-
1
-
-
79957473097
-
Interference of ribosomal frameshifting by antisense peptide nucleic acids suppresses SARS coronavirus replication
-
Ahn DG, Lee W, Choi JK, Kim SJ, Plant EP, Almazan F, Taylor DR, Enjuanes L, Oh JW (2011) Interference of ribosomal frameshifting by antisense peptide nucleic acids suppresses SARS coronavirus replication. Antiviral Res 91: 1-10.
-
(2011)
Antiviral Res
, vol.91
, pp. 1-10
-
-
Ahn, D.G.1
Lee, W.2
Choi, J.K.3
Kim, S.J.4
Plant, E.P.5
Almazan, F.6
Taylor, D.R.7
Enjuanes, L.8
Oh, J.W.9
-
2
-
-
34547806062
-
De novo initiation of RNA synthesis by the arterivirus RNA-dependent RNA polymerase
-
Beerens N, Selisko B, Ricagno S, Imbert I, van der Zanden L, Snijder EJ, Canard B (2007) De novo initiation of RNA synthesis by the arterivirus RNA-dependent RNA polymerase. J Virol 81: 8384-8395.
-
(2007)
J Virol
, vol.81
, pp. 8384-8395
-
-
Beerens, N.1
Selisko, B.2
Ricagno, S.3
Imbert, I.4
van der Zanden, L.5
Snijder, E.J.6
Canard, B.7
-
3
-
-
0028233381
-
RNA template-directed RNA synthesis by T7 RNA polymerase
-
Cazenave C, Uhlenbeck OC (1994) RNA template-directed RNA synthesis by T7 RNA polymerase. Proc Natl Acad Sci USA 91: 6972-6976.
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 6972-6976
-
-
Cazenave, C.1
Uhlenbeck, O.C.2
-
4
-
-
17444431570
-
Expression, purification, and characterization of SARS coronavirus RNA polymerase
-
Cheng A, Zhang W, Xie Y, Jiang W, Arnold E, Sarafianos SG, Ding J (2005) Expression, purification, and characterization of SARS coronavirus RNA polymerase. Virology 335: 165-176.
-
(2005)
Virology
, vol.335
, pp. 165-176
-
-
Cheng, A.1
Zhang, W.2
Xie, Y.3
Jiang, W.4
Arnold, E.5
Sarafianos, S.G.6
Ding, J.7
-
5
-
-
79954506008
-
De novo polymerase activity and oligomerization of hepatitis C virus RNA-dependent RNA-polymerases from genotypes 1 to 5
-
Clemente-Casares P, Lopez-Jimenez AJ, Bellon-Echeverria I, Encinar JA, Martinez-Alfaro E, Perez-Flores R, Mas A (2011) De novo polymerase activity and oligomerization of hepatitis C virus RNA-dependent RNA-polymerases from genotypes 1 to 5. PLoS One 6: e18515.
-
(2011)
PLoS One
, vol.6
-
-
Clemente-Casares, P.1
Lopez-Jimenez, A.J.2
Bellon-Echeverria, I.3
Encinar, J.A.4
Martinez-Alfaro, E.5
Perez-Flores, R.6
Mas, A.7
-
6
-
-
0037314114
-
RnaViz 2: an improved representation of RNA secondary structure
-
De Rijk P, Wuyts J, De Wachter R (2003) RnaViz 2: an improved representation of RNA secondary structure. Bioinformatics 19: 299-300.
-
(2003)
Bioinformatics
, vol.19
, pp. 299-300
-
-
De Rijk, P.1
Wuyts, J.2
De Wachter, R.3
-
7
-
-
3142673612
-
The 3' cis-acting genomic replication element of the severe acute respiratory syndrome coronavirus can function in the murine coronavirus genome
-
Goebel SJ, Taylor J, Masters PS (2004) The 3' cis-acting genomic replication element of the severe acute respiratory syndrome coronavirus can function in the murine coronavirus genome. J Virol 78: 7846-7851.
-
(2004)
J Virol
, vol.78
, pp. 7846-7851
-
-
Goebel, S.J.1
Taylor, J.2
Masters, P.S.3
-
8
-
-
0035919073
-
A novel mechanism to ensure terminal initiation by hepatitis C virus NS5B polymerase
-
Hong Z, Cameron CE, Walker MP, Castro C, Yao N, Lau JY, Zhong W (2001) A novel mechanism to ensure terminal initiation by hepatitis C virus NS5B polymerase. Virology 285: 6-11.
-
(2001)
Virology
, vol.285
, pp. 6-11
-
-
Hong, Z.1
Cameron, C.E.2
Walker, M.P.3
Castro, C.4
Yao, N.5
Lau, J.Y.6
Zhong, W.7
-
10
-
-
33750218147
-
A second, non-canonical RNA-dependent RNA polymerase in SARS coronavirus
-
Imbert I, Guillemot JC, Bourhis JM, Bussetta C, Coutard B, Egloff MP, Ferron F, Gorbalenya AE, Canard B (2006) A second, non-canonical RNA-dependent RNA polymerase in SARS coronavirus. EMBO J 25: 4933-4942.
-
(2006)
EMBO J
, vol.25
, pp. 4933-4942
-
-
Imbert, I.1
Guillemot, J.C.2
Bourhis, J.M.3
Bussetta, C.4
Coutard, B.5
Egloff, M.P.6
Ferron, F.7
Gorbalenya, A.E.8
Canard, B.9
-
11
-
-
0027375727
-
Structural analysis by energy dot plot of a large mRNA
-
Jacobson AB, Zuker M (1993) Structural analysis by energy dot plot of a large mRNA. J Mol Biol 233: 261-269.
-
(1993)
J Mol Biol
, vol.233
, pp. 261-269
-
-
Jacobson, A.B.1
Zuker, M.2
-
12
-
-
0035450225
-
De novo initiation of viral RNA-dependent RNA synthesis
-
Kao CC, Singh P, Ecker DJ (2001) De novo initiation of viral RNA-dependent RNA synthesis. Virology 287: 251-260.
-
(2001)
Virology
, vol.287
, pp. 251-260
-
-
Kao, C.C.1
Singh, P.2
Ecker, D.J.3
-
13
-
-
34547655484
-
Biochemical characterization of a recombinant Japanese encephalitis virus RNA-dependent RNA polymerase
-
Kim YG, Yoo JS, Kim JH, Kim CM, Oh JW (2007) Biochemical characterization of a recombinant Japanese encephalitis virus RNA-dependent RNA polymerase. BMC Mol Biol 8: 59.
-
(2007)
BMC Mol Biol
, vol.8
, pp. 59
-
-
Kim, Y.G.1
Yoo, J.S.2
Kim, J.H.3
Kim, C.M.4
Oh, J.W.5
-
14
-
-
54749157085
-
SARS-coronavirus replication is supported by a reticulovesicular network of modified endoplasmic reticulum
-
Knoops K, Kikkert M, Worm SH, Zevenhoven-Dobbe JC, van der Meer Y, Koster AJ, Mommaas AM, Snijder EJ (2008) SARS-coronavirus replication is supported by a reticulovesicular network of modified endoplasmic reticulum. PLoS Biol 6: e226.
-
(2008)
PLoS Biol
, vol.6
-
-
Knoops, K.1
Kikkert, M.2
Worm, S.H.3
Zevenhoven-Dobbe, J.C.4
van der Meer, Y.5
Koster, A.J.6
Mommaas, A.M.7
Snijder, E.J.8
-
15
-
-
18144363162
-
Replication and in vivo repair of the hepatitis A virus genome lacking the poly(A) tail
-
Kusov YY, Gosert R, Gauss-Muller V (2005) Replication and in vivo repair of the hepatitis A virus genome lacking the poly(A) tail. J Gen Virol 86: 1363-1368.
-
(2005)
J Gen Virol
, vol.86
, pp. 1363-1368
-
-
Kusov, Y.Y.1
Gosert, R.2
Gauss-Muller, V.3
-
16
-
-
0019366789
-
Stable hairpin structure within the 5'-terminal 85 nucleotides of poliovirus RNA
-
Larsen GR, Semler BL, Wimmer E (1981) Stable hairpin structure within the 5'-terminal 85 nucleotides of poliovirus RNA. J Virol 37: 328-335.
-
(1981)
J Virol
, vol.37
, pp. 328-335
-
-
Larsen, G.R.1
Semler, B.L.2
Wimmer, E.3
-
17
-
-
0033989278
-
De novo initiation of RNA synthesis by the RNA-dependent RNA polymerase (NS5B) of hepatitis C virus
-
Luo G, Hamatake RK, Mathis DM, Racela J, Rigat KL, Lemm J, Colonno RJ (2000) De novo initiation of RNA synthesis by the RNA-dependent RNA polymerase (NS5B) of hepatitis C virus. J Virol 74: 851-863.
-
(2000)
J Virol
, vol.74
, pp. 851-863
-
-
Luo, G.1
Hamatake, R.K.2
Mathis, D.M.3
Racela, J.4
Rigat, K.L.5
Lemm, J.6
Colonno, R.J.7
-
18
-
-
0038823524
-
The Genome sequence of the SARS-associated coronavirus
-
Marra MA, Jones SJ, Astell CR, Holt RA, Brooks-Wilson A, Butterfield YS, Khattra J, Asano JK, Barber SA, Chan SY, Cloutier A, Coughlin SM, Freeman D, Girn N, Griffith OL, Leach SR, Mayo M, McDonald H, Montgomery SB, Pandoh PK, Petrescu AS, Robertson AG, Schein JE, Siddiqui A, Smailus DE, Stott JM, Yang GS, Plummer F, Andonov A, Artsob H, Bastien N, Bernard K, Booth TF, Bowness D, Czub M, Drebot M, Fernando L, Flick R, Garbutt M, Gray M, Grolla A, Jones S, Feldmann H, Meyers A, Kabani A, Li Y, Normand S, Stroher U, Tipples GA, Tyler S, Vogrig R, Ward D, Watson B, Brunham RC, Krajden M, Petric M, Skowronski DM, Upton C, Roper RL (2003) The Genome sequence of the SARS-associated coronavirus. Science 300: 1399-1404.
-
(2003)
Science
, vol.300
, pp. 1399-1404
-
-
Marra, M.A.1
Jones, S.J.2
Astell, C.R.3
Holt, R.A.4
Brooks-Wilson, A.5
Butterfield, Y.S.6
Khattra, J.7
Asano, J.K.8
Barber, S.A.9
Chan, S.Y.10
Cloutier, A.11
Coughlin, S.M.12
Freeman, D.13
Girn, N.14
Griffith, O.L.15
Leach, S.R.16
Mayo, M.17
McDonald, H.18
Montgomery, S.B.19
Pandoh, P.K.20
Petrescu, A.S.21
Robertson, A.G.22
Schein, J.E.23
Siddiqui, A.24
Smailus, D.E.25
Stott, J.M.26
Yang, G.S.27
Plummer, F.28
Andonov, A.29
Artsob, H.30
Bastien, N.31
Bernard, K.32
Booth, T.F.33
Bowness, D.34
Czub, M.35
Drebot, M.36
Fernando, L.37
Flick, R.38
Garbutt, M.39
Gray, M.40
Grolla, A.41
Jones, S.42
Feldmann, H.43
Meyers, A.44
Kabani, A.45
Li, Y.46
Normand, S.47
Stroher, U.48
Tipples, G.A.49
Tyler, S.50
Vogrig, R.51
Ward, D.52
Watson, B.53
Brunham, R.C.54
Krajden, M.55
Petric, M.56
Skowronski, D.M.57
Upton, C.58
Roper, R.L.59
more..
-
19
-
-
33746317830
-
The molecular biology of coronaviruses
-
Masters PS (2006) The molecular biology of coronaviruses. Adv Virus Res 66: 193-292.
-
(2006)
Adv Virus Res
, vol.66
, pp. 193-292
-
-
Masters, P.S.1
-
20
-
-
0032582009
-
In vitro characterization of late steps of RNA recombination in turnip crinkle virus. I. Role of motif1-hairpin structure
-
Nagy PD, Simon AE (1998) In vitro characterization of late steps of RNA recombination in turnip crinkle virus. I. Role of motif1-hairpin structure. Virology 249: 379-392.
-
(1998)
Virology
, vol.249
, pp. 379-392
-
-
Nagy, P.D.1
Simon, A.E.2
-
21
-
-
0032816079
-
A recombinant hepatitis C virus RNA-dependent RNA polymerase capable of copying the full-length viral RNA
-
Oh JW, Ito T, Lai MM (1999) A recombinant hepatitis C virus RNA-dependent RNA polymerase capable of copying the full-length viral RNA. J Virol 73: 7694-7702.
-
(1999)
J Virol
, vol.73
, pp. 7694-7702
-
-
Oh, J.W.1
Ito, T.2
Lai, M.M.3
-
22
-
-
0033766003
-
Identification of an RNA hairpin in poliovirus RNA that serves as the primary template in the in vitro uridylylation of VPg
-
Paul AV, Rieder E, Kim DW, van Boom JH, Wimmer E (2000) Identification of an RNA hairpin in poliovirus RNA that serves as the primary template in the in vitro uridylylation of VPg. J Virol 74: 10359-10370.
-
(2000)
J Virol
, vol.74
, pp. 10359-10370
-
-
Paul, A.V.1
Rieder, E.2
Kim, D.W.3
van Boom, J.H.4
Wimmer, E.5
-
23
-
-
77950809174
-
Achieving a golden mean: mechanisms by which coronaviruses ensure synthesis of the correct stoichiometric ratios of viral proteins
-
Plant EP, Rakauskaite R, Taylor DR, Dinman JD (2010) Achieving a golden mean: mechanisms by which coronaviruses ensure synthesis of the correct stoichiometric ratios of viral proteins. J Virol 84: 4330-4340.
-
(2010)
J Virol
, vol.84
, pp. 4330-4340
-
-
Plant, E.P.1
Rakauskaite, R.2
Taylor, D.R.3
Dinman, J.D.4
-
24
-
-
0036893141
-
Mechanism of de novo initiation by the hepatitis C virus RNA-dependent RNA polymerase: role of divalent metals
-
Ranjith-Kumar CT, Kim YC, Gutshall L, Silverman C, Khandekar S, Sarisky RT, Kao CC (2002) Mechanism of de novo initiation by the hepatitis C virus RNA-dependent RNA polymerase: role of divalent metals. J Virol 76: 12513-12525.
-
(2002)
J Virol
, vol.76
, pp. 12513-12525
-
-
Ranjith-Kumar, C.T.1
Kim, Y.C.2
Gutshall, L.3
Silverman, C.4
Khandekar, S.5
Sarisky, R.T.6
Kao, C.C.7
-
25
-
-
0035166768
-
HCV RNA-dependent RNA polymerase replicates in vitro the 3' terminal region of the minus-strand viral RNA more efficiently than the 3' terminal region of the plus RNA
-
Reigadas S, Ventura M, Sarih-Cottin L, Castroviejo M, Litvak S, Astier-Gin T (2001) HCV RNA-dependent RNA polymerase replicates in vitro the 3' terminal region of the minus-strand viral RNA more efficiently than the 3' terminal region of the plus RNA. Eur J Biochem 268: 5857-5867.
-
(2001)
Eur J Biochem
, vol.268
, pp. 5857-5867
-
-
Reigadas, S.1
Ventura, M.2
Sarih-Cottin, L.3
Castroviejo, M.4
Litvak, S.5
Astier-Gin, T.6
-
26
-
-
33845750075
-
A contemporary view of coronavirus transcription
-
Sawicki SG, Sawicki DL, Siddell SG (2007) A contemporary view of coronavirus transcription. J Virol 81: 20-29.
-
(2007)
J Virol
, vol.81
, pp. 20-29
-
-
Sawicki, S.G.1
Sawicki, D.L.2
Siddell, S.G.3
-
27
-
-
33745962422
-
Comparative mechanistic studies of de novo RNA synthesis by flavivirus RNA-dependent RNA polymerases
-
Selisko B, Dutartre H, Guillemot JC, Debarnot C, Benarroch D, Khromykh A, Despres P, Egloff MP, Canard B (2006) Comparative mechanistic studies of de novo RNA synthesis by flavivirus RNA-dependent RNA polymerases. Virology 351: 145-158.
-
(2006)
Virology
, vol.351
, pp. 145-158
-
-
Selisko, B.1
Dutartre, H.2
Guillemot, J.C.3
Debarnot, C.4
Benarroch, D.5
Khromykh, A.6
Despres, P.7
Egloff, M.P.8
Canard, B.9
-
28
-
-
0029927505
-
Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels
-
Shevchenko A, Wilm M, Vorm O, Mann M (1996) Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels. Anal Chem 68: 850-858.
-
(1996)
Anal Chem
, vol.68
, pp. 850-858
-
-
Shevchenko, A.1
Wilm, M.2
Vorm, O.3
Mann, M.4
-
29
-
-
0042164218
-
Unique and conserved features of genome and proteome of SARS-coronavirus, an early split-off from the coronavirus group 2 lineage
-
Snijder EJ, Bredenbeek PJ, Dobbe JC, Thiel V, Ziebuhr J, Poon LL, Guan Y, Rozanov M, Spaan WJ, Gorbalenya AE (2003) Unique and conserved features of genome and proteome of SARS-coronavirus, an early split-off from the coronavirus group 2 lineage. J Mol Biol 331: 991-1004.
-
(2003)
J Mol Biol
, vol.331
, pp. 991-1004
-
-
Snijder, E.J.1
Bredenbeek, P.J.2
Dobbe, J.C.3
Thiel, V.4
Ziebuhr, J.5
Poon, L.L.6
Guan, Y.7
Rozanov, M.8
Spaan, W.J.9
Gorbalenya, A.E.10
-
30
-
-
0034122512
-
Host protein interactions with the 3' end of bovine coronavirus RNA and the requirement of the poly(A) tail for coronavirus defective genome replication
-
Spagnolo JF, Hogue BG (2000) Host protein interactions with the 3' end of bovine coronavirus RNA and the requirement of the poly(A) tail for coronavirus defective genome replication. J Virol 74: 5053-5065.
-
(2000)
J Virol
, vol.74
, pp. 5053-5065
-
-
Spagnolo, J.F.1
Hogue, B.G.2
-
31
-
-
0035703841
-
Requirement of the poly(A) tail in coronavirus genome replication
-
Spagnolo JF, Hogue BG (2001) Requirement of the poly(A) tail in coronavirus genome replication. Adv Exp Med Biol 494: 467-474.
-
(2001)
Adv Exp Med Biol
, vol.494
, pp. 467-474
-
-
Spagnolo, J.F.1
Hogue, B.G.2
-
32
-
-
36249014260
-
Stimulation of picornavirus replication by the poly(A) tail in a cell-free extract is largely independent of the poly(A) binding protein (PABP)
-
Svitkin YV, Costa-Mattioli M, Herdy B, Perreault S, Sonenberg N (2007) Stimulation of picornavirus replication by the poly(A) tail in a cell-free extract is largely independent of the poly(A) binding protein (PABP). RNA 13: 2330-2340.
-
(2007)
Rna
, vol.13
, pp. 2330-2340
-
-
Svitkin, Y.V.1
Costa-Mattioli, M.2
Herdy, B.3
Perreault, S.4
Sonenberg, N.5
-
33
-
-
75649133168
-
The RNA polymerase activity of SARS-coronavirus nsp12 is primer dependent
-
te Velthuis AJ, Arnold JJ, Cameron CE, van den Worm SH, Snijder EJ (2010) The RNA polymerase activity of SARS-coronavirus nsp12 is primer dependent. Nucleic Acids Res 38: 203-214.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 203-214
-
-
te Velthuis, A.J.1
Arnold, J.J.2
Cameron, C.E.3
van den Worm, S.H.4
Snijder, E.J.5
-
34
-
-
75649133168
-
The RNA polymerase activity of SARS-coronavirus nsp12 is primer dependent
-
te Velthuis AJ, Arnold JJ, Cameron CE, van den Worm SH, Snijder EJ (2010) The RNA polymerase activity of SARS-coronavirus nsp12 is primer dependent. Nucleic Acids Res 38: 203-214.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 203-214
-
-
te Velthuis, A.J.1
Arnold, J.J.2
Cameron, C.E.3
van den Worm, S.H.4
Snijder, E.J.5
-
35
-
-
0042377358
-
Mechanisms and enzymes involved in SARS coronavirus genome expression
-
Thiel V, Ivanov KA, Putics A, Hertzig T, Schelle B, Bayer S, Weissbrich B, Snijder EJ, Rabenau H, Doerr HW, Gorbalenya AE, Ziebuhr J (2003) Mechanisms and enzymes involved in SARS coronavirus genome expression. J Gen Virol 84: 2305-2315.
-
(2003)
J Gen Virol
, vol.84
, pp. 2305-2315
-
-
Thiel, V.1
Ivanov, K.A.2
Putics, A.3
Hertzig, T.4
Schelle, B.5
Bayer, S.6
Weissbrich, B.7
Snijder, E.J.8
Rabenau, H.9
Doerr, H.W.10
Gorbalenya, A.E.11
Ziebuhr, J.12
-
36
-
-
0033009763
-
Sufficient length of a poly(A) tail for the formation of a potential pseudoknot is required for efficient replication of bamboo mosaic potexvirus RNA
-
Tsai CH, Cheng CP, Peng CW, Lin BY, Lin NS, Hsu YH (1999) Sufficient length of a poly(A) tail for the formation of a potential pseudoknot is required for efficient replication of bamboo mosaic potexvirus RNA. J Virol 73: 2703-2709.
-
(1999)
J Virol
, vol.73
, pp. 2703-2709
-
-
Tsai, C.H.1
Cheng, C.P.2
Peng, C.W.3
Lin, B.Y.4
Lin, N.S.5
Hsu, Y.H.6
-
37
-
-
2442677715
-
Initiation of viral RNA-dependent RNA polymerization
-
van Dijk AA, Makeyev EV, Bamford DH (2004) Initiation of viral RNA-dependent RNA polymerization. J Gen Virol 85: 1077-1093.
-
(2004)
J Gen Virol
, vol.85
, pp. 1077-1093
-
-
van Dijk, A.A.1
Makeyev, E.V.2
Bamford, D.H.3
-
38
-
-
44449098281
-
SARS-coronavirus replication/transcription complexes are membrane-protected and need a host factor for activity in vitro
-
van Hemert MJ, van den Worm SH, Knoops K, Mommaas AM, Gorbalenya AE, Snijder EJ (2008) SARS-coronavirus replication/transcription complexes are membrane-protected and need a host factor for activity in vitro. PLoS Pathog 4: e1000054.
-
(2008)
PLoS Pathog
, vol.4
-
-
van Hemert, M.J.1
van den Worm, S.H.2
Knoops, K.3
Mommaas, A.M.4
Gorbalenya, A.E.5
Snijder, E.J.6
-
39
-
-
0346888670
-
Molecular model of SARS coronavirus polymerase: implications for biochemical functions and drug design
-
Xu X, Liu Y, Weiss S, Arnold E, Sarafianos SG, Ding J (2003) Molecular model of SARS coronavirus polymerase: implications for biochemical functions and drug design. Nucleic Acids Res 31: 7117-7130.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 7117-7130
-
-
Xu, X.1
Liu, Y.2
Weiss, S.3
Arnold, E.4
Sarafianos, S.G.5
Ding, J.6
-
40
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker M (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31: 3406-3415.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
41
-
-
38349176520
-
Genetic interactions between an essential 3' cis-acting RNA pseudoknot, replicase gene products, and the extreme 3' end of the mouse coronavirus genome
-
Zust R, Miller TB, Goebel SJ, Thiel V, Masters PS (2008) Genetic interactions between an essential 3' cis-acting RNA pseudoknot, replicase gene products, and the extreme 3' end of the mouse coronavirus genome. J Virol 82: 1214-1228.
-
(2008)
J Virol
, vol.82
, pp. 1214-1228
-
-
Zust, R.1
Miller, T.B.2
Goebel, S.J.3
Thiel, V.4
Masters, P.S.5
|