Erratum: Supporting information of real-time fluorescent image analysis of dna spot hybridization kinetics to assess microarray spot heterogeneity (Analytical Chemistry (2012) 84:21 (9379-9387) DOI:10.1021/ac302165h);Real-time fluorescent image analysis of DNA spot hybridization kinetics to assess microarray spot heterogeneity

Analytical Chemistry

Volumn 84, Issue 21, 2012, Pages 9379-9387

  Rao, Archana N ^a   Rodesch, Christopher K ^b   Grainger, David W ^a,c  

^a UNIVERSITY OF UTAH   (United States)

^b UNIVERSITY OF UTAH SCHOOL OF MEDICINE   (United States)

^c University of Utah   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; ENERGY TRANSFER; FORSTER RESONANCE ENERGY TRANSFER; KINETICS; POINT CONTACTS; PROBES;

ASSAY TECHNOLOGIES; DENSITY DISTRIBUTIONS; FLUORESCENCE INTENSITIES; HYBRIDIZATION EFFICIENCY; IN-SITU HYBRIDIZATION; REAL-TIME FLUORESCENT; SURFACE HYBRIDIZATIONS; TARGET CONCENTRATIONS;

FLUOROPHORES;

CARBOCYANINE; CYANINE DYE 5; DNA; DNA PROBE; FLUORESCENT DYE;

BLEACHING; CHEMISTRY; CONFOCAL MICROSCOPY; DNA MICROARRAY; DNA PROBE; FLUORESCENCE MICROSCOPY; KINETICS; NUCLEIC ACID HYBRIDIZATION; PROCEDURES; TIME;

CARBOCYANINES; DNA; DNA PROBES; FLUORESCENT DYES; KINETICS; MICROSCOPY, CONFOCAL; MICROSCOPY, FLUORESCENCE; NUCLEIC ACID HYBRIDIZATION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PHOTOBLEACHING; TIME FACTORS;

EID: 84868517549     PISSN: 00032700     EISSN: 15206882     Source Type: Journal    
DOI: 10.1021/ac400555y     Document Type: Erratum

References (73)

1. Stears, R. L.; Martinsky, T.; Schena, M. Nat. Med. 2003, 9 (1) 140-145
2. Šášik, R.; Woelk, C. H.; Corbeil, J. J. Mol. Endocrinol. 2004, 33 (1) 1-9
3. Simon, R.; Radmacher, M. D.; Dobbin, K.; McShane, L. M. J. Natl. Cancer Inst. 2003, 95 (1) 14-18
4. Wu, P.; Castner, D. G.; Grainger, D. W. J. Biomater. Sci., Polym. Ed. 2008, 19 (6) 725-753
5. Zou, S.; He, H.-J.; Zong, Y.; Shi, L.; Wang, L. DNA Microarrays: Applications, Future Trends, and the Need for Standardization. Standardization and Quality Assurance in Fluorescence Measurements II; Springer Series on Fluorescence, Vol. 8; Springer: New York, 2008; pp 215-237.
6. Shi, L.; Campbell, G.; Jones, W. D.; Campagne, F.; Wen, Z. Nat. Biotechnol. 2010, 28 (8) 827-838
7. Shi, L. Nat. Biotechnol. 2006, 24 (9) 1151-1161
8. Zammatteo, N.; Jeanmart, L.; Hamels, S.; Courtois, S.; Louette, P.; Hevesi, L.; Remacle, J. Anal. Biochem. 2000, 280 (1) 143-150
9. Peterson, A. W.; Heaton, R. J.; Georgiadis, R. M. Nucleic Acids Res. 2001, 29 (24) 5163-5168
10. Chou, C. C.; Chen, C. H.; Lee, T. T.; Peck, K. Nucleic Acids Res. 2004, 32 (12) e99
11. Chan, V.; Graves, D. J.; McKenzie, S. E. Biophys. J. 1995, 69 (6) 2243-2255
12. Dai, H.; Meyer, M.; Stepaniants, S.; Ziman, M.; Stoughton, R. Nucleic Acids Res. 2002, 30 (16) e86
13. Heaton, R. J.; Peterson, A. W.; Georgiadis, R. M. Proc. Natl. Acad. Sci. U.S.A. 2001, 98 (7) 3701-3704
14. Metzger, S. W.; Lockhead, M. J.; Grainger, D. W. Improving Performance in Protein-Based Microarrays: Surface Chemistries Enable Application of Protein Microarray Technologies to Diagnostics. IVD Technol. [Online] 2002, Feature Articles, Manufacturing & Processing Technologies, p 10. http://www.ivdtechnology.com/article/improving-performance-protein-based- microarrays (accessed August 21, 2012).
15. Dandy, D. S.; Wu, P.; Grainger, D. W. Proc. Natl. Acad. Sci. U.S.A. 2007, 104 (20) 8223-8228
16. Levicky, R.; Herne, T. M.; Tarlov, M. J.; Satija, S. K. J. Am. Chem. Soc. 1998, 120 (38) 9787-9792
17. Lee, C. Y.; Gong, P.; Harbers, G. M.; Grainger, D. W.; Castner, D. G.; Gamble, L. J. Anal. Chem. 2006, 78 (10) 3316-3325
18. Demers, L. M.; Mirkin, C. A.; Mucic, R. C.; Reynolds Iii, R. A.; Letsinger, R. L.; Elghanian, R.; Viswanadham, G. Anal. Chem. 2000, 72 (22) 5535-5541
19. Gong, P.; Levicky, R. Proc. Natl. Acad. Sci. U.S.A. 2008, 105 (14) 5301-5306
20. Hassibi, A.; Vikalo, H.; Riechmann, J. L.; Hassibi, B. Nucleic Acids Res. 2009, 37 (20) e132
21. Axelrod, D.; Wang, M. D. Biophys. J. 1994, 66 (3) 588-600
22. Vainrub, A.; Pettitt, B. M. J. Am. Chem. Soc. 2003, 125 (26) 7798-7799
23. Vainrub, A.; Pettitt, B. M. Phys. Rev. E: Stat., Nonlinear, Soft Matter. Phys. 2002, 66 (4) 041905/1-041905/4
24. Halperin, A.; Buhot, A.; Zhulina, E. B. J. Phys.: Condens. Matter 2006, 18 (18) S463-S490
25. Halperin, A. S.; Buhot, A.; Zhulina, E. B. Biophys. J. 2004, 86 (2) 718-730
26. Irving, D.; Gong, P.; Levicky, R. J. Phys. Chem. B 2010, 114 (22) 7631-7640
27. Held, G. A.; Grinstein, G.; Tu, Y. Proc. Natl. Acad. Sci. U.S.A. 2003, 100 (13) 7575-7580
28. Ota, N.; Hirano, K.; Warashina, M.; Andrus, A.; Mullah, B.; Hatanaka, K.; Taira, K. Nucleic Acids Res. 1998, 26 (3) 735-743
29. Mearns, F. J.; Wong, E. L. S.; Short, K.; Hibbert, D. B.; Gooding, J. J. Electroanalysis 2006, 18 (19-20) 1971-1981
30. Ambia-Garrido, J.; Vainrub, A.; Pettitt, B. M. Comput. Phys. Commun. 2010, 181 (12) 2001-2007
31. Morriss-Andrews, A.; Rottler, J.; Plotkin, S. S. J. Chem. Phys. 2010, 132 (3) 035105
32. Shen, G.; Tercero, N.; Gaspard, M. A.; Varughese, B.; Shepard, K.; Levicky, R. J. Am. Chem. Soc. 2006, 128 (26) 8427-8433
33. Halperin, A.; Buhot, A.; Zhulina, E. B. Biophys. J. 2005, 89 (2) 796-811
34. Lassalle, N.; Vieil, E.; Correia, J. P.; Abrantes, L. M. Biosens. Bioelectron. 2001, 16 (4-5) 295-303
35. Fritz, J.; Cooper, E. B.; Gaudet, S.; Sorger, P. K.; Manalis, S. R. Proc. Natl. Acad. Sci. U.S.A. 2002, 99 (22) 14142-14146
36. Abel, A. P.; Weller, M. G.; Duveneck, G. L.; Ehrat, M.; Widmer, H. M. Anal. Chem. 1996, 68 (17) 2905-2912
37. Peterlinz, K. A.; Georgiadis, R. M.; Herne, T. M.; Tarlov, M. J. J. Am. Chem. Soc. 1997, 119 (14) 3401-3402
38. Wang, J.; Cai, X.; Tian, B.; Shiraishi, H. Analyst 1996, 121 (7) 965-970
39. Siontorou, C. G.; Nikolelis, D. P.; Miernik, A.; Krull, U. J. Electrochim. Acta 1998, 43 (23) 3611-3617
40. Gaylord, B. S.; Heeger, A. J.; Bazan, G. C. J. Am. Chem. Soc. 2003, 125 (4) 896-900
41. Iqbal, A.; Arslan, S.; Okumus, B.; Wilson, T. J.; Giraud, G.; Norman, D. G.; Ha, T.; Lilley, D. M. J. Proc. Natl. Acad. Sci. U.S.A. 2008, 105 (32) 11176-11181
42. Schwille, P.; Oehlenschlager, F.; Walter, N. G. Biochemistry (Moscow) 1996, 35 (31) 10182-10193
43. Nie, S.; Chiu, D. T.; Zare, R. N. Anal. Chem. 1995, 67 (17) 2849-2857
44. Clegg, R. M. Rev. Mol. Biotechnol. 2002, 82 (3) 177-179
45. Sapsford, K. E.; Berti, L.; Medintz, I. L. Angew. Chem., Int. Ed. 2006, 45 (28) 4562-4588
46. Clegg, R. M. Curr. Opin. Biotechnol. 1995, 6 (1) 103-110
47. Clegg, R. M.; Murchie, A. I. H.; Zechel, A.; Lilley, D. M. J. Proc. Natl. Acad. Sci. U.S.A. 1993, 90 (7) 2994-2998
48. Dale, R. E.; Eisinger, J.; Blumberg, W. E. Biophys. J. 1979, 26 (2) 161-193
49. Stryer, L. Annu. Rev. Biochem. 1978, 47, 819-846
50. VanBeek, D. B.; Zwier, M. C.; Shorb, J. M.; Krueger, B. P. Biophys. J. 2007, 92 (12) 4168-4178
51. Sabanayagam, C. R.; Eid, J. S.; Meller, A. J. Chem. Phys. 2005, 122 (6) 061103-1-061103-5
52. Dinant, C.; Van Royen, M. E.; Vermeulen, W.; Houtsmuller, A. B. J. Microsc. 2008, 231 (1) 97-104
53. Widengren, J.; Schwillle, P. J. Phys. Chem. A 2000, 104 (27) 6416-6428
54. Leung, Y. F.; Cavalieri, D. Trends Genet. 2003, 19 (11) 649-659
55. Rao, A. N.; Vandencasteele, N.; Gamble, L. J.; Grainger, D. W. Anal. Chem. 2012, not supplied.
56. Beaucage, S. L.; Caruthers, M. H. Tetrahedron Lett. 1981, 22 (20) 1859-1862
57. Gong, P.; Grainger, D. W. Surf. Sci. 2004, 570 (1-2) 67-77
58. Sanborn, M. E.; Connolly, B. K.; Gurunathan, K.; Levitus, M. J. Phys. Chem. B 2007, 111 (37) 11064-11074
59. Didenko, V. V. Biotechniques 2001, 31 (5) 1106-1121
60. Gregory Cox, W.; Beaudet, M. P.; Agnew, J. Y.; Ruth, J. L. Anal. Biochem. 2004, 331 (2) 243-254
61. Toegl, A.; Kirchner, R.; Gauer, C.; Wixforth, A. J. Biomol. Tech. 2003, 14 (3) 197-204
62. Carletti, E.; Guerra, E.; Alberti, S. Trends Biotechnol. 2006, 24 (10) 443-448
63. Erickson, D.; Liu, X.; Krull, U.; Li, D. Anal. Chem. 2004, 76 (24) 7269-7277
64. Stillman, B. A.; Tonkinson, J. L. Anal. Biochem. 2001, 295 (2) 149-157
65. Gadgil, C.; Yeckel, A.; Derby, J. J.; Hu, W. S. J. Biotechnol. 2004, 114 (1-2) 31-45
66. Bishop, J.; Blair, S.; Chagovetz, A. M. Biophys. J. 2006, 90 (3) 831-840
67. Piston, D. W.; Kremers, G. J. Trends Biochem. Sci. 2007, 32 (9) 407-414
68. Dugas, V.; Broutin, J.; Souteyrand, E. Langmuir 2005, 21 (20) 9130-9136
69. Ha, T. Methods 2001, 25 (1) 78-86
70. Murphy, M. C.; Rasnik, I.; Cheng, W.; Lohman, T. M.; Ha, T. Biophys. J. 2004, 86 (4) 2530-2537
71. Selvin, P. R. Nat. Struct. Biol. 2000, 7 (9) 730-734
72. Bilban, M.; Buehler, L. K.; Head, S.; Desoye, G.; Quaranta, V. Curr. Issues Mol. Biol. 2002, 4 (2) 57-64
73. Aramendía, P. F.; Martín Negri, R.; San Román, E. J. Phys. Chem. 1994, 98 (12) 3165-3173