-
2
-
-
66249144426
-
The structure and function of G-protein-coupled receptors
-
Rosenbaum DM, Rasmussen SG, Kobilka BK, (2009) The structure and function of G-protein-coupled receptors. Nature 459: 356-363.
-
(2009)
Nature
, vol.459
, pp. 356-363
-
-
Rosenbaum, D.M.1
Rasmussen, S.G.2
Kobilka, B.K.3
-
3
-
-
82455175695
-
The golden age of GPCR structural biology: any impact on drug design?
-
Kolb P, Klebe G, (2011) The golden age of GPCR structural biology: any impact on drug design? Angew Chem Int Ed 50: 11573-11575.
-
(2011)
Angew Chem Int Ed
, vol.50
, pp. 11573-11575
-
-
Kolb, P.1
Klebe, G.2
-
4
-
-
84860513814
-
Structure-based drug screening for G-protein-coupled receptors
-
Shoichet BK, Kobilka B, (2012) Structure-based drug screening for G-protein-coupled receptors. Trends Pharmacol Sci 33: 268-272.
-
(2012)
Trends Pharmacol Sci
, vol.33
, pp. 268-272
-
-
Shoichet, B.K.1
Kobilka, B.2
-
5
-
-
70349768241
-
Docking and chemoinformatic screens for new ligands and targets
-
Kolb P, Ferreira RS, Irwin JJ, Shoichet BK, (2009) Docking and chemoinformatic screens for new ligands and targets. Curr Opin Biotechnol 20: 429-436.
-
(2009)
Curr Opin Biotechnol
, vol.20
, pp. 429-436
-
-
Kolb, P.1
Ferreira, R.S.2
Irwin, J.J.3
Shoichet, B.K.4
-
6
-
-
84865228105
-
New insights for drug design from the X-ray crystallographic structures of GPCRs
-
Jacobson KA, Costanzi S, (2012) New insights for drug design from the X-ray crystallographic structures of GPCRs. Mol Pharmacol 82: 361-371.
-
(2012)
Mol Pharmacol
, vol.82
, pp. 361-371
-
-
Jacobson, K.A.1
Costanzi, S.2
-
7
-
-
78650919353
-
Importance of the extracellular loops in G protein-coupled receptors for ligand recognition and receptor activation
-
Peeters MC, van Westen GJP, Li Q, IJzerman AP, (2011) Importance of the extracellular loops in G protein-coupled receptors for ligand recognition and receptor activation. Trends Pharmacol Sci 32: 35-42.
-
(2011)
Trends Pharmacol Sci
, vol.32
, pp. 35-42
-
-
Peeters, M.C.1
van Westen, G.J.P.2
Li, Q.3
IJzerman, A.P.4
-
8
-
-
56749103466
-
The 2.6 Å Crystal Structure of a Human A2A Adenosine Receptor Bound to an Antagonist
-
Jaakola VP, Griffith MT, Hanson MA, Cherezov V, Chien EYT, et al. (2008) The 2.6 Å Crystal Structure of a Human A2A Adenosine Receptor Bound to an Antagonist. Science 322: 1211-1217.
-
(2008)
Science
, vol.322
, pp. 1211-1217
-
-
Jaakola, V.P.1
Griffith, M.T.2
Hanson, M.A.3
Cherezov, V.4
Chien, E.Y.T.5
-
9
-
-
0033038568
-
Comparison of CGS 15943, ZM 241385 and SCH 58261 as antagonists at human adenosine receptors
-
Ongini E, Dionisotti S, Gessi S, Irenius E, Fredholm BB, (1999) Comparison of CGS 15943, ZM 241385 and SCH 58261 as antagonists at human adenosine receptors. Naunyn Schmiedebergs Arch Pharmacol 359: 7-10.
-
(1999)
Naunyn Schmiedebergs Arch Pharmacol
, vol.359
, pp. 7-10
-
-
Ongini, E.1
Dionisotti, S.2
Gessi, S.3
Irenius, E.4
Fredholm, B.B.5
-
10
-
-
77952050479
-
Structure-Based Discovery of A2A Adenosine Receptor Ligands
-
Carlsson J, Yoo L, Gao ZG, Irwin JJ, Shoichet BK, et al. (2010) Structure-Based Discovery of A2A Adenosine Receptor Ligands. J Med Chem 53: 3748-3755.
-
(2010)
J Med Chem
, vol.53
, pp. 3748-3755
-
-
Carlsson, J.1
Yoo, L.2
Gao, Z.G.3
Irwin, J.J.4
Shoichet, B.K.5
-
11
-
-
33644770260
-
Adenosine receptors as therapeutic targets
-
Jacobson K, Gao Z, (2006) Adenosine receptors as therapeutic targets. Nat Rev Drug Discov 5: 247-264.
-
(2006)
Nat Rev Drug Discov
, vol.5
, pp. 247-264
-
-
Jacobson, K.1
Gao, Z.2
-
12
-
-
79952027612
-
Recent developments in adenosine receptor ligands and their potential as novel drugs
-
Mueller CE, Jacobson KA, (2011) Recent developments in adenosine receptor ligands and their potential as novel drugs. Biochim Biophys Acta 1808: 1290-1308.
-
(2011)
Biochim Biophys Acta
, vol.1808
, pp. 1290-1308
-
-
Mueller, C.E.1
Jacobson, K.A.2
-
13
-
-
0030511791
-
Protective effects of FK453, a potent nonxanthine adenosine A1 receptor antagonist, on glycerol-induced acute renal failure in rats
-
Terai T, Kusunoki T, Kita Y, Nakano K, Nishina N, et al. (1996) Protective effects of FK453, a potent nonxanthine adenosine A1 receptor antagonist, on glycerol-induced acute renal failure in rats. Drug Dev Res 39: 47-53.
-
(1996)
Drug Dev Res
, vol.39
, pp. 47-53
-
-
Terai, T.1
Kusunoki, T.2
Kita, Y.3
Nakano, K.4
Nishina, N.5
-
14
-
-
77950630873
-
Cardio-renal effects of the A1 adenosine receptor antagonist SLV320 in patients with heart failure
-
Mitrovic V, Seferovic P, Dodic S, Krotin M, Neskovic A, et al. (2009) Cardio-renal effects of the A1 adenosine receptor antagonist SLV320 in patients with heart failure. Circ Heart Fail 2: 523-531.
-
(2009)
Circ Heart Fail
, vol.2
, pp. 523-531
-
-
Mitrovic, V.1
Seferovic, P.2
Dodic, S.3
Krotin, M.4
Neskovic, A.5
-
15
-
-
65649133603
-
Rolofylline: a selective adenosine 1 receptor antagonist for the treatment of heart failure
-
Slawski MT, Givertz MM, (2009) Rolofylline: a selective adenosine 1 receptor antagonist for the treatment of heart failure. Exp Opin Pharmacother 10: 311-322.
-
(2009)
Exp Opin Pharmacother
, vol.10
, pp. 311-322
-
-
Slawski, M.T.1
Givertz, M.M.2
-
16
-
-
0027136282
-
Comparative protein modelling by satisfaction of spatial restraints
-
Sali A, Blundell TL, (1993) Comparative protein modelling by satisfaction of spatial restraints. J Mol Biol 234: 779-815.
-
(1993)
J Mol Biol
, vol.234
, pp. 779-815
-
-
Sali, A.1
Blundell, T.L.2
-
17
-
-
0033810049
-
Modeling of loops in protein structures
-
Fiser A, Do RKG, Sali A, (2000) Modeling of loops in protein structures. Protein Sci 9: 1753-1773.
-
(2000)
Protein Sci
, vol.9
, pp. 1753-1773
-
-
Fiser, A.1
Do, R.K.G.2
Sali, A.3
-
18
-
-
33749578940
-
Statistical potential for assessment and prediction of protein structures
-
Shen MY, Sali A, (2006) Statistical potential for assessment and prediction of protein structures. Protein Sci 15: 2507-2524.
-
(2006)
Protein Sci
, vol.15
, pp. 2507-2524
-
-
Shen, M.Y.1
Sali, A.2
-
19
-
-
77957055780
-
Integrated methods for the construction of three dimensional models and computational probing of structure function relations in G protein-coupled receptors
-
In: Sealfon SC, Conn PM, editors, San Diego: Academic Press
-
Ballesteros JA, Weinstein H (1995) Integrated methods for the construction of three dimensional models and computational probing of structure function relations in G protein-coupled receptors. In: Sealfon SC, Conn PM, editors. Methods in Neurosciences. San Diego: Academic Press. 366-428.
-
(1995)
Methods in Neurosciences
, pp. 366-428
-
-
Ballesteros, J.A.1
Weinstein, H.2
-
20
-
-
78650701635
-
Ligand-steered modeling and docking: A benchmarking study in class A G-protein-coupled receptors
-
Phatak SS, Gatica EA, Cavasotto CN (2010) Ligand-steered modeling and docking: A benchmarking study in class A G-protein-coupled receptors. J Chem Inf Model 50: 2119 2128.
-
(2010)
J Chem Inf Model
, vol.50
, pp. 2119-2128
-
-
Phatak, S.S.1
Gatica, E.A.2
Cavasotto, C.N.3
-
21
-
-
84986512474
-
CHARMM: A program for macromolecular energy, minimization, and dynamics calculations
-
Brooks BR, Bruccoleri RE, Olafson BD, States DJ, Swaminathan S, et al. (1983) CHARMM: A program for macromolecular energy, minimization, and dynamics calculations. J Comp Chem 4: 187-217.
-
(1983)
J Comp Chem
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
-
22
-
-
0035209620
-
International Union of Pharmacology. XXV. Nomenclature and classification of adenosine receptors
-
Fredholm BB, IJzerman AP, Jacobson KA, Klotz KN, Linden J, (2001) International Union of Pharmacology. XXV. Nomenclature and classification of adenosine receptors. Pharm Rev 53: 527-552.
-
(2001)
Pharm Rev
, vol.53
, pp. 527-552
-
-
Fredholm, B.B.1
IJzerman, A.P.2
Jacobson, K.A.3
Klotz, K.N.4
Linden, J.5
-
23
-
-
0033524916
-
Identification of the adenine binding site of the human A1 adenosine receptor
-
Rivkees SA, Barbhaiya H, IJzerman AP, (1999) Identification of the adenine binding site of the human A1 adenosine receptor. J Biol Chem 274: 3617-3621.
-
(1999)
J Biol Chem
, vol.274
, pp. 3617-3621
-
-
Rivkees, S.A.1
Barbhaiya, H.2
IJzerman, A.P.3
-
24
-
-
38149120549
-
QSAR study on a novel series of 8-azaadenine analogues proposed as A1 adenosine receptor antagonists
-
Massarelli I, Coi A, Pietra D, Nofal FA, Biagi G, et al. (2008) QSAR study on a novel series of 8-azaadenine analogues proposed as A1 adenosine receptor antagonists. Eur J Med Chem 43: 114-121.
-
(2008)
Eur J Med Chem
, vol.43
, pp. 114-121
-
-
Massarelli, I.1
Coi, A.2
Pietra, D.3
Nofal, F.A.4
Biagi, G.5
-
25
-
-
0037075142
-
Synthesis, biological activity, and molecular modeling investigation of new pyrazolo[4,3-e]-1,2,4-triazolo[1,5-c]pyrimidine derivatives as human A3 adenosine receptor antagonists
-
Baraldi PG, Cacciari B, Moro S, Spalluto G, Pastorin G, et al. (2002) Synthesis, biological activity, and molecular modeling investigation of new pyrazolo[4,3-e]-1,2,4-triazolo[1,5-c]pyrimidine derivatives as human A3 adenosine receptor antagonists. J Med Chem 45: 770-780.
-
(2002)
J Med Chem
, vol.45
, pp. 770-780
-
-
Baraldi, P.G.1
Cacciari, B.2
Moro, S.3
Spalluto, G.4
Pastorin, G.5
-
26
-
-
0037038549
-
Force Field Validation Using Protein Sidechain Prediction
-
Jacobson MP, Kaminski GA, Friesner RA, Rapp CS, (2002) Force Field Validation Using Protein Sidechain Prediction. J Phys Chem B 106: 11673-11680.
-
(2002)
J Phys Chem B
, vol.106
, pp. 11673-11680
-
-
Jacobson, M.P.1
Kaminski, G.A.2
Friesner, R.A.3
Rapp, C.S.4
-
27
-
-
1842532008
-
A Hierarchical Approach to All-Atom Loop Prediction
-
Jacobson MP, Pincus DL, Rapp CS, Day TJF, Honig B, et al. (2004) A Hierarchical Approach to All-Atom Loop Prediction. Proteins 55: 351-367.
-
(2004)
Proteins
, vol.55
, pp. 351-367
-
-
Jacobson, M.P.1
Pincus, D.L.2
Rapp, C.S.3
Day, T.J.F.4
Honig, B.5
-
28
-
-
84968923096
-
WOMBAT: World of Molecular Bioactivity
-
In: Oprea TI, editor, New York: Wiley-VCH
-
Olah M, Mracec M, Ostopovici L, Rad R, Bora A, et al. (2004) WOMBAT: World of Molecular Bioactivity. In: Oprea TI, editor. Chemoinformatics in Drug Discovery. New York: Wiley-VCH. 223-239.
-
(2004)
Chemoinformatics in Drug Discovery
, pp. 223-239
-
-
Olah, M.1
Mracec, M.2
Ostopovici, L.3
Rad, R.4
Bora, A.5
-
29
-
-
0020491251
-
A geometric approach to macromolecule-ligand interactions
-
Kuntz ID, Blaney JM, Oatley SJ, Langridge R, Ferrin TE, (1982) A geometric approach to macromolecule-ligand interactions. J Mol Biol 161: 269-288.
-
(1982)
J Mol Biol
, vol.161
, pp. 269-288
-
-
Kuntz, I.D.1
Blaney, J.M.2
Oatley, S.J.3
Langridge, R.4
Ferrin, T.E.5
-
30
-
-
84986432941
-
Automated docking with grid-based energy evaluation
-
Meng EC, Shoichet BK, Kuntz ID, (1992) Automated docking with grid-based energy evaluation. J Comput Chem 13: 505-524.
-
(1992)
J Comput Chem
, vol.13
, pp. 505-524
-
-
Meng, E.C.1
Shoichet, B.K.2
Kuntz, I.D.3
-
31
-
-
0027385177
-
Matching chemistry and shape in molecular docking
-
Shoichet BK, Kuntz ID, (1993) Matching chemistry and shape in molecular docking. Protein Eng 6: 723-732.
-
(1993)
Protein Eng
, vol.6
, pp. 723-732
-
-
Shoichet, B.K.1
Kuntz, I.D.2
-
33
-
-
13844312649
-
ZINC: a free database of commercially available compounds for virtual screening
-
Irwin JJ, Shoichet BK, (2005) ZINC: a free database of commercially available compounds for virtual screening. J Chem Inf Model 45: 177-182.
-
(2005)
J Chem Inf Model
, vol.45
, pp. 177-182
-
-
Irwin, J.J.1
Shoichet, B.K.2
-
34
-
-
84862192766
-
ChEMBL: a large-scale bioactivity database for drug discovery
-
Gaulton A, Bellis LJ, Bento AP, Chambers J, Davies M, et al. (2012) ChEMBL: a large-scale bioactivity database for drug discovery. Nucleic Acids Res 40: D1100-D1107.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Gaulton, A.1
Bellis, L.J.2
Bento, A.P.3
Chambers, J.4
Davies, M.5
-
35
-
-
0031931065
-
Comparative pharmacology of human adenosine receptor subtypes - characterization of stably transfected receptors in CHO cells
-
Klotz KN, Hessling J, Hegler J, Owman C, Kull B, et al. (1998) Comparative pharmacology of human adenosine receptor subtypes- characterization of stably transfected receptors in CHO cells. Naunyn-Schmiedeberg's Arch Pharmacol 357: 1-9.
-
(1998)
Naunyn-Schmiedeberg's Arch Pharmacol
, vol.357
, pp. 1-9
-
-
Klotz, K.N.1
Hessling, J.2
Hegler, J.3
Owman, C.4
Kull, B.5
-
36
-
-
0017184389
-
A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
-
Bradford MM, (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72: 248-254.
-
(1976)
Anal Biochem
, vol.72
, pp. 248-254
-
-
Bradford, M.M.1
-
37
-
-
0024854587
-
2-Chloro-N6-[3H]cyclopentyladenosine ([3H]CCPA)-a high affinity agonist radioligand for A1 adenosine receptors
-
Klotz KN, Lohse MJ, Schwabe U, Cristalli G, Vittori S, et al. (1989) 2-Chloro-N6-[3H]cyclopentyladenosine ([3H]CCPA)-a high affinity agonist radioligand for A1 adenosine receptors. Naunyn Schmiedebergs Arch Pharmacol 340: 679-683.
-
(1989)
Naunyn Schmiedebergs Arch Pharmacol
, vol.340
, pp. 679-683
-
-
Klotz, K.N.1
Lohse, M.J.2
Schwabe, U.3
Cristalli, G.4
Vittori, S.5
-
38
-
-
0024854441
-
[3H]CGS 21680, a selective A2 adenosine receptor agonist directly labels A2 receptors in rat brain
-
Jarvis MF, Schutz R, Hutchison AJ, Do E, Sills MA, et al. (1989) [3H]CGS 21680, a selective A2 adenosine receptor agonist directly labels A2 receptors in rat brain. J Pharmacol Exp Ther 251: 888-893.
-
(1989)
J Pharmacol Exp Ther
, vol.251
, pp. 888-893
-
-
Jarvis, M.F.1
Schutz, R.2
Hutchison, A.J.3
Do, E.4
Sills, M.A.5
-
39
-
-
0028179205
-
125I-4-aminobenzyl-5'-N-methylcarboxamidoadenosine, a high affinity radioligand for the rat A3 adenosine receptor
-
Olah ME, Gallo-Rodriguez C, Jacobson KA, Stiles GL, (1994) 125I-4-aminobenzyl-5'-N-methylcarboxamidoadenosine, a high affinity radioligand for the rat A3 adenosine receptor. Mol Pharmacol 45: 978-982.
-
(1994)
Mol Pharmacol
, vol.45
, pp. 978-982
-
-
Olah, M.E.1
Gallo-Rodriguez, C.2
Jacobson, K.A.3
Stiles, G.L.4
-
40
-
-
0015861774
-
Relationship between the inhibition constant (Ki) and the concentration of inhibitor which causes 50 per cent inhibition (I50) of an enzymatic reaction
-
Cheng YC, Prusoff HR, (1973) Relationship between the inhibition constant (Ki) and the concentration of inhibitor which causes 50 per cent inhibition (I50) of an enzymatic reaction. Biochem Pharmacol 22: 3099-3108.
-
(1973)
Biochem Pharmacol
, vol.22
, pp. 3099-3108
-
-
Cheng, Y.C.1
Prusoff, H.R.2
-
41
-
-
84863095992
-
Medicinal chemistry of A3 Adenosine Receptor modulators: pharmacological activities and therapeutic implications
-
Baraldi PG, Preti D, Borea PA, Varani K, (2012) Medicinal chemistry of A3 Adenosine Receptor modulators: pharmacological activities and therapeutic implications. J Med Chem 55: 5676-5703.
-
(2012)
J Med Chem
, vol.55
, pp. 5676-5703
-
-
Baraldi, P.G.1
Preti, D.2
Borea, P.A.3
Varani, K.4
-
42
-
-
84858034356
-
Discovery of 1,2,4-triazine derivatives as Adenosine A2A antagonists using structure based drug design
-
Congreve M, Andrews SP, Doré AS, Hollenstein K, Hurrell E, et al. (2012) Discovery of 1,2,4-triazine derivatives as Adenosine A2A antagonists using structure based drug design. J Med Chem 55: 1898-1903.
-
(2012)
J Med Chem
, vol.55
, pp. 1898-1903
-
-
Congreve, M.1
Andrews, S.P.2
Doré, A.S.3
Hollenstein, K.4
Hurrell, E.5
-
43
-
-
65249180145
-
Comparison of molecular fingerprint methods on the basis of biological profile data
-
Steffen A, Kogej T, Tyrchan C, Engkvist O, (2009) Comparison of molecular fingerprint methods on the basis of biological profile data. J Chem Inf Model 49: 338-347.
-
(2009)
J Chem Inf Model
, vol.49
, pp. 338-347
-
-
Steffen, A.1
Kogej, T.2
Tyrchan, C.3
Engkvist, O.4
-
44
-
-
77956021620
-
Similarity-potency trees: a method to search for SAR information in compound data sets and derive SAR rules
-
Wawer M, Bajorath J, (2010) Similarity-potency trees: a method to search for SAR information in compound data sets and derive SAR rules. J Chem Inf Model 50: 1395-1409.
-
(2010)
J Chem Inf Model
, vol.50
, pp. 1395-1409
-
-
Wawer, M.1
Bajorath, J.2
-
45
-
-
80054868459
-
Ligand discovery from a dopamine D3 receptor homology model and crystal structure
-
Carlsson J, Coleman RG, Setola V, Irwin JJ, Fan H, et al. (2011) Ligand discovery from a dopamine D3 receptor homology model and crystal structure. Nat Chem Biol 7: 769-778.
-
(2011)
Nat Chem Biol
, vol.7
, pp. 769-778
-
-
Carlsson, J.1
Coleman, R.G.2
Setola, V.3
Irwin, J.J.4
Fan, H.5
-
46
-
-
84859460667
-
Structure-based ligand discovery for the protein-protein interface of chemokine receptor CXCR4
-
Mysinger MM, Weiss DR, Ziarek JJ, Gravel S, Doak AK, et al. (2012) Structure-based ligand discovery for the protein-protein interface of chemokine receptor CXCR4. Proc Natl Acad Sci USA 109: 5517-5522.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 5517-5522
-
-
Mysinger, M.M.1
Weiss, D.R.2
Ziarek, J.J.3
Gravel, S.4
Doak, A.K.5
-
47
-
-
66149149851
-
Structure-based discovery of β2-adrenergic receptor ligands
-
Kolb P, Rosenbaum DM, Irwin JJ, Fung JJ, Kobilka BK, et al. (2009) Structure-based discovery of β2-adrenergic receptor ligands. Proc Natl Acad Sci USA 106: 6843-6848.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 6843-6848
-
-
Kolb, P.1
Rosenbaum, D.M.2
Irwin, J.J.3
Fung, J.J.4
Kobilka, B.K.5
-
48
-
-
53349102957
-
Use of the X-ray structure of the β2-adrenergic receptor for drug discovery. Part 2: Identification of active compounds
-
Sabio M, Jones K, Topiol S, (2008) Use of the X-ray structure of the β2-adrenergic receptor for drug discovery. Part 2: Identification of active compounds. Bioorg Med Chem Lett 18: 5391-5395.
-
(2008)
Bioorg Med Chem Lett
, vol.18
, pp. 5391-5395
-
-
Sabio, M.1
Jones, K.2
Topiol, S.3
-
49
-
-
77649204282
-
Structure-Based Discovery of Novel Chemotypes for Adenosine A2A Receptor Antagonists
-
Katritch V, Jaakola VP, Lane JR, Lin J, IJzerman AP, et al. (2010) Structure-Based Discovery of Novel Chemotypes for Adenosine A2A Receptor Antagonists. J Med Chem 53: 1799-1809.
-
(2010)
J Med Chem
, vol.53
, pp. 1799-1809
-
-
Katritch, V.1
Jaakola, V.P.2
Lane, J.R.3
Lin, J.4
IJzerman, A.P.5
-
50
-
-
85027927015
-
Structures of the CXCR4 chemokine GPCR with small-molecule and cyclic peptide antagonists
-
Wu B, Chien EY, Mol CD, Fenalti G, Liu W, et al. (2012) Structures of the CXCR4 chemokine GPCR with small-molecule and cyclic peptide antagonists. Science 330: 1066-1071.
-
(2012)
Science
, vol.330
, pp. 1066-1071
-
-
Wu, B.1
Chien, E.Y.2
Mol, C.D.3
Fenalti, G.4
Liu, W.5
|