메뉴 건너뛰기




Volumn 49, Issue 2, 2009, Pages 338-347

Comparison of molecular fingerprint methods on the basis of biological profile data

Author keywords

[No Author keywords available]

Indexed keywords

MOLECULES; PHYSICOCHEMICAL PROPERTIES; QUERY PROCESSING;

EID: 65249180145     PISSN: 15499596     EISSN: 1549960X     Source Type: Journal    
DOI: 10.1021/ci800326z     Document Type: Article
Times cited : (53)

References (31)
  • 1
    • 0037068532 scopus 로고    scopus 로고
    • Do structurally similar molecules have similar biological activity
    • Martin, Y. C.; Kofron, J. L.; Traphagen, L. M. Do structurally similar molecules have similar biological activity. J. Med. Chem. 2002, 45 (19), 4350-4358.
    • (2002) J. Med. Chem , vol.45 , Issue.19 , pp. 4350-4358
    • Martin, Y.C.1    Kofron, J.L.2    Traphagen, L.M.3
  • 2
    • 10344230435 scopus 로고    scopus 로고
    • Molecular similarity: A key technique in molecular informatics
    • Bender, A.; Glen, R. C. Molecular similarity: a key technique in molecular informatics. Org. Biomol. Chem. 2004, 2 (22), 3204-3218.
    • (2004) Org. Biomol. Chem , vol.2 , Issue.22 , pp. 3204-3218
    • Bender, A.1    Glen, R.C.2
  • 3
    • 0036740917 scopus 로고    scopus 로고
    • Why do we need so many chemical similarity search methods
    • Sheridan, R. P.; Kearsley, S. K. Why do we need so many chemical similarity search methods. Drug Discovery Today 2002, 7 (17), 903-911.
    • (2002) Drug Discovery Today , vol.7 , Issue.17 , pp. 903-911
    • Sheridan, R.P.1    Kearsley, S.K.2
  • 4
    • 2942700377 scopus 로고    scopus 로고
    • Comparison of fingerprint-based methods for virtual screening using multiple bioactive reference structures
    • Hert, J.; Willett, P.; Wilton, D. J.; Acklin, P.; Azzaoui, K.; Jacoby, E.; Schuffenhauer, A. Comparison of fingerprint-based methods for virtual screening using multiple bioactive reference structures. J. Chem. Inf. Comput. Sci. 2004, 44 (3), 1177-1185.
    • (2004) J. Chem. Inf. Comput. Sci , vol.44 , Issue.3 , pp. 1177-1185
    • Hert, J.1    Willett, P.2    Wilton, D.J.3    Acklin, P.4    Azzaoui, K.5    Jacoby, E.6    Schuffenhauer, A.7
  • 6
    • 0032149905 scopus 로고    scopus 로고
    • Feature trees: A new molecular similarity measure based on tree matching
    • Rarey, M.; Dixon, J. S. Feature trees: a new molecular similarity measure based on tree matching. J. Comput.-Aided Mol. Des. 1998, 12 (5), 471-490.
    • (1998) J. Comput.-Aided Mol. Des , vol.12 , Issue.5 , pp. 471-490
    • Rarey, M.1    Dixon, J.S.2
  • 7
    • 0000747830 scopus 로고
    • A Gaussian Description of Molecular Shape
    • Grant, J. A.; Pickup, B. T. A Gaussian Description of Molecular Shape. J. Phys. Chem. 1995, 99 (11), 3503-3510.
    • (1995) J. Phys. Chem , vol.99 , Issue.11 , pp. 3503-3510
    • Grant, J.A.1    Pickup, B.T.2
  • 9
    • 0033606988 scopus 로고    scopus 로고
    • New 4-Point Pharmacophore Method for Molecular Similarity and Diversity Applications: Overview of the Method and Applications, Including a Novel Approach to the Design of Combinatorial Libraries Containing Privileged Substructures
    • Mason, J. S.; Morize, I.; Menard, P. R.; Cheney, D. L.; Hulme, C.; Labaudiniere, R. F. New 4-Point Pharmacophore Method for Molecular Similarity and Diversity Applications: Overview of the Method and Applications, Including a Novel Approach to the Design of Combinatorial Libraries Containing Privileged Substructures. J. Med. Chem. 1999, 42 (17), 3251-3264.
    • (1999) J. Med. Chem , vol.42 , Issue.17 , pp. 3251-3264
    • Mason, J.S.1    Morize, I.2    Menard, P.R.3    Cheney, D.L.4    Hulme, C.5    Labaudiniere, R.F.6
  • 10
    • 0042202919 scopus 로고    scopus 로고
    • Chemography: The art of navigating in chemical space
    • Oprea, T. I.; Gottfries, J. Chemography: the art of navigating in chemical space. J. Comb. Chem. 2001, 3 (2), 157-166.
    • (2001) J. Comb. Chem , vol.3 , Issue.2 , pp. 157-166
    • Oprea, T.I.1    Gottfries, J.2
  • 11
    • 33846013232 scopus 로고    scopus 로고
    • Scaffold-Hopping: How Far Can You Jump
    • Schneider, G.; Schneider, P.; Renner, S. Scaffold-Hopping: How Far Can You Jump. QSAR Comb. Sci. 2006, 25 (12), 1162.
    • (2006) QSAR Comb. Sci , vol.25 , Issue.12 , pp. 1162
    • Schneider, G.1    Schneider, P.2    Renner, S.3
  • 12
    • 33745686155 scopus 로고    scopus 로고
    • Multifingerprint based similarity searches for targeted class compound selection
    • Kogej, T.; Engkvist, O.; Blomberg, N.; Muresan, S. Multifingerprint based similarity searches for targeted class compound selection. J. Chem. Inf. Model. 2006, 46 (3), 1201-1213.
    • (2006) J. Chem. Inf. Model , vol.46 , Issue.3 , pp. 1201-1213
    • Kogej, T.1    Engkvist, O.2    Blomberg, N.3    Muresan, S.4
  • 14
    • 0037432765 scopus 로고    scopus 로고
    • From knowing to controlling: A path from genomics to drugs using small molecule probes
    • Strausberg, R. L.; Schreiber, S. L. From knowing to controlling: a path from genomics to drugs using small molecule probes. Science 2003, 300 (5617), 294-295.
    • (2003) Science , vol.300 , Issue.5617 , pp. 294-295
    • Strausberg, R.L.1    Schreiber, S.L.2
  • 15
    • 34247198331 scopus 로고    scopus 로고
    • Clustering and rule-based classifications of chemical structures evaluated in the biological activity space
    • Schuffenhauer, A.; Brown, N.; Ertl, P.; Jenkins, J. L.; Selzer, P.; Hamon, J. Clustering and rule-based classifications of chemical structures evaluated in the biological activity space. J. Chem. Inf. Model. 2007, 47 (2), 325-336.
    • (2007) J. Chem. Inf. Model , vol.47 , Issue.2 , pp. 325-336
    • Schuffenhauer, A.1    Brown, N.2    Ertl, P.3    Jenkins, J.L.4    Selzer, P.5    Hamon, J.6
  • 16
    • 32344440237 scopus 로고    scopus 로고
    • Analysis of drug-induced effect patterns to link structure and side effects of medicines
    • Fliri, A. F.; Loging, W. T.; Thadeio, P. F.; Volkmann, R. A. Analysis of drug-induced effect patterns to link structure and side effects of medicines. Nat. Chem. Biol. 2005, 1 (7), 389-397.
    • (2005) Nat. Chem. Biol , vol.1 , Issue.7 , pp. 389-397
    • Fliri, A.F.1    Loging, W.T.2    Thadeio, P.F.3    Volkmann, R.A.4
  • 17
    • 47249145543 scopus 로고
    • Analysis of system structure-function relationships
    • 2007
    • Fliri, A. F.; Loging, W. T.; Volkmann, R. A. Analysis of system structure-function relationships. ChemMedChem 2007, 2 (12), 1774-1782.
    • (1774) ChemMedChem , vol.2 , Issue.12
    • Fliri, A.F.1    Loging, W.T.2    Volkmann, R.A.3
  • 18
    • 0037361990 scopus 로고    scopus 로고
    • Neighborhood behavior of in silico structural spaces with respect to in vitro activity spaces-a benchmark for neighborhood behavior assessment of different in silico similarity metrics
    • Horvath, D.; Jeandenans, C. Neighborhood behavior of in silico structural spaces with respect to in vitro activity spaces-a benchmark for neighborhood behavior assessment of different in silico similarity metrics. J. Chem. Inf. Comput. Sci. 2003, 43 (2), 691-698.
    • (2003) J. Chem. Inf. Comput. Sci , vol.43 , Issue.2 , pp. 691-698
    • Horvath, D.1    Jeandenans, C.2
  • 19
    • 0000381930 scopus 로고    scopus 로고
    • Prediction of Hydrophobic (Lipophilic) Properties of Small Organic Molecules Using Fragmental Methods: An Analysis of ALOGP and CLOGP Methods
    • Ghose, A. K.; Viswanadhan, V. N.; Wendoloski, J. J. Prediction of Hydrophobic (Lipophilic) Properties of Small Organic Molecules Using Fragmental Methods: An Analysis of ALOGP and CLOGP Methods. J. Phys. Chem. 1998, 102 (21), 3762-3772.
    • (1998) J. Phys. Chem , vol.102 , Issue.21 , pp. 3762-3772
    • Ghose, A.K.1    Viswanadhan, V.N.2    Wendoloski, J.J.3
  • 20
    • 18344367660 scopus 로고    scopus 로고
    • LINGO, an efficient holographic text based method to calculate biophysical properties and intermo-lecular similarities
    • Vidal, D.; Thormann, M.; Pons, M. LINGO, an efficient holographic text based method to calculate biophysical properties and intermo-lecular similarities. J. Chem. Inf. Model. 2005, 45 (2), 386-393.
    • (2005) J. Chem. Inf. Model , vol.45 , Issue.2 , pp. 386-393
    • Vidal, D.1    Thormann, M.2    Pons, M.3
  • 22
    • 0033523672 scopus 로고    scopus 로고
    • Scaffold- Hopping by Topological Pharmacophore Search: A Contribution to Virtual Screening
    • Schneider, G.; Neidhart, W.; Giller, T.; Schmid, G. "Scaffold- Hopping" by Topological Pharmacophore Search: A Contribution to Virtual Screening. Angew. Chem., Int. Ed. Engl. 1999, 38 (19), 2894-2896.
    • (1999) Angew. Chem., Int. Ed. Engl , vol.38 , Issue.19 , pp. 2894-2896
    • Schneider, G.1    Neidhart, W.2    Giller, T.3    Schmid, G.4
  • 25
    • 5544290537 scopus 로고    scopus 로고
    • Similarity searching of chemical databases using atom environment descriptors (MOL-PRINT 2D): Evaluation of performance
    • Bender, A.; Mussa, H. Y.; Glen, R. C.; Reiling, S. Similarity searching of chemical databases using atom environment descriptors (MOL-PRINT 2D): evaluation of performance. J. Chem. Inf. Comput. Sci. 2004, 44 (5), 1708-1718.
    • (2004) J. Chem. Inf. Comput. Sci , vol.44 , Issue.5 , pp. 1708-1718
    • Bender, A.1    Mussa, H.Y.2    Glen, R.C.3    Reiling, S.4
  • 26
    • 65249111291 scopus 로고    scopus 로고
    • Pipeline Pilot. In Basic Chemistry User Guide; Scitegic Inc.: San Diego, 2007.
    • Pipeline Pilot. In Basic Chemistry User Guide; Scitegic Inc.: San Diego, 2007.
  • 27
    • 65249166258 scopus 로고    scopus 로고
    • Manuscript to be published
    • Kogej, T. Manuscript to be published.
    • Kogej, T.1
  • 29
    • 65249119070 scopus 로고    scopus 로고
    • R Development Core Team. A Language and Environment for Statistical Computing, R package version 2.5.0; R Foundation for Statistical Computing: Vienna, Austria, 2007
    • R Development Core Team. A Language and Environment for Statistical Computing, R package version 2.5.0; R Foundation for Statistical Computing: Vienna, Austria, 2007.
  • 30
    • 0000008146 scopus 로고
    • Comparing partitions
    • Hubert, L.; Arabie, P. Comparing partitions. J. Classif 1985, 2 (1), 193-218.
    • (1985) J. Classif , vol.2 , Issue.1 , pp. 193-218
    • Hubert, L.1    Arabie, P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.