A model for structure and thermodynamics of ssDNA and dsDNA near a surface: A coarse grained approach

Computer Physics Communications

Volumn 181, Issue 12, 2010, Pages 2001-2007

  Ambia Garrido, J ^a   Vainrub, Arnold ^b   Pettitt, B Montgomery ^a  

^a UNIVERSITY OF HOUSTON   (United States)

^b AUBURN UNIVERSITY   (United States)

Author keywords

Continuum solvent model; DNA structure; Poisson Boltzmann

Indexed keywords

ALL-ATOM SIMULATIONS; APPLIED POTENTIALS; BASE PAIRS; COARSE GRAINED MODELS; COARSE-GRAINED; CONTINUUM SOLVENTS; DENSE SYSTEMS; DIELECTRIC BOUNDARY; DNA STRUCTURE; DOUBLE STRANDED DNA; END-TO-END DISTANCES; GAIN INSIGHT; MONTE CARLO SIMULATION; NEAR-SURFACE; PARAMETERIZED; POISSON-BOLTZMANN; POLYMER THEORY; SECONDARY STRUCTURES; SINGLE DNA MOLECULES; SURFACE FIELD; WORM-LIKE CHAIN MODELS;

DNA; MONTE CARLO METHODS; SPHERES; THERMODYNAMICS;

COMPUTER SIMULATION;

EID: 77957903935     PISSN: 00104655     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cpc.2010.08.029     Document Type: Article

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