-
1
-
-
69249115197
-
Membrane protein structure determination using cryo- electron tomography and 3D image averaging
-
Bartesaghi A., Subramaniam S. Membrane protein structure determination using cryo- electron tomography and 3D image averaging. Curr. Opin. Struct. Biol. 2009, 19:402-407.
-
(2009)
Curr. Opin. Struct. Biol.
, vol.19
, pp. 402-407
-
-
Bartesaghi, A.1
Subramaniam, S.2
-
2
-
-
78650450552
-
Structure of the 26S proteasome form Schizosaccharomyces pombe at subnanometer resolution
-
Bohn S., Beck F., Sakata E., Walzthoeni T., Beck M., et al. Structure of the 26S proteasome form Schizosaccharomyces pombe at subnanometer resolution. Proc. Natl. Acad. Sci. USA 2010, 107:20992-20997.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 20992-20997
-
-
Bohn, S.1
Beck, F.2
Sakata, E.3
Walzthoeni, T.4
Beck, M.5
-
3
-
-
16644365074
-
A 9å single particle reconstruction from CCD captured images on a 200kV electron cryomicroscope
-
Booth C.R., Jiang W., Baker M.L., Zhou Z.H., Ludtke S.J., et al. A 9å single particle reconstruction from CCD captured images on a 200kV electron cryomicroscope. J. Struct. Biol. 2004, 147:116-127.
-
(2004)
J. Struct. Biol.
, vol.147
, pp. 116-127
-
-
Booth, C.R.1
Jiang, W.2
Baker, M.L.3
Zhou, Z.H.4
Ludtke, S.J.5
-
4
-
-
58249090246
-
The native 3D organization of bacterial polysomes
-
Brandt F., Etchells S.A., Ortiz J.O., Elcock A.H., Hartl F.U., et al. The native 3D organization of bacterial polysomes. Cell 2010, 136:261-271.
-
(2010)
Cell
, vol.136
, pp. 261-271
-
-
Brandt, F.1
Etchells, S.A.2
Ortiz, J.O.3
Elcock, A.H.4
Hartl, F.U.5
-
5
-
-
0002944748
-
Imaging properties and applications of slow-scan charge-coupled device cameras suitable for elecgtron microscopy
-
DeRuijter W.J. Imaging properties and applications of slow-scan charge-coupled device cameras suitable for elecgtron microscopy. Micron 1995, 26:247-275.
-
(1995)
Micron
, vol.26
, pp. 247-275
-
-
DeRuijter, W.J.1
-
6
-
-
77953743759
-
Structure and function of mitochondrial supercomplexes
-
Dudkina N.V., Kouril R., Peters K., Braun H.-P., Boekema E.J. Structure and function of mitochondrial supercomplexes. Biochim. Biophys. Acta 2010, 1797:664-670.
-
(2010)
Biochim. Biophys. Acta
, vol.1797
, pp. 664-670
-
-
Dudkina, N.V.1
Kouril, R.2
Peters, K.3
Braun, H.-P.4
Boekema, E.J.5
-
7
-
-
0037020168
-
A tetrameric porin limits the cell wall permeability of Mycobacterium smegmatis
-
Engelhardt H., Heinz C., Niederweis M. A tetrameric porin limits the cell wall permeability of Mycobacterium smegmatis. J. Biol. Chem. 2002, 277:37567-37572.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 37567-37572
-
-
Engelhardt, H.1
Heinz, C.2
Niederweis, M.3
-
8
-
-
1242352009
-
The structure of a mycobacterial outer- membrane channel
-
Faller M., Niederweis M., Schulz G.E. The structure of a mycobacterial outer- membrane channel. Science 2004, 303:1089-1092.
-
(2004)
Science
, vol.303
, pp. 1089-1092
-
-
Faller, M.1
Niederweis, M.2
Schulz, G.E.3
-
9
-
-
0343052627
-
A spectral estimation approach to contrast transfer function detection in electron microscopy
-
Fernández J.J., Sanjurjo J.R., Carazo J.M. A spectral estimation approach to contrast transfer function detection in electron microscopy. Ultramicroscopy 1997, 68:267-295.
-
(1997)
Ultramicroscopy
, vol.68
, pp. 267-295
-
-
Fernández, J.J.1
Sanjurjo, J.R.2
Carazo, J.M.3
-
10
-
-
33646784015
-
CTF determination and correction in electron cryotomography
-
Fernández J.J., Li S., Crowther R.A. CTF determination and correction in electron cryotomography. Ultramicroscopy 2006, 106:587-596.
-
(2006)
Ultramicroscopy
, vol.106
, pp. 587-596
-
-
Fernández, J.J.1
Li, S.2
Crowther, R.A.3
-
11
-
-
16344390563
-
Retrovirus envelope protein complex structure in situ studied by cryo-electron tomography
-
Förster F., Medalia O., Zauberman N., Baumeister W., Fass D. Retrovirus envelope protein complex structure in situ studied by cryo-electron tomography. Proc. Natl. Acad. Sci. USA 2005, 102:4729-4734.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 4729-4734
-
-
Förster, F.1
Medalia, O.2
Zauberman, N.3
Baumeister, W.4
Fass, D.5
-
13
-
-
85027919032
-
Cryo-EM structure of the ribosome-SecYE complex in the membrane environment
-
Frauenfeld J., Gumbart J., van der Sluis E.O., Funes S., Gartmann M., et al. Cryo-EM structure of the ribosome-SecYE complex in the membrane environment. Nat. Struct. Mol. Biol. 2011, 18:614-621.
-
(2011)
Nat. Struct. Mol. Biol.
, vol.18
, pp. 614-621
-
-
Frauenfeld, J.1
Gumbart, J.2
van der Sluis, E.O.3
Funes, S.4
Gartmann, M.5
-
14
-
-
33845348200
-
FREALIGN: high-resolution refinement of single particle structures
-
Grigorieff N. FREALIGN: high-resolution refinement of single particle structures. J. Struct. Biol. 2007, 157:117-125.
-
(2007)
J. Struct. Biol.
, vol.157
, pp. 117-125
-
-
Grigorieff, N.1
-
15
-
-
84868477196
-
-
Multireference alignment of 3D data from electron tomography, Thesis, Technical University, Munich.
-
Haller, T., 2008. Multireference alignment of 3D data from electron tomography, Thesis, Technical University, Munich.
-
(2008)
-
-
Haller, T.1
-
16
-
-
0034307651
-
Selective extraction and purification of a mycobacterial outer membrane protein
-
Heinz C., Niederweis M. Selective extraction and purification of a mycobacterial outer membrane protein. Anal. Biochem. 2000, 285:113-120.
-
(2000)
Anal. Biochem.
, vol.285
, pp. 113-120
-
-
Heinz, C.1
Niederweis, M.2
-
17
-
-
41649116701
-
Disclosure of the mycobacterial outer membrane: cryo-electron tomography and vitreous sections reveal the lipid bilayer structure
-
Hoffmann C., Leis A., Niederweis M., Plitzko J., Engelhardt H. Disclosure of the mycobacterial outer membrane: cryo-electron tomography and vitreous sections reveal the lipid bilayer structure. Proc. Natl. Acad. Sci. USA 2008, 105:3963-3967.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 3963-3967
-
-
Hoffmann, C.1
Leis, A.2
Niederweis, M.3
Plitzko, J.4
Engelhardt, H.5
-
18
-
-
0034738622
-
Order-disorder transition in bilayers of diphytanoyl phosphatidylcholine
-
Hung W.C., Chen F.Y., Huang H.W. Order-disorder transition in bilayers of diphytanoyl phosphatidylcholine. Biochim. Biophys. Acta 2000, 1467:198-206.
-
(2000)
Biochim. Biophys. Acta
, vol.1467
, pp. 198-206
-
-
Hung, W.C.1
Chen, F.Y.2
Huang, H.W.3
-
19
-
-
55949115430
-
Role of HAMP domains in chemtaxis signaling by bacterial chemoreceptors
-
Khursigara C.M., Wu X., Zhang P., Lefman J., Subramaniam S. Role of HAMP domains in chemtaxis signaling by bacterial chemoreceptors. Proc. Natl. Acad. Sci. USA 2008, 105:16555-16560.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 16555-16560
-
-
Khursigara, C.M.1
Wu, X.2
Zhang, P.3
Lefman, J.4
Subramaniam, S.5
-
21
-
-
0002439918
-
-
Least-squares method of alignment using markers. In: Frank., J. (Ed.), Electron Tomography. Three-Dimensional Imaging With the Transmission Electron Microscope, Plenum Press
-
Lawrence, M.C., 1992. Least-squares method of alignment using markers. In: Frank., J. (Ed.), Electron Tomography. Three-Dimensional Imaging With the Transmission Electron Microscope, Plenum Press, 197-204.
-
(1992)
, pp. 197-204
-
-
Lawrence, M.C.1
-
22
-
-
51349162563
-
Molecular architecture of native HIV-1 gp120 trimers
-
Liu J., Bartesaghi A., Borgnia M.J., Sapiro G., Subramaniam S. Molecular architecture of native HIV-1 gp120 trimers. Nature 2008, 455:109-113.
-
(2008)
Nature
, vol.455
, pp. 109-113
-
-
Liu, J.1
Bartesaghi, A.2
Borgnia, M.J.3
Sapiro, G.4
Subramaniam, S.5
-
23
-
-
4143115811
-
Structure and mechanism of ABC transporters
-
Locher K.P. Structure and mechanism of ABC transporters. Curr. Opin. Struct. Biol. 2004, 14:426-431.
-
(2004)
Curr. Opin. Struct. Biol.
, vol.14
, pp. 426-431
-
-
Locher, K.P.1
-
24
-
-
14844330221
-
Structural studies by electron tomography: from cells to molecules
-
Lucic V., Förster F., Baumeister W. Structural studies by electron tomography: from cells to molecules. Annu. Rev. Biochem. 2005, 74:833-865.
-
(2005)
Annu. Rev. Biochem.
, vol.74
, pp. 833-865
-
-
Lucic, V.1
Förster, F.2
Baumeister, W.3
-
25
-
-
33646845510
-
Topology of the porin MspA in the outer membrane of Mycobacterium smegmatis
-
Mahfoud M., Sukumaran S., Hülsmann P., Grieger K., Niederweis M. Topology of the porin MspA in the outer membrane of Mycobacterium smegmatis. J. Biol. Chem. 2006, 281:5908-5915.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 5908-5915
-
-
Mahfoud, M.1
Sukumaran, S.2
Hülsmann, P.3
Grieger, K.4
Niederweis, M.5
-
26
-
-
79954419677
-
Simulation and correction of electron images of tilted planar weak-phase samples
-
Mariani V., Schenk A.D., Philippsen A., Engel A. Simulation and correction of electron images of tilted planar weak-phase samples. J. Struct. Biol. 2011, 174:259-268.
-
(2011)
J. Struct. Biol.
, vol.174
, pp. 259-268
-
-
Mariani, V.1
Schenk, A.D.2
Philippsen, A.3
Engel, A.4
-
27
-
-
25644458666
-
Automated electron microscope tomography using robust prediction of specimen movements
-
Mastronarde D.N. Automated electron microscope tomography using robust prediction of specimen movements. J. Struct. Biol. 2005, 152:36-51.
-
(2005)
J. Struct. Biol.
, vol.152
, pp. 36-51
-
-
Mastronarde, D.N.1
-
28
-
-
33745041479
-
Roles of bilayer material properties in function and distribution of membrane proteins
-
McIntosh T.J., Simon S.A. Roles of bilayer material properties in function and distribution of membrane proteins. Annu. Rev. Biophys. Biomol. Struct. 2006, 35:177-198.
-
(2006)
Annu. Rev. Biophys. Biomol. Struct.
, vol.35
, pp. 177-198
-
-
McIntosh, T.J.1
Simon, S.A.2
-
29
-
-
61349159270
-
Protein oligomerization in the bacterial outer membrane
-
Meng G., Fronzes R., Chandran V., Remaut H., Waksman G. Protein oligomerization in the bacterial outer membrane. Mol. Membr. Biol. 2009, 26:136-145.
-
(2009)
Mol. Membr. Biol.
, vol.26
, pp. 136-145
-
-
Meng, G.1
Fronzes, R.2
Chandran, V.3
Remaut, H.4
Waksman, G.5
-
30
-
-
0038441501
-
Accurate determination of local defocus and specimen tilt in electron microscopy
-
Mindell J.A., Grigorieff N. Accurate determination of local defocus and specimen tilt in electron microscopy. J. Struct. Biol. 2003, 142:334-347.
-
(2003)
J. Struct. Biol.
, vol.142
, pp. 334-347
-
-
Mindell, J.A.1
Grigorieff, N.2
-
31
-
-
0022456244
-
Improved stability of black lipid membranes by coating with polysaccharide derivatives bearing hydrophobic anchor groups
-
Moellerfeld J., Prass W., Ringsdorf H., Hamazaki H., Sunamoto J. Improved stability of black lipid membranes by coating with polysaccharide derivatives bearing hydrophobic anchor groups. Biochim. Biophys. Acta 1986, 857:265-270.
-
(1986)
Biochim. Biophys. Acta
, vol.857
, pp. 265-270
-
-
Moellerfeld, J.1
Prass, W.2
Ringsdorf, H.3
Hamazaki, H.4
Sunamoto, J.5
-
32
-
-
13844264476
-
TOM software toolbox: acquisition and analysis for electron tomography
-
Nickell S., Förster F., Linaroudis A., Del Net W., Beck F., et al. TOM software toolbox: acquisition and analysis for electron tomography. J. Struct. Biol. 2005, 149:227-234.
-
(2005)
J. Struct. Biol.
, vol.149
, pp. 227-234
-
-
Nickell, S.1
Förster, F.2
Linaroudis, A.3
Del Net, W.4
Beck, F.5
-
33
-
-
67749095289
-
Insight into the molecular architecture of the 26S proteasome
-
Nickell S., Beck F., Scheres S.H.W., Korinek A., Förster F., et al. Insight into the molecular architecture of the 26S proteasome. Proc. Natl. Acad. Sci. USA 2009, 106:11943-11947.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 11943-11947
-
-
Nickell, S.1
Beck, F.2
Scheres, S.H.W.3
Korinek, A.4
Förster, F.5
-
34
-
-
77649105362
-
Mycobacterial outer membranes: in search of proteins
-
Niederweis M., Danilchanka O., Huff J., Hoffmann C., Engelhardt H. Mycobacterial outer membranes: in search of proteins. Trends Microbiol. 2010, 18:109-116.
-
(2010)
Trends Microbiol.
, vol.18
, pp. 109-116
-
-
Niederweis, M.1
Danilchanka, O.2
Huff, J.3
Hoffmann, C.4
Engelhardt, H.5
-
35
-
-
77955884056
-
Structure of hibernating ribosomes studied by cryoelectron tomography in vitro and in situ
-
Ortiz J.O., Brandt F., Matias V.R., Sennels L., Rappsilber J., et al. Structure of hibernating ribosomes studied by cryoelectron tomography in vitro and in situ. J. Cell Biol. 2010, 190:613-621.
-
(2010)
J. Cell Biol.
, vol.190
, pp. 613-621
-
-
Ortiz, J.O.1
Brandt, F.2
Matias, V.R.3
Sennels, L.4
Rappsilber, J.5
-
36
-
-
4444221565
-
UCSF Chimera - a visualization system for exploratory research and analysis
-
Petterson E.F., Goddard T.D., Huang C.C., Couch G.S., Greenblatt D.M., et al. UCSF Chimera - a visualization system for exploratory research and analysis. J. Comput. Chem. 2004, 13:1605-1612.
-
(2004)
J. Comput. Chem.
, vol.13
, pp. 1605-1612
-
-
Petterson, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
-
37
-
-
33845639652
-
The contrast imaging function for tilted specimens
-
Philippsen A., Engel H.A., Engel A. The contrast imaging function for tilted specimens. Ultramicroscopy 2007, 107:202-212.
-
(2007)
Ultramicroscopy
, vol.107
, pp. 202-212
-
-
Philippsen, A.1
Engel, H.A.2
Engel, A.3
-
38
-
-
77955609366
-
Micromachining tools and correlative approaches for cellular cryo-electron tomography
-
Rigort A., Bäuerlein F.J.B., Leis A., Gruska M., Hoffmann C., et al. Micromachining tools and correlative approaches for cellular cryo-electron tomography. J. Struct. Biol. 2010, 172:169-179.
-
(2010)
J. Struct. Biol.
, vol.172
, pp. 169-179
-
-
Rigort, A.1
Bäuerlein, F.J.B.2
Leis, A.3
Gruska, M.4
Hoffmann, C.5
-
39
-
-
84858629640
-
Focused ion beam micromachining of eukaryotic cells for cryo-electron tomography
-
Rigort A., Bäuerlein F.J.B., Villa E., Eibauer M., Laugks T., et al. Focused ion beam micromachining of eukaryotic cells for cryo-electron tomography. Proc. Natl. Acad. Sci. USA 2012, 109:4449-4454.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 4449-4454
-
-
Rigort, A.1
Bäuerlein, F.J.B.2
Villa, E.3
Eibauer, M.4
Laugks, T.5
-
40
-
-
0142042865
-
Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy
-
Rosenthal P.B., Henderson R. Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy. J. Mol. Biol. 2003, 333:721-745.
-
(2003)
J. Mol. Biol.
, vol.333
, pp. 721-745
-
-
Rosenthal, P.B.1
Henderson, R.2
-
41
-
-
0019987933
-
The correlation averaging of a regularly arranged bacterial cell envelope protein
-
Saxton W.O., Baumeister W. The correlation averaging of a regularly arranged bacterial cell envelope protein. J. Microsc. 1982, 127:127-138.
-
(1982)
J. Microsc.
, vol.127
, pp. 127-138
-
-
Saxton, W.O.1
Baumeister, W.2
-
42
-
-
0035028415
-
MspA provides the main hydrophilic pathway through the cell wall of Mycobacterium smegmatis
-
Stahl C., Kubetzdo S., Kaps I., Seeber S., Engelhardt H., et al. MspA provides the main hydrophilic pathway through the cell wall of Mycobacterium smegmatis. Mol. Microbiol. 2001, 40:451-464.
-
(2001)
Mol. Microbiol.
, vol.40
, pp. 451-464
-
-
Stahl, C.1
Kubetzdo, S.2
Kaps, I.3
Seeber, S.4
Engelhardt, H.5
-
43
-
-
9244240974
-
Consecutive gene deletions in Mycobacterium smegmatis using the yeast FLP recombinase
-
Stephan J., Stemmer V., Niederweis M. Consecutive gene deletions in Mycobacterium smegmatis using the yeast FLP recombinase. Gene 2004, 343:181-190.
-
(2004)
Gene
, vol.343
, pp. 181-190
-
-
Stephan, J.1
Stemmer, V.2
Niederweis, M.3
-
44
-
-
78649908437
-
Maximum likelihood based classification of electron tomographic data
-
Stölken M., Beck F., Haller T., Hegerl R., Gutsche I., et al. Maximum likelihood based classification of electron tomographic data. J. Struct. Biol. 2011, 173:77-85.
-
(2011)
J. Struct. Biol.
, vol.173
, pp. 77-85
-
-
Stölken, M.1
Beck, F.2
Haller, T.3
Hegerl, R.4
Gutsche, I.5
-
45
-
-
77955658266
-
Structure of reconstituted bacterial membrane efflux pump by cryo-electron tomography
-
Trépout S., Taveau J.C., Benabdelhak H., Granier T., Ducruix A., et al. Structure of reconstituted bacterial membrane efflux pump by cryo-electron tomography. Biochim. Biophys. Acta 2010, 1798:1953-1960.
-
(2010)
Biochim. Biophys. Acta
, vol.1798
, pp. 1953-1960
-
-
Trépout, S.1
Taveau, J.C.2
Benabdelhak, H.3
Granier, T.4
Ducruix, A.5
-
46
-
-
25144494651
-
Fourier shell correlation threshold criteria
-
Van Heel M., Schatz M. Fourier shell correlation threshold criteria. J. Struct. Biol. 2005, 151:250-262.
-
(2005)
J. Struct. Biol.
, vol.151
, pp. 250-262
-
-
Van Heel, M.1
Schatz, M.2
-
47
-
-
20244379996
-
Single-particle electron cryo-microscopy: towards atomic resolution
-
Van Heel M., Gowen B., Matadeen R., Orlova E.V., Finn R., et al. Single-particle electron cryo-microscopy: towards atomic resolution. Q. Rev. Biophys. 2000, 33:307-369.
-
(2000)
Q. Rev. Biophys.
, vol.33
, pp. 307-369
-
-
Van Heel, M.1
Gowen, B.2
Matadeen, R.3
Orlova, E.V.4
Finn, R.5
-
48
-
-
79960010288
-
A fast algorithm for computing and correcting the CTF for tilted, thick specimens in TEM
-
Voortman L.M., Stallinga S., Schoenmakers R.H.M., van Vliet L.J., Rieger B. A fast algorithm for computing and correcting the CTF for tilted, thick specimens in TEM. Ultramicroscopy 2011, 111:1029-1036.
-
(2011)
Ultramicroscopy
, vol.111
, pp. 1029-1036
-
-
Voortman, L.M.1
Stallinga, S.2
Schoenmakers, R.H.M.3
van Vliet, L.J.4
Rieger, B.5
-
49
-
-
70249124205
-
Structure of the BK potassium channel in a lipid membrane from electron cryomicroscopy
-
Wang L., Sigworth F.J. Structure of the BK potassium channel in a lipid membrane from electron cryomicroscopy. Nature 2009, 461:292-295.
-
(2009)
Nature
, vol.461
, pp. 292-295
-
-
Wang, L.1
Sigworth, F.J.2
-
50
-
-
0042167432
-
Focus gradient correction applied to tilt series image data used in electron tomography
-
Winkler H., Taylor K.A. Focus gradient correction applied to tilt series image data used in electron tomography. J. Struct. Biol. 2003, 143:24-32.
-
(2003)
J. Struct. Biol.
, vol.143
, pp. 24-32
-
-
Winkler, H.1
Taylor, K.A.2
-
51
-
-
70350217328
-
CTF determination and correction for low dose tomographic tilt series
-
Xiong Q., Morphew M.K., Schwartz C.L., Hoenger A.H., Mastronarde D.N. CTF determination and correction for low dose tomographic tilt series. J. Struct. Biol. 2009, 168:378-387.
-
(2009)
J. Struct. Biol.
, vol.168
, pp. 378-387
-
-
Xiong, Q.1
Morphew, M.K.2
Schwartz, C.L.3
Hoenger, A.H.4
Mastronarde, D.N.5
-
52
-
-
33748038359
-
Cryo-electron tomographic structure of an immunodeficiency virus envelope complex in situ
-
Zanetti G., Briggs J.A.G., Grünewald K., Sattentau Q.J., Fuller S.D. Cryo-electron tomographic structure of an immunodeficiency virus envelope complex in situ. Plos Pathog. 2006, 2:790-797.
-
(2006)
Plos Pathog.
, vol.2
, pp. 790-797
-
-
Zanetti, G.1
Briggs, J.A.G.2
Grünewald, K.3
Sattentau, Q.J.4
Fuller, S.D.5
-
53
-
-
70349467745
-
Contrast transfer function correction applied to cryo-electron tomography and sub-tomogram averaging
-
Zanetti G., Riches J.D., Fuller S., Briggs J.A.G. Contrast transfer function correction applied to cryo-electron tomography and sub-tomogram averaging. J. Struct. Biol. 2009, 168:305-312.
-
(2009)
J. Struct. Biol.
, vol.168
, pp. 305-312
-
-
Zanetti, G.1
Riches, J.D.2
Fuller, S.3
Briggs, J.A.G.4
|