-
1
-
-
4444346217
-
Metabolic labeling of mammalian organisms with stable isotopes for quantitative proteomic analysis
-
Wu, C. C., MacCoss, M. J., Howell, K. E., Matthews, D. E. et al., Metabolic labeling of mammalian organisms with stable isotopes for quantitative proteomic analysis. Anal. Chem. 2004, 76, 4951-4959.
-
(2004)
Anal. Chem.
, vol.76
, pp. 4951-4959
-
-
Wu, C.C.1
MacCoss, M.J.2
Howell, K.E.3
Matthews, D.E.4
-
2
-
-
0036583926
-
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
-
Ong, S. E., Blagoev, B., Kratchmarova, I., Kristensen, D. B. et al., Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol. Cell. Proteomics 2002, 1, 376-386.
-
(2002)
Mol. Cell. Proteomics
, vol.1
, pp. 376-386
-
-
Ong, S.E.1
Blagoev, B.2
Kratchmarova, I.3
Kristensen, D.B.4
-
3
-
-
84856349210
-
Psychiatric disorder biomarker discovery using quantitative proteomics
-
Filiou, M. D., Turck, C. W., Psychiatric disorder biomarker discovery using quantitative proteomics. Methods Mol. Biol. 2012, 829, 531-539.
-
(2012)
Methods Mol. Biol.
, vol.829
, pp. 531-539
-
-
Filiou, M.D.1
Turck, C.W.2
-
4
-
-
45649083365
-
Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study
-
Bindschedler, L. V., Palmblad, M., Cramer, R., Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study. Phytochemistry 2008, 69, 1962-1972.
-
(2008)
Phytochemistry
, vol.69
, pp. 1962-1972
-
-
Bindschedler, L.V.1
Palmblad, M.2
Cramer, R.3
-
6
-
-
34547810054
-
Quantitative mass spectrometry identifies insulin signaling targets in C. elegans
-
Dong, M. Q., Venable, J. D., Au, N., Xu, T. et al., Quantitative mass spectrometry identifies insulin signaling targets in C. elegans. Science 2007, 317, 660-663.
-
(2007)
Science
, vol.317
, pp. 660-663
-
-
Dong, M.Q.1
Venable, J.D.2
Au, N.3
Xu, T.4
-
7
-
-
34249650777
-
Comparison of full versus partial metabolic labeling for quantitative proteomics analysis in Arabidopsis thaliana
-
Huttlin, E. L., Hegeman, A. D., Harms, A. C., Sussman, M. R., Comparison of full versus partial metabolic labeling for quantitative proteomics analysis in Arabidopsis thaliana. Mol. Cell. Proteomics 2007, 6, 860-881.
-
(2007)
Mol. Cell. Proteomics
, vol.6
, pp. 860-881
-
-
Huttlin, E.L.1
Hegeman, A.D.2
Harms, A.C.3
Sussman, M.R.4
-
8
-
-
66149117089
-
Definition of Arabidopsis sterol-rich membrane microdomains by differential treatment with methyl-beta-cyclodextrin and quantitative proteomics
-
Kierszniowska, S., Seiwert, B., Schulze, W. X., Definition of Arabidopsis sterol-rich membrane microdomains by differential treatment with methyl-beta-cyclodextrin and quantitative proteomics. Mol. Cell. Proteomics 2009, 8, 612-623.
-
(2009)
Mol. Cell. Proteomics
, vol.8
, pp. 612-623
-
-
Kierszniowska, S.1
Seiwert, B.2
Schulze, W.X.3
-
9
-
-
65349168849
-
15N-labeling experiments as a robust tool in detection of candidate proteins responding to biological treatment
-
15N-labeling experiments as a robust tool in detection of candidate proteins responding to biological treatment. Proteomics 2009, 9, 1916-1924.
-
(2009)
Proteomics
, vol.9
, pp. 1916-1924
-
-
Kierszniowska, S.1
Walther, D.2
Schulze, W.X.3
-
10
-
-
0041706161
-
Metabolic labeling of C. elegans and D. melanogaster for quantitative proteomics
-
Krijgsveld, J., Ketting, R. F., Mahmoudi, T., Johansen, J. et al., Metabolic labeling of C. elegans and D. melanogaster for quantitative proteomics. Nat. Biotechnol. 2003, 21, 927-931.
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 927-931
-
-
Krijgsveld, J.1
Ketting, R.F.2
Mahmoudi, T.3
Johansen, J.4
-
11
-
-
33947409609
-
15N-metabolic labeling for comparative plasma membrane proteomics in Arabidopsis cells
-
15N-metabolic labeling for comparative plasma membrane proteomics in Arabidopsis cells. Proteomics 2007, 7, 750-754.
-
(2007)
Proteomics
, vol.7
, pp. 750-754
-
-
Lanquar, V.1
Kuhn, L.2
Lelievre, F.3
Khafif, M.4
-
12
-
-
0033535961
-
Accurate quantitation of protein expression and site-specific phosphorylation
-
Oda, Y., Huang, K., Cross, F. R., Cowburn, D. et al., Accurate quantitation of protein expression and site-specific phosphorylation. Proc. Natl. Acad. Sci. USA 1999, 96, 6591-6596.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 6591-6596
-
-
Oda, Y.1
Huang, K.2
Cross, F.R.3
Cowburn, D.4
-
13
-
-
35348939574
-
15N-labeling, MASCOT, and the trans-proteomic pipeline
-
15N-labeling, MASCOT, and the trans-proteomic pipeline. Proteomics 2007, 7, 3462-3469.
-
(2007)
Proteomics
, vol.7
, pp. 3462-3469
-
-
Palmblad, M.1
Bindschedler, L.V.2
Cramer, R.3
-
14
-
-
43849089302
-
Characterization of anaerobic catabolism of p-coumarate in Rhodopseudomonas palustris by integrating transcriptomics and quantitative proteomics
-
Pan, C., Oda, Y., Lankford, P. K., Zhang, B. et al., Characterization of anaerobic catabolism of p-coumarate in Rhodopseudomonas palustris by integrating transcriptomics and quantitative proteomics. Mol. Cell. Proteomics 2008, 7, 938-948.
-
(2008)
Mol. Cell. Proteomics
, vol.7
, pp. 938-948
-
-
Pan, C.1
Oda, Y.2
Lankford, P.K.3
Zhang, B.4
-
15
-
-
57649093858
-
SILIP: A novel stable isotope labeling method for in planta quantitative proteomic analysis
-
Schaff, J. E., Mbeunkui, F., Blackburn, K., Bird, D. M. et al., SILIP: A novel stable isotope labeling method for in planta quantitative proteomic analysis. Plant J. 2008, 56, 840-854.
-
(2008)
Plant J.
, vol.56
, pp. 840-854
-
-
Schaff, J.E.1
Mbeunkui, F.2
Blackburn, K.3
Bird, D.M.4
-
16
-
-
70649093033
-
15N-enriched bacteria diet for improved proteomic analyses of mouse models for psychopathologies
-
15N-enriched bacteria diet for improved proteomic analyses of mouse models for psychopathologies. PLoS ONE 2009, 4, e7821.
-
(2009)
PLoS ONE
, vol.4
-
-
Frank, E.1
Kessler, M.S.2
Filiou, M.D.3
Zhang, Y.4
-
17
-
-
47549099572
-
SILAC mouse for quantitative proteomics uncovers kindlin-3 as an essential factor for red blood cell function
-
Kruger, M., Moser, M., Ussar, S., Thievessen, I. et al., SILAC mouse for quantitative proteomics uncovers kindlin-3 as an essential factor for red blood cell function. Cell 2008, 134, 353-364.
-
(2008)
Cell
, vol.134
, pp. 353-364
-
-
Kruger, M.1
Moser, M.2
Ussar, S.3
Thievessen, I.4
-
18
-
-
80055098123
-
Proteomics and metabolomics analysis of a trait anxiety mouse model reveals divergent mitochondrial pathways
-
Filiou, M. D., Zhang, Y., Teplytska, L., Reckow, S. et al., Proteomics and metabolomics analysis of a trait anxiety mouse model reveals divergent mitochondrial pathways. Biol. Psychiatry 2011, 70, 1074-1082.
-
(2011)
Biol. Psychiatry
, vol.70
, pp. 1074-1082
-
-
Filiou, M.D.1
Zhang, Y.2
Teplytska, L.3
Reckow, S.4
-
19
-
-
70350133594
-
Discovery and validation of colonic tumor-associated proteins via metabolic labeling and stable isotopic dilution
-
Huttlin, E. L., Chen, X., Barrett-Wilt, G. A., Hegeman, A. D. et al., Discovery and validation of colonic tumor-associated proteins via metabolic labeling and stable isotopic dilution. Proc. Natl. Acad. Sci. USA 2009, 106, 17235-17240.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 17235-17240
-
-
Huttlin, E.L.1
Chen, X.2
Barrett-Wilt, G.A.3
Hegeman, A.D.4
-
20
-
-
83055163839
-
Proteomic and metabolomic profiling of a trait anxiety mouse model implicates affected pathways
-
Zhang, Y., Filiou, M. D., Reckow, S., Webhofer, C. et al., Proteomic and metabolomic profiling of a trait anxiety mouse model implicates affected pathways. Mol. Cell. Proteomics 2011, 10, M111.008110.
-
(2011)
Mol. Cell. Proteomics
, vol.10
-
-
Zhang, Y.1
Filiou, M.D.2
Reckow, S.3
Webhofer, C.4
-
22
-
-
33749062913
-
ProRata: a quantitative proteomics program for accurate protein abundance ratio estimation with confidence interval evaluation
-
Pan, C., Kora, G., McDonald, W. H., Tabb, D. L. et al., ProRata: a quantitative proteomics program for accurate protein abundance ratio estimation with confidence interval evaluation. Anal. Chem. 2006, 78, 7121-7131.
-
(2006)
Anal. Chem.
, vol.78
, pp. 7121-7131
-
-
Pan, C.1
Kora, G.2
McDonald, W.H.3
Tabb, D.L.4
-
23
-
-
77949582719
-
Census for proteome quantification
-
Park, S. K., Yates, J. R., 3rd., Census for proteome quantification. Curr. Protoc. Bioinformatics 2010, 13, 12.1-11.
-
(2010)
Curr. Protoc. Bioinformatics
, vol.13
, pp. 121-111
-
-
Park, S.K.1
Yates 3rd, J.R.2
-
24
-
-
57449099865
-
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
-
Cox, J., Mann, M., MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat. Biotechnol. 2008, 26, 1367-1372.
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 1367-1372
-
-
Cox, J.1
Mann, M.2
-
27
-
-
79251535011
-
Quantitative proteomics for investigating psychiatric disorders
-
Filiou, M. D., Turck, C. W., Martins-de-Souza, D., Quantitative proteomics for investigating psychiatric disorders. Proteomics Clin. Appl. 2011, 5, 38-49.
-
(2011)
Proteomics Clin. Appl.
, vol.5
, pp. 38-49
-
-
Filiou, M.D.1
Turck, C.W.2
Martins-de-Souza, D.3
-
28
-
-
58149385852
-
Quantitative analysis of brain nuclear phosphoproteins identifies developmentally regulated phosphorylation events
-
Liao, L., McClatchy, D. B., Park, S. K., Xu, T. et al., Quantitative analysis of brain nuclear phosphoproteins identifies developmentally regulated phosphorylation events. J. Proteome Res. 2008, 7, 4743-4755.
-
(2008)
J. Proteome Res.
, vol.7
, pp. 4743-4755
-
-
Liao, L.1
McClatchy, D.B.2
Park, S.K.3
Xu, T.4
-
29
-
-
34548391374
-
Quantification of the synaptosomal proteome of the rat cerebellum during post-natal development
-
McClatchy, D. B., Liao, L., Park, S. K., Venable, J. D. et al., Quantification of the synaptosomal proteome of the rat cerebellum during post-natal development. Genome Res. 2007, 17, 1378-1388.
-
(2007)
Genome Res.
, vol.17
, pp. 1378-1388
-
-
McClatchy, D.B.1
Liao, L.2
Park, S.K.3
Venable, J.D.4
-
30
-
-
77951191736
-
Profiling of mouse synaptosome proteome and phosphoproteome by IEF
-
Filiou, M. D., Bisle, B., Reckow, S., Teplytska, L. et al., Profiling of mouse synaptosome proteome and phosphoproteome by IEF. Electrophoresis 2010, 31, 1294-1301.
-
(2010)
Electrophoresis
, vol.31
, pp. 1294-1301
-
-
Filiou, M.D.1
Bisle, B.2
Reckow, S.3
Teplytska, L.4
-
31
-
-
0000857494
-
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
-
Eng, J. K., McCormack, A. L., Yates, J. R. 3rd, An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J. Am. Soc. Mass Spectrom. 1994, 5, 1426-1436.
-
(1994)
J. Am. Soc. Mass Spectrom.
, vol.5
, pp. 1426-1436
-
-
Eng, J.K.1
McCormack, A.L.2
Yates 3rd, J.R.3
-
32
-
-
0036393898
-
DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics
-
Tabb, D. L., McDonald, W. H., Yates, J. R. 3rd, DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics. J. Proteome Res. 2002, 1, 21-26.
-
(2002)
J. Proteome Res.
, vol.1
, pp. 21-26
-
-
Tabb, D.L.1
McDonald, W.H.2
Yates 3rd, J.R.3
-
33
-
-
72149093828
-
Protein identification false discovery rates for very large proteomics data sets generated by tandem mass spectrometry
-
Reiter, L., Claassen, M., Schrimpf, S. P., Jovanovic, M. et al., Protein identification false discovery rates for very large proteomics data sets generated by tandem mass spectrometry. Mol. Cell. Proteomics 2009, 8, 2405-2417.
-
(2009)
Mol. Cell. Proteomics
, vol.8
, pp. 2405-2417
-
-
Reiter, L.1
Claassen, M.2
Schrimpf, S.P.3
Jovanovic, M.4
-
34
-
-
28544433959
-
Measurement of the isotope enrichment of stable isotope-labeled proteins using high-resolution mass spectra of peptides
-
MacCoss, M. J., Wu, C. C., Matthews, D. E., Yates, J. R. 3rd, Measurement of the isotope enrichment of stable isotope-labeled proteins using high-resolution mass spectra of peptides. Anal. Chem. 2005, 77, 7646-7653.
-
(2005)
Anal. Chem.
, vol.77
, pp. 7646-7653
-
-
MacCoss, M.J.1
Wu, C.C.2
Matthews, D.E.3
Yates 3rd, J.R.4
-
35
-
-
0001677717
-
Controlling the false discovery rate: a practical and powerful approach to multiple testing
-
Benjamini, Y., Hochberg, Y., Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Statist. Soc. 1995, 57, 289-300.
-
(1995)
J. R. Statist. Soc.
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
36
-
-
0033982936
-
KEGG: kyoto encyclopedia of genes and genomes
-
Kanehisa, M., Goto, S., KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 2000, 28, 27-30.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
37
-
-
77958595960
-
Isobaric protein and peptide quantification: perspectives and issues
-
Treumann, A., Thiede, B., Isobaric protein and peptide quantification: perspectives and issues. Expert Rev. Proteomics 2012, 7, 647-653.
-
(2012)
Expert Rev. Proteomics
, vol.7
, pp. 647-653
-
-
Treumann, A.1
Thiede, B.2
-
38
-
-
69149096349
-
Large D/H variations in bacterial lipids reflect central metabolic pathways
-
Zhang, X., Gillespie, A. L., Sessions, A. L., Large D/H variations in bacterial lipids reflect central metabolic pathways. Proc. Natl. Acad. Sci. USA 2009, 106, 12580-12586.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 12580-12586
-
-
Zhang, X.1
Gillespie, A.L.2
Sessions, A.L.3
-
39
-
-
0000568858
-
Applications of isotope dilution-mass spectrometry in clinical chemistry, pharmacokinetics, and toxicology
-
De Leenheer, A. P., Thienpont, L. M., Applications of isotope dilution-mass spectrometry in clinical chemistry, pharmacokinetics, and toxicology. Mass Spec. Rev. 1992, 11, 249-307.
-
(1992)
Mass Spec. Rev.
, vol.11
, pp. 249-307
-
-
De Leenheer, A.P.1
Thienpont, L.M.2
-
40
-
-
0022640655
-
Isotope effects: definitions and consequences for pharmacologic studies
-
Van Langenhove, A., Isotope effects: definitions and consequences for pharmacologic studies. J. Clin. Pharmacol. 1986, 26, 383-389.
-
(1986)
J. Clin. Pharmacol.
, vol.26
, pp. 383-389
-
-
Van Langenhove, A.1
-
41
-
-
0042857681
-
The validity of the use of tracers to follow chemical reactions
-
Bigeleisen, J., The validity of the use of tracers to follow chemical reactions. Science 1949, 110, 14-16.
-
(1949)
Science
, vol.110
, pp. 14-16
-
-
Bigeleisen, J.1
-
43
-
-
0037412021
-
15N-labeling affect Cu(I)-thiolate cluster arrangement in yeast copper-metallothionein?
-
15N-labeling affect Cu(I)-thiolate cluster arrangement in yeast copper-metallothionein? Biometals 2003, 16, 379-382.
-
(2003)
Biometals
, vol.16
, pp. 379-382
-
-
Hartmann, H.J.1
Kaup, Y.2
Weser, U.3
-
46
-
-
84865360216
-
15N isotope effect as a means for correlating phenotypic alterations and affected pathways in a trait anxiety mouse model
-
15N isotope effect as a means for correlating phenotypic alterations and affected pathways in a trait anxiety mouse model. Proteomics 2012, 12, 2421-2427.
-
(2012)
Proteomics
, vol.12
, pp. 2421-2427
-
-
Filiou, M.D.1
Webhofer, C.2
Gormanns, P.3
Zhang, Y.4
|