Normalizing DNA microarray data

Current Issues in Molecular Biology

Volumn 4, Issue 2, 2002, Pages 57-64

  Bilban, Martin ^a   Buehler, Lukas K ^a   Head, Steven ^a   Desoye, Gernot ^a   Quaranta, Vito ^a  

^a SCRIPPS RESEARCH INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; FLUORESCENT DYE;

ARTICLE; CHEMICAL LABELING; CONTROLLED STUDY; DNA HYBRIDIZATION; DNA MICROARRAY; FLUORESCENCE ANALYSIS; GENE EXPRESSION PROFILING; GENETIC TRANSCRIPTION; HOMEOSTASIS; IMAGE ANALYSIS; INFORMATION PROCESSING;

ANIMALS; CARBOCYANINES; DNA, COMPLEMENTARY; FLUORESCENT DYES; HUMANS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS;

EID: 0036202577     PISSN: 14673037     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (48)

1. Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling
2. Development of a toxicological gene array and quantitative assessment of this technology
3. DNA microarrays: A novel approach to investigate genomics in trophoblast invasion-a review
4. Molecular classification of cutaneous malignant melanoma by gene expression profiling
5. Microarray expression profiling identifies genes with altered expression in HDL-deficient mice
6. Binding of factor VIIa to tissue factor on keratinocytes induces gene expression
7. DNA microarrays of the complex human cytomegalovirus genome: Profiling kinetic class with drug sensitivity of viral gene expression
8. Making and reading microarrays
9. Computational methods for the identification of differential and coordinated gene expression
10. Gene expression microarray data analysis for toxicology profiling
11. Exploring the metabolic and genetic control of gene expression on a genomic scale
12. Delineation of prognostic biomarkers in prostate cancer
13. Expression profiling using cDNA microarrays
14. Normalization of array hybridization experiments in differential gene expression analysis
15. DNA arrays for analysis of gene expression
16. Discovery and analysis of inflammatory disease-related genes using cDNA microarrays
17. Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer
18. The transcriptional program in the response of human fibroblasts to serum
19. Statistical design and the analysis of gene expression microarray data
20. Analysis of variance for gene expression microarray data
21. Statistical analysis of a gene expression microarray experiment with replication
22. Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridizations
23. Expression monitoring using cDNA microarrays. A general protocol
24. Gene expression profiles of laser-captured adjacent neuronal subtypes
25. Drug target validation and identification of secondary drug target effects using DNA microarrays
26. A new approach for filtering noise from high-density oligonucleotide microarray datasets
27. Molecular portraits of human breast tumours
28. Signaling and circuitry of multiple MAPK pathways revealed by a matrix of global gene expression profiles
29. Systematic variation in gene expression patterns in human cancer cell lines
30. Quantitative monitoring of gene expression patterns with a complementary DNA microarray
31. Parallel human genome analysis: Microarray-based expression monitoring of 1000 genes
32. Normalization strategies for cDNA microarrays
33. Cooperative interactions of laminin 5 gamma2 chain, matrix metalloproteinase-2, and membrane type-1-matrix/metalloproteinase are required for mimicry of embryonic vasculogenesis by aggressive melanoma
34. Microarray techniques in pathology: Tool or toy?
35. Global analysis of herpes simplex virus type 1 transcription using an oligonucleotide-based DNA microarray
36. Genome-wide expression profiling of midgestation placenta and embryo using a 15, 000 mouse developmental cDNA microarray
37. Quantitative assessment of DNA microarrays-comparison with Northern blot analyses
38. Issues in cDNA microarray analysis: Quality filtering, channel normalization, models of variations and assessment of gene effects
39. The application of DNA microarrays in gene expression analysis
40. Analysis of gene expression identifies candidate markers and pharmacological targets in prostate cancer
41. ECM and cell surface proteolysis: Regulating cellular ecology
42. Gonadotropin releasing hormone receptor-coupled gene gene network organization
43. Normalization for cDNA microarray data
44. A statistical method for flagging weak spots improves normalization and ratio estimates in microarrays
45. Biomedical discovery with DNA arrays
46. Identification of genes responsive to BPDE treatment in HeLa cells using cDNA expression assays
47. An evaluation of the performance of cDNA microarrays for detecting changes in global mRNA expression