-
1
-
-
0033788228
-
The ends of the affair: Capping and polyadenylation
-
PMID:11017188
-
Shatkin AJ, Manley JL. The ends of the affair: capping and polyadenylation. Nat Struct Biol 2000; 7:838-42; PMID:11017188; http://dx.doi.org/10.1038/79583.
-
(2000)
Nat Struct Biol
, vol.7
, pp. 838-842
-
-
Shatkin, A.J.1
Manley, J.L.2
-
2
-
-
84857761249
-
Pre-mRNA 3'-end processing complex assembly and function
-
PMID:21957020
-
Chan S, Choi EA, Shi Y. Pre-mRNA 3'-end processing complex assembly and function. Wiley Interdiscip Rev RNA 2011; 2:321-35; PMID:21957020; http://dx.doi.org/10.1002/wrna.54.
-
(2011)
Wiley Interdiscip Rev RNA
, vol.2
, pp. 321-335
-
-
Chan, S.1
Choi, E.A.2
Shi, Y.3
-
3
-
-
0033059981
-
Formation of mRNA 3' ends in eukaryotes: Mechanism, regulation, and interrelationships with other steps in mRNA synthesis
-
PMID:10357856
-
Zhao J, Hyman L, Moore C. Formation of mRNA 3' ends in eukaryotes: mechanism, regulation, and interrelationships with other steps in mRNA synthesis. Microbiol Mol Biol Rev 1999; 63:405-45; PMID:10357856.
-
(1999)
Microbiol Mol Biol Rev
, vol.63
, pp. 405-445
-
-
Zhao, J.1
Hyman, L.2
Moore, C.3
-
4
-
-
0024730494
-
Two phases in the addition of a poly(A) tail
-
PMID:2575065
-
Sheets MD, Wickens M. Two phases in the addition of a poly(A) tail. Genes Dev 1989; 3:1401-12; PMID:2575065; http://dx.doi.org/10.1101/gad.3.9.1401.
-
(1989)
Genes Dev
, vol.3
, pp. 1401-1412
-
-
Sheets, M.D.1
Wickens, M.2
-
5
-
-
13744254695
-
A large-scale analysis of mRNA polyadenylation of human and mouse genes
-
PMID:15647503
-
Tian B, Hu J, Zhang H, Lutz CS. A large-scale analysis of mRNA polyadenylation of human and mouse genes. Nucleic Acids Res 2005; 33:201-12; PMID:15647503; http://dx.doi.org/10.1093/nar/gki158.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 201-212
-
-
Tian, B.1
Hu, J.2
Zhang, H.3
Lutz, C.S.4
-
6
-
-
84857772692
-
Alternative mRNA polyad-enylation in eukaryotes: An effective regulator of gene expression
-
PMID:21956967
-
Lutz CS, Moreira AM. Alternative mRNA polyad-enylation in eukaryotes: an effective regulator of gene expression. Wiley Interdiscip Rev RNA 2011; 2:22-31; PMID:21956967; http://dx.doi.org/10.1002/wrna.47.
-
(2011)
Wiley Interdiscip Rev RNA
, vol.2
, pp. 22-31
-
-
Lutz, C.S.1
Moreira, A.M.2
-
7
-
-
80052979140
-
Mechanisms and consequences of alternative polyade-nylation
-
PMID:21925375
-
Di Giammartino DC, Nishida K, Manley JL. Mechanisms and consequences of alternative polyade-nylation. Mol Cell 2011; 43:853-66; PMID:21925375; http://dx.doi.org/10.1016/j.molcel.2011.08.017.
-
(2011)
Mol Cell
, vol.43
, pp. 853-866
-
-
Di Giammartino, D.C.1
Nishida, K.2
Manley, J.L.3
-
8
-
-
77951977370
-
A functional human Poly(A) site requires only a potent DSE and an A-rich upstream sequence
-
PMID:20339349
-
Nunes NM, Li W, Tian B, Furger A. A functional human Poly(A) site requires only a potent DSE and an A-rich upstream sequence. EMBO J 2010; 29:1523-36; PMID:20339349; http://dx.doi.org/10.1038/emboj.2010.42.
-
(2010)
EMBO J
, vol.29
, pp. 1523-1536
-
-
Nunes, N.M.1
Li, W.2
Tian, B.3
Furger, A.4
-
9
-
-
18244384988
-
Alternative polyadenylation of cyclooxygenase-2
-
PMID:15872218
-
Hall-Pogar T, Zhang H, Tian B, Lutz CS. Alternative polyadenylation of cyclooxygenase-2. Nucleic Acids Res 2005; 33:2565-79; PMID:15872218; http://dx.doi.org/10.1093/nar/gki544.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 2565-2579
-
-
Hall-Pogar, T.1
Zhang, H.2
Tian, B.3
Lutz, C.S.4
-
10
-
-
0032529163
-
The upstream sequence element of the C2 complement poly(A) signal activates mRNA 3' end formation by two distinct mechanisms
-
PMID:9716405
-
Moreira A, Takagaki Y, Brackenridge S, Wollerton M, Manley JL, Proudfoot NJ. The upstream sequence element of the C2 complement poly(A) signal activates mRNA 3' end formation by two distinct mechanisms. Genes Dev 1998; 12:2522-34; PMID:9716405; http://dx.doi.org/10.1101/gad.12.16.2522.
-
(1998)
Genes Dev
, vol.12
, pp. 2522-2534
-
-
Moreira, A.1
Takagaki, Y.2
Brackenridge, S.3
Wollerton, M.4
Manley, J.L.5
Proudfoot, N.J.6
-
11
-
-
0029090065
-
Upstream sequence elements enhance poly(A) site efficiency of the C2 complement gene and are phy-logenetically conserved
-
PMID:7641699
-
Moreira A, Wollerton M, Monks J, Proudfoot NJ. Upstream sequence elements enhance poly(A) site efficiency of the C2 complement gene and are phy-logenetically conserved. EMBO J 1995; 14:3809-19; PMID:7641699.
-
(1995)
EMBO J
, vol.14
, pp. 3809-3819
-
-
Moreira, A.1
Wollerton, M.2
Monks, J.3
Proudfoot, N.J.4
-
12
-
-
0030832260
-
Transcription and polyadenylation in a short human intergenic region
-
PMID:9171082
-
Brackenridge S, Ashe HL, Giacca M, Proudfoot NJ. Transcription and polyadenylation in a short human intergenic region. Nucleic Acids Res 1997; 25:2326-36; PMID:9171082; http://dx.doi.org/10.1093/nar/25.12.2326.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 2326-2336
-
-
Brackenridge, S.1
Ashe, H.L.2
Giacca, M.3
Proudfoot, N.J.4
-
13
-
-
0034034012
-
Recruitment of a basal polyadenylation factor by the upstream sequence element of the human lamin B2 polyadenylation signal
-
PMID:10733568
-
Brackenridge S, Proudfoot NJ. Recruitment of a basal polyadenylation factor by the upstream sequence element of the human lamin B2 polyadenylation signal. Mol Cell Biol 2000; 20:2660-9; PMID:10733568; http://dx.doi.org/10.1128/ MCB.20.8.2660-2669.2000.
-
(2000)
Mol Cell Biol
, vol.20
, pp. 2660-2669
-
-
Brackenridge, S.1
Proudfoot, N.J.2
-
14
-
-
0037044739
-
Upstream elements present in the 3'-untranslated region of collagen genes influence the processing efficiency of overlapping polyadenylation signals
-
PMID:12200454
-
Natalizio BJ, Muniz LC, Arhin GK, Wilusz J, Lutz CS. Upstream elements present in the 3'-untranslated region of collagen genes influence the processing efficiency of overlapping polyadenylation signals. J Biol Chem 2002; 277:42733-40; PMID:12200454; http://dx.doi.org/10.1074/jbc.M208070200.
-
(2002)
J Biol Chem
, vol.277
, pp. 42733-42740
-
-
Natalizio, B.J.1
Muniz, L.C.2
Arhin, G.K.3
Wilusz, J.4
Lutz, C.S.5
-
15
-
-
0037184048
-
The cleavage/polyadenylation activity triggered by a U-rich motif sequence is differently required depending on the poly(A) site location at either the first or last 3'-termi-nal exon of the 2'-5' oligo(A) synthetase gene
-
PMID:12082089
-
Aissouni Y, Perez C, Calmels B, Benech PD. The cleavage/polyadenylation activity triggered by a U-rich motif sequence is differently required depending on the poly(A) site location at either the first or last 3'-termi-nal exon of the 2'-5' oligo(A) synthetase gene. J Biol Chem 2002; 277:35808-14; PMID:12082089; http://dx.doi.org/10.1074/jbc.M200540200.
-
(2002)
J Biol Chem
, vol.277
, pp. 35808-35814
-
-
Aissouni, Y.1
Perez, C.2
Calmels, B.3
Benech, P.D.4
-
16
-
-
38949111543
-
3' end mRNA processing: Molecular mechanisms and implications for health and disease
-
PMID:18256699
-
Danckwardt S, Hentze MW, Kulozik AE. 3' end mRNA processing: molecular mechanisms and implications for health and disease. EMBO J 2008; 27:482-98; PMID:18256699; http://dx.doi.org/10.1038/sj.emboj.7601932.
-
(2008)
EMBO J
, vol.27
, pp. 482-498
-
-
Danckwardt, S.1
Hentze, M.W.2
Kulozik, A.E.3
-
17
-
-
14244261496
-
The relationship between the prothrom-bin upstream sequence element and the G20210A polymorphism: The influence of a competitive environment for mRNA 3'-end formation
-
PMID:15718300
-
Sachchithananthan M, Stasinopoulos SJ, Wilusz J, Medcalf RL. The relationship between the prothrom-bin upstream sequence element and the G20210A polymorphism: the influence of a competitive environment for mRNA 3'-end formation. Nucleic Acids Res 2005; 33:1010-20; PMID:15718300; http://dx.doi.org/10.1093/nar/gki245.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 1010-1020
-
-
Sachchithananthan, M.1
Stasinopoulos, S.J.2
Wilusz, J.3
Medcalf, R.L.4
-
18
-
-
22344439263
-
Analysis of a noncanonical poly(A) site reveals a tripartite mechanism for vertebrate poly(A) site recognition
-
PMID:15937220
-
Venkataraman K, Brown KM, Gilmartin GM. Analysis of a noncanonical poly(A) site reveals a tripartite mechanism for vertebrate poly(A) site recognition. Genes Dev 2005; 19:1315-27; PMID:15937220; http://dx.doi.org/10. 1101/gad.1298605.
-
(2005)
Genes Dev
, vol.19
, pp. 1315-1327
-
-
Venkataraman, K.1
Brown, K.M.2
Gilmartin, G.M.3
-
19
-
-
84859266588
-
The structure of human Cleavage Factor im hints at functions beyond UGUA-specific RNA binding: A role in alternative polyadenylation and a potential link to 5' capping and splicing
-
PMID:21881408
-
Yang Q, Gilmartin GM, Doublié S. The structure of human Cleavage Factor Im hints at functions beyond UGUA-specific RNA binding: A role in alternative polyadenylation and a potential link to 5' capping and splicing. RNA Biol 2011; 8:748-53; PMID:21881408; http://dx.doi.org/10.4161/rna.8.5.16040.
-
(2011)
RNA Biol
, vol.8
, pp. 748-753
-
-
Yang, Q.1
Gilmartin, G.M.2
Doublié, S.3
-
20
-
-
0029052435
-
The G-rich auxiliary downstream element has distinct sequence and position requirements and mediates efficient 3' end pre-mRNA processing through a trans-acting factor
-
PMID:7784220
-
Bagga PS, Ford LP, Chen F, Wilusz J. The G-rich auxiliary downstream element has distinct sequence and position requirements and mediates efficient 3' end pre-mRNA processing through a trans-acting factor. Nucleic Acids Res 1995; 23:1625-31; PMID:7784220; http://dx.doi.org/10.1093/nar/23.9.1625.
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 1625-1631
-
-
Bagga, P.S.1
Ford, L.P.2
Chen, F.3
Wilusz, J.4
-
21
-
-
0037089136
-
Downstream sequence elements with different affinities for the hnRNP H/H' protein influence the processing efficiency of mammalian polyadenyl-ation signals
-
PMID:11937639
-
Arhin GK, Boots M, Bagga PS, Milcarek C, Wilusz J. Downstream sequence elements with different affinities for the hnRNP H/H' protein influence the processing efficiency of mammalian polyadenyl-ation signals. Nucleic Acids Res 2002; 30:1842-50; PMID:11937639; http://dx.doi.org/10.1093/nar/30.8.1842.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 1842-1850
-
-
Arhin, G.K.1
Boots, M.2
Bagga, P.S.3
Milcarek, C.4
Wilusz, J.5
-
22
-
-
30044446861
-
The hnRNPs F and H2 bind to similar sequences to influence gene expression
-
PMID:16171461
-
Alkan SA, Martincic K, Milcarek C. The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J 2006; 393:361-71; PMID:16171461; http://dx.doi.org/10.1042/BJ20050538.
-
(2006)
Biochem J
, vol.393
, pp. 361-371
-
-
Alkan, S.A.1
Martincic, K.2
Milcarek, C.3
-
23
-
-
0035145592
-
HnRNP F influences binding of a 64-kilodalton subunit of cleavage stimulation factor to mRNA precursors in mouse B cells
-
PMID:11158309
-
Veraldi KL, Arhin GK, Martincic K, Chung-Ganster LH, Wilusz J, Milcarek C. hnRNP F influences binding of a 64-kilodalton subunit of cleavage stimulation factor to mRNA precursors in mouse B cells. Mol Cell Biol 2001; 21:1228-38; PMID:11158309; http://dx.doi.org/10.1128/MCB.21.4.1228-1238.2001.
-
(2001)
Mol Cell Biol
, vol.21
, pp. 1228-1238
-
-
Veraldi, K.L.1
Arhin, G.K.2
Martincic, K.3
Chung-Ganster, L.H.4
Wilusz, J.5
Milcarek, C.6
-
24
-
-
0032526887
-
Auxiliary downstream elements are required for efficient polyadenylation of mammalian pre-mRNAs
-
PMID:9611233
-
Chen F, Wilusz J. Auxiliary downstream elements are required for efficient polyadenylation of mammalian pre-mRNAs. Nucleic Acids Res 1998; 26:2891-8; PMID:9611233; http://dx.doi.org/10.1093/nar/26.12.2891.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 2891-2898
-
-
Chen, F.1
Wilusz, J.2
-
25
-
-
25844497003
-
Bioinformatic identification of candidate cis-regulatory elements involved in human mRNA polyadenylation
-
PMID:16131587
-
Hu J, Lutz CS, Wilusz J, Tian B. Bioinformatic identification of candidate cis-regulatory elements involved in human mRNA polyadenylation. RNA 2005; 11:1485-93; PMID:16131587; http://dx.doi.org/10.1261/rna.2107305.
-
(2005)
RNA
, vol.11
, pp. 1485-1493
-
-
Hu, J.1
Lutz, C.S.2
Wilusz, J.3
Tian, B.4
-
26
-
-
42949128099
-
In vivo methods to assess polyadenylation
-
J Wilusz, ed.
-
Hague LK, Hall-Pogar T, Lutz CS. (2008) In vivo methods to assess polyadenylation. In, Methods in Molecular Biology, J Wilusz, ed. 419: 171-185.
-
(2008)
Methods in Molecular Biology
, vol.419
, pp. 171-185
-
-
Hague, L.K.1
Hall-Pogar, T.2
Lutz, C.S.3
-
27
-
-
0024457824
-
Efficiency of utilization of the simian virus 40 late polyadenylation site: Effects of upstream sequences
-
PMID:2573828
-
Carswell S, Alwine JC. Efficiency of utilization of the simian virus 40 late polyadenylation site: effects of upstream sequences. Mol Cell Biol 1989; 9:4248-58; PMID:2573828.
-
(1989)
Mol Cell Biol
, vol.9
, pp. 4248-4258
-
-
Carswell, S.1
Alwine, J.C.2
-
28
-
-
0021473965
-
Sequences on the 3' side of hexanucleotide AAUAAA affect efficiency of cleavage at the polyadenylation site
-
PMID:6149460
-
Sadofsky M, Alwine JC. Sequences on the 3' side of hexanucleotide AAUAAA affect efficiency of cleavage at the polyadenylation site. Mol Cell Biol 1984; 4:1460-8; PMID:6149460.
-
(1984)
Mol Cell Biol
, vol.4
, pp. 1460-1468
-
-
Sadofsky, M.1
Alwine, J.C.2
-
29
-
-
0026492131
-
Definition of the upstream efficiency element of the simian virus 40 late polyadenylation signal by using in vitro analyses
-
PMID:1333042
-
Schek N, Cooke C, Alwine JC. Definition of the upstream efficiency element of the simian virus 40 late polyadenylation signal by using in vitro analyses. Mol Cell Biol 1992; 12:5386-93; PMID:1333042.
-
(1992)
Mol Cell Biol
, vol.12
, pp. 5386-5393
-
-
Schek, N.1
Cooke, C.2
Alwine, J.C.3
-
30
-
-
0033555335
-
The ability of the HIV-1 AAUAAA signal to bind polyad-enylation factors is controlled by local RNA structure
-
PMID:9862964
-
Klasens BI, Thiesen M, Virtanen A, Berkhout B. The ability of the HIV-1 AAUAAA signal to bind polyad-enylation factors is controlled by local RNA structure. Nucleic Acids Res 1999; 27:446-54; PMID:9862964; http://dx.doi.org/ 10.1093/nar/27.2.446.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 446-454
-
-
Klasens, B.I.1
Thiesen, M.2
Virtanen, A.3
Berkhout, B.4
-
31
-
-
0030464973
-
Crystal structure of the coat protein from the GA bacteriophage: Model of the unassembled dimer
-
PMID:8976557
-
Ni CZ, White CA, Mitchell RS, Wickersham J, Kodandapani R, Peabody DS, et al. Crystal structure of the coat protein from the GA bacteriophage: model of the unassembled dimer. Protein Sci 1996; 5:2485-93; PMID:8976557; http://dx.doi.org/10.1002/pro.5560051211.
-
(1996)
Protein Sci
, vol.5
, pp. 2485-2493
-
-
Ni, C.Z.1
White, C.A.2
Mitchell, R.S.3
Wickersham, J.4
Kodandapani, R.5
Peabody, D.S.6
-
32
-
-
34250797537
-
Specific trans-acting proteins interact with auxiliary RNA poly-adenylation elements in the COX-2 3'-UTR
-
PMID:17507659
-
Hall-Pogar T, Liang S, Hague LK, Lutz CS. Specific trans-acting proteins interact with auxiliary RNA poly-adenylation elements in the COX-2 3'-UTR. RNA 2007; 13:1103-15; PMID:17507659; http://dx.doi.org/10.1261/rna.577707.
-
(2007)
RNA
, vol.13
, pp. 1103-1115
-
-
Hall-Pogar, T.1
Liang, S.2
Hague, L.K.3
Lutz, C.S.4
-
33
-
-
34250012298
-
Splicing factors stimulate polyadenylation via USEs at non-canonical 3' end formation signals
-
PMID:17464285
-
Danckwardt S, Kaufmann I, Gentzel M, Foerstner KU, Gantzert AS, Gehring NH, et al. Splicing factors stimulate polyadenylation via USEs at non-canonical 3' end formation signals. EMBO J 2007; 26:2658-69; PMID:17464285; http://dx.doi.org/10.1038/sj.emboj.7601699.
-
(2007)
EMBO J
, vol.26
, pp. 2658-2669
-
-
Danckwardt, S.1
Kaufmann, I.2
Gentzel, M.3
Foerstner, K.U.4
Gantzert, A.S.5
Gehring, N.H.6
-
34
-
-
0036223676
-
The poly(C)-binding proteins: A multiplicity of functions and a search for mechanisms
-
PMID:12003487
-
Makeyev AV, Liebhaber SA. The poly(C)-binding proteins: a multiplicity of functions and a search for mechanisms. RNA 2002; 8:265-78; PMID:12003487; http://dx.doi.org/10.1017/S1355838202024627.
-
(2002)
RNA
, vol.8
, pp. 265-278
-
-
Makeyev, A.V.1
Liebhaber, S.A.2
-
35
-
-
4444324795
-
Bringing the role of mRNA decay in the control of gene expression into focus
-
PMID:15363903
-
Wilusz CJ, Wilusz J. Bringing the role of mRNA decay in the control of gene expression into focus. Trends Genet 2004; 20:491-7; PMID:15363903; http://dx.doi.org/10.1016/j.tig.2004.07.011.
-
(2004)
Trends Genet
, vol.20
, pp. 491-497
-
-
Wilusz, C.J.1
Wilusz, J.2
-
36
-
-
33847771442
-
The highways and byways of mRNA decay
-
PMID:17245413
-
Garneau NL, Wilusz J, Wilusz CJ. The highways and byways of mRNA decay. Nat Rev Mol Cell Biol 2007; 8:113-26; PMID:17245413; http://dx.doi.org/10.1038/ nrm2104.
-
(2007)
Nat Rev Mol Cell Biol
, vol.8
, pp. 113-126
-
-
Garneau, N.L.1
Wilusz, J.2
Wilusz, C.J.3
-
37
-
-
85046916288
-
Alternative polyadenylation of MeCP2: Influence of cis-acting elements and trans-acting factors
-
PMID:20400852
-
Newnham CM, Hall-Pogar T, Liang S, Wu J, Tian B, Hu J, et al. Alternative polyadenylation of MeCP2: Influence of cis-acting elements and trans-acting factors. RNA Biol 2010; 7:361-72; PMID:20400852; http://dx.doi.org/10.4161/rna. 7.3.11564.
-
(2010)
RNA Biol
, vol.7
, pp. 361-372
-
-
Newnham, C.M.1
Hall-Pogar, T.2
Liang, S.3
Wu, J.4
Tian, B.5
Hu, J.6
|