (2009) Bioinformatics , vol.25 , pp. 1189-1191
    • Waterhouse, A.M.1    Procter, J.B.2    Martin, D.M.3    Clamp, M.4    Barton, G.J.5
  • 46
    • 77954257799 scopus 로고    scopus 로고
    • ConSurf 2010: Calculating evolutionary conservation in sequence and structure of proteins and nucleic acids
    • H. Ashkenazy, E. Erez, E. Martz, T. Pupko, and N. Ben-Tal ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids Nucleic Acids Res. 38 2010 W529 W533
    • (2010) Nucleic Acids Res. , vol.38
    • Ashkenazy, H.1    Erez, E.2    Martz, E.3    Pupko, T.4    Ben-Tal, N.5
  • 47
    • 0031743421 scopus 로고    scopus 로고
    • Profile hidden Markov models
    • S.R. Eddy Profile hidden Markov models Bioinformatics 14 1998 755 763
    • (1998) Bioinformatics , vol.14 , pp. 755-763
    • Eddy, S.R.1
  • 49
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • R.C. Edgar MUSCLE: multiple sequence alignment with high accuracy and high throughput Nucleic Acids Res. 32 2004 1792 1797
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 50
    • 67650757433 scopus 로고    scopus 로고
    • TrimAl: A tool for automated alignment trimming in large-scale phylogenetic analyses
    • S. Capella-Gutierrez, J.M. Silla-Martinez, and T. Gabaldon trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses Bioinformatics 25 2009 1972 1973
    • (2009) Bioinformatics , vol.25 , pp. 1972-1973
    • Capella-Gutierrez, S.1    Silla-Martinez, J.M.2    Gabaldon, T.3
  • 51
    • 18744382506 scopus 로고    scopus 로고
    • ProtTest: Selection of best-fit models of protein evolution
    • F. Abascal, R. Zardoya, and D. Posada ProtTest: selection of best-fit models of protein evolution Bioinformatics 21 2005 2104 2105
    • (2005) Bioinformatics , vol.21 , pp. 2104-2105
    • Abascal, F.1    Zardoya, R.2    Posada, D.3
  • 52
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • A. Stamatakis RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models Bioinformatics 22 2006 2688 2690
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 53
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • F. Ronquist, and J.P. Huelsenbeck MrBayes 3: Bayesian phylogenetic inference under mixed models Bioinformatics 19 2003 1572 1574
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 54
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • A.J. Drummond, and A. Rambaut BEAST: Bayesian evolutionary analysis by sampling trees BMC Evol. Biol. 7 2007 214
    • (2007) BMC Evol. Biol. , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.