메뉴 건너뛰기




Volumn 106, Issue 40, 2009, Pages 17235-17240

Discovery and validation of colonic tumor-associated proteins via metabolic labeling and stable isotopic dilution

Author keywords

Colon cancer; Differential mass spectrometry; Min mouse; Proteomics; Transcriptomics

Indexed keywords

ISOTOPE; NITROGEN 15; TUMOR PROTEIN;

EID: 70350133594     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0909282106     Document Type: Article
Times cited : (29)

References (60)
  • 1
    • 67650385302 scopus 로고    scopus 로고
    • American Cancer Society (American Cancer Society, Atlanta, GA)
    • American Cancer Society (2009) Cancer Facts and Figures 2009 (American Cancer Society, Atlanta, GA).
    • (2009) Cancer Facts and Figures 2009
  • 2
    • 0035117342 scopus 로고    scopus 로고
    • American Cancer Society guidelines for the early detection of cancer: Update of early detection guidelines for prostate, colorectal, and endometrial cancers. Update 2001 - Testing for early lung cancer detection
    • quiz 77-80
    • Smith RA, et al. (2001) American Cancer Society guidelines for the early detection of cancer: Update of early detection guidelines for prostate, colorectal, and endometrial cancers. Update 2001 - testing for early lung cancer detection. CA Cancer J Clin 51:38-75; quiz 77-80.
    • (2001) CA Cancer J Clin , vol.51 , pp. 38-75
    • Smith, R.A.1
  • 3
    • 33645535554 scopus 로고    scopus 로고
    • Mouse models of gastrointestinal tumors
    • Taketo MM (2006) Mouse models of gastrointestinal tumors. Cancer Science 97:355-361.
    • (2006) Cancer Science , vol.97 , pp. 355-361
    • Taketo, M.M.1
  • 4
    • 0025015168 scopus 로고
    • A dominant mutation that predisposes to multiple intestinal neoplasia in the mouse
    • Moser AR, Pitot HC, Dove WF (1990) A dominant mutation that predisposes to multiple intestinal neoplasia in the mouse. Science 247:322-324. (Pubitemid 20046457)
    • (1990) Science , vol.247 , Issue.4940 , pp. 322-324
    • Moser, A.R.1    Pitot, H.C.2    Dove, W.F.3
  • 5
    • 0026562404 scopus 로고
    • Multiple intestinal neoplasia caused by a mutation in the murine homolog of the APC gene
    • Su LK, et al. (1992) Multiple intestinal neoplasia caused by a mutation in the murine homolog of the APC gene. Science 256:668-670.
    • (1992) Science , vol.256 , pp. 668-670
    • Su, L.K.1
  • 6
    • 35348992639 scopus 로고    scopus 로고
    • The genetics of hereditary colon cancer
    • Rustgi AK (2007) The genetics of hereditary colon cancer. Genes Dev 21:2525-2538.
    • (2007) Genes Dev , vol.21 , pp. 2525-2538
    • Rustgi, A.K.1
  • 7
    • 36248962105 scopus 로고    scopus 로고
    • The genomic landscapes ofhumanbreast and colorectal cancers
    • Wood LD, et al. (2007) The genomic landscapes ofhumanbreast and colorectal cancers. Science 318:1108-1113.
    • (2007) Science , vol.318 , pp. 1108-1113
    • Wood, L.D.1
  • 8
    • 0032875697 scopus 로고    scopus 로고
    • Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
    • Gygi SP, et al. (1999) Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nat Biotechnol 17:994-999.
    • (1999) Nat Biotechnol , vol.17 , pp. 994-999
    • Gygi, S.P.1
  • 9
    • 19944432197 scopus 로고    scopus 로고
    • Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
    • Ross PL, et al. (2004) Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Molecular and Cellular Proteomics 3:1154-1169.
    • (2004) Molecular and Cellular Proteomics , vol.3 , pp. 1154-1169
    • Ross, P.L.1
  • 10
    • 0035384687 scopus 로고    scopus 로고
    • 18O labeling for comparative proteomics: Model studies with two serotypes of adenovirus
    • DOI 10.1021/ac001404c
    • Yao X, Freas A, Ramirez J, Demirev PA, Fenselau C (2001) Proteolytic 18O labeling for comparative proteomics: Model studies with two serotypes of adenovirus. Anal Chem 73:2836-2842. (Pubitemid 32868136)
    • (2001) Analytical Chemistry , vol.73 , Issue.13 , pp. 2836-2842
    • Yao, X.1    Freas, A.2    Ramirez, J.3    Demirev, P.A.4    Fenselau, C.5
  • 11
    • 0036535357 scopus 로고    scopus 로고
    • Analysis of quantitative proteomic data generated via multidimensional protein identification technology
    • Washburn MP, Ulaszek R, Deciu C, Schieltz DM, Yates JR, III (2002) Analysis of quantitative proteomic data generated via multidimensional protein identification technology. Anal Chem 74:1650-1657.
    • (2002) Anal Chem , vol.74 , pp. 1650-1657
    • Washburn, M.P.1    Ulaszek, R.2    Deciu, C.3    Schieltz, D.M.4    Yates III, J.R.5
  • 12
    • 0036583926 scopus 로고    scopus 로고
    • Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
    • Ong SE, et al. (2002) Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Molecular and Cellular Proteomics 1:376-386.
    • (2002) Molecular and Cellular Proteomics , vol.1 , pp. 376-386
    • Ong, S.E.1
  • 13
    • 34248161925 scopus 로고    scopus 로고
    • Implications of 15N-metabolic labeling for automated peptide identification in Arabidopsis thaliana
    • Nelson CJ, Huttlin EL, Hegeman AD, Harms AC, Sussman MR (2007) Implications of 15N-metabolic labeling for automated peptide identification in Arabidopsis thaliana. Proteomics 7:1279-1292.
    • (2007) Proteomics , vol.7 , pp. 1279-1292
    • Nelson, C.J.1    Huttlin, E.L.2    Hegeman, A.D.3    Harms, A.C.4    Sussman, M.R.5
  • 14
    • 0942265386 scopus 로고    scopus 로고
    • In vivo uniform (15)N-isotope labelling of plants: Using the greenhouse for structural proteomics
    • Ippel JH, et al. (2004) In vivo uniform (15)N-isotope labelling of plants: Using the greenhouse for structural proteomics. Proteomics 4:226-234.
    • (2004) Proteomics , vol.4 , pp. 226-234
    • Ippel, J.H.1
  • 15
    • 4444346217 scopus 로고    scopus 로고
    • Metabolic labeling of mammalian organisms with stable isotopes for quantitative proteomic analysis
    • Wu CC, MacCoss MJ, Howell KE, Matthews DE, Yates JR, III (2004) Metabolic labeling of mammalian organisms with stable isotopes for quantitative proteomic analysis. Anal Chem 76:4951-4959.
    • (2004) Anal Chem , vol.76 , pp. 4951-4959
    • Wu, C.C.1    MacCoss, M.J.2    Howell, K.E.3    Matthews, D.E.4    Yates III, J.R.5
  • 19
    • 0033434080 scopus 로고    scopus 로고
    • Probability-based protein identification by searching sequence databases using mass spectrometry data
    • Perkins DN, Pappin DJ, Creasy DM, Cottrell JS (1999) Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20:3551-3567.
    • (1999) Electrophoresis , vol.20 , pp. 3551-3567
    • Perkins, D.N.1    Pappin, D.J.2    Creasy, D.M.3    Cottrell, J.S.4
  • 20
    • 33846567441 scopus 로고    scopus 로고
    • Prediction of error associated with false-positive rate determination for peptide identification in large-scale proteomics experiments using a combined reverse and forward peptide sequence database strategy
    • Huttlin EL, Hegeman AD, Harms AC, Sussman MR (2007) Prediction of error associated with false-positive rate determination for peptide identification in large-scale proteomics experiments using a combined reverse and forward peptide sequence database strategy. Journal of Proteome Research 6:392-398.
    • (2007) Journal of Proteome Research , vol.6 , pp. 392-398
    • Huttlin, E.L.1    Hegeman, A.D.2    Harms, A.C.3    Sussman, M.R.4
  • 21
    • 34547810054 scopus 로고    scopus 로고
    • Quantitative mass spectrometry identifies insulin signaling targets in C. elegans
    • Dong MQ, et al. (2007) Quantitative mass spectrometry identifies insulin signaling targets in C. elegans. Science 317:660-663.
    • (2007) Science , vol.317 , pp. 660-663
    • Dong, M.Q.1
  • 22
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate: A practical and powerful approach to multiple testing. J Roy Stat Soc B 57:289-300.
    • (1995) J Roy Stat Soc B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 24
    • 55249096894 scopus 로고    scopus 로고
    • Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast
    • de Godoy LM, et al. (2008) Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast. Nature 455:1251-1254.
    • (2008) Nature , vol.455 , pp. 1251-1254
    • De Godoy, L.M.1
  • 25
    • 38949142258 scopus 로고    scopus 로고
    • Carboxylesterase 2 is downregulated in colorectal cancer following progression of the disease
    • DOI 10.1080/07357900701560786, PII 783606846
    • Tang X, et al. (2008) Carboxylesterase 2 is downregulated in colorectal cancer following progression of the disease. Cancer Invest 26:178-181. (Pubitemid 351225462)
    • (2008) Cancer Investigation , vol.26 , Issue.2 , pp. 178-181
    • Tang, X.1    Wu, H.2    Wu, Z.3    Wang, G.4    Wang, Z.5    Zhu, D.6
  • 27
    • 63449097614 scopus 로고    scopus 로고
    • Transglutaminase 3 as a prognostic biomarker in esophageal cancer revealed by proteomics
    • Uemura N, et al. (2009) Transglutaminase 3 as a prognostic biomarker in esophageal cancer revealed by proteomics. Int J Cancer 124:2106-2115.
    • (2009) Int J Cancer , vol.124 , pp. 2106-2115
    • Uemura, N.1
  • 28
    • 0033538511 scopus 로고    scopus 로고
    • The colonic H+,K+-ATPase functions as a Na+-dependent K+(NH4+)-ATPase in apical membranes from rat distal colon
    • Codina J, Pressley TA, DuBose TD, Jr (1999) The colonic H+,K+-ATPase functions as a Na+-dependent K+(NH4+)-ATPase in apical membranes from rat distal colon. J Biol Chem 274:19693-19698.
    • (1999) J Biol Chem , vol.274 , pp. 19693-19698
    • Codina, J.1    Pressley, T.A.2    DuBose Jr., T.D.3
  • 31
    • 0026200152 scopus 로고
    • Inhibition of the Na+,K(+)-ATPase pump during induction of experimental colon cancer
    • Davies RJ, Sandle GI, Thompson SM (1991) Inhibition of the Na+,K(+)-ATPase pump during induction of experimental colon cancer. Cancer Biochemistry Biophysics 12:81-94.
    • (1991) Cancer Biochemistry Biophysics , vol.12 , pp. 81-94
    • Davies, R.J.1    Sandle, G.I.2    Thompson, S.M.3
  • 32
    • 14844315982 scopus 로고    scopus 로고
    • Novel role for Na,K-ATPase in phosphatidylinositol 3-kinase signaling and suppression of cell motility
    • Barwe SP, et al. (2005) Novel role for Na,K-ATPase in phosphatidylinositol 3-kinase signaling and suppression of cell motility. Mol Biol Cell 16:1082-1094.
    • (2005) Mol Biol Cell , vol.16 , pp. 1082-1094
    • Barwe, S.P.1
  • 33
    • 37149044827 scopus 로고    scopus 로고
    • Alpha-actinin-1 phosphorylation modulates pressure-induced colon cancer cell adhesion through regulation of focal adhesion kinase-Src interaction
    • Craig DH, Haimovich B, Basson MD (2007) Alpha-actinin-1 phosphorylation modulates pressure-induced colon cancer cell adhesion through regulation of focal adhesion kinase-Src interaction. Am J Physiol Cell Physiol 293:C1862-1874.
    • (2007) Am J Physiol Cell Physiol , vol.293
    • Craig, D.H.1    Haimovich, B.2    Basson, M.D.3
  • 34
    • 42549137908 scopus 로고    scopus 로고
    • Intestinal adenomagenesis involves core molecular signatures of the epithelial-mesenchymal transition
    • Chen X, Halberg RB, Burch RP, Dove WF (2008) Intestinal adenomagenesis involves core molecular signatures of the epithelial-mesenchymal transition. Journal of Molecular Histology 39:283-294.
    • (2008) Journal of Molecular Histology , vol.39 , pp. 283-294
    • Chen, X.1    Halberg, R.B.2    Burch, R.P.3    Dove, W.F.4
  • 35
    • 34249751083 scopus 로고    scopus 로고
    • The cytoskeletal proteins α-actinin, ezrin, and talin are de-expressed in endometriosis and endometrioid carcinoma compared with normal uterine epithelium
    • DOI 10.1097/01.pai.0000194762.78889.26, PII 0012903920070600000009
    • Slater M, Cooper M, Murphy CR (2007) The cytoskeletal proteins alpha-actinin, ezrin, and talin are de-expressed in endometriosis and endometrioid carcinoma compared with normal uterine epithelium. Applied Immunohistochemistry and Molecular Morphology 15:170-174. (Pubitemid 46828224)
    • (2007) Applied Immunohistochemistry and Molecular Morphology , vol.15 , Issue.2 , pp. 170-174
    • Slater, M.1    Cooper, M.2    Murphy, C.R.3
  • 36
    • 33645216368 scopus 로고    scopus 로고
    • The leukocyte protein L-plastin induces proliferation, invasion and loss of E-cadherin expression in colon cancer cells
    • Foran E, McWilliam P, Kelleher D, Croke DT, Long A (2006) The leukocyte protein L-plastin induces proliferation, invasion and loss of E-cadherin expression in colon cancer cells. Int J Cancer 118:2098-2104.
    • (2006) Int J Cancer , vol.118 , pp. 2098-2104
    • Foran, E.1    McWilliam, P.2    Kelleher, D.3    Croke, D.T.4    Long, A.5
  • 37
    • 33746375657 scopus 로고    scopus 로고
    • Coronins: The return of the crown
    • Uetrecht AC, Bear JE (2006) Coronins: The return of the crown. Trends Cell Biol 16:421-426.
    • (2006) Trends Cell Biol , vol.16 , pp. 421-426
    • Uetrecht, A.C.1    Bear, J.E.2
  • 39
    • 45549102800 scopus 로고    scopus 로고
    • Plasma proteome profiling of a mouse model of breast cancer identifies a set of up-regulated proteins in common with human breast cancer cells
    • Pitteri SJ, et al. (2008) Plasma proteome profiling of a mouse model of breast cancer identifies a set of up-regulated proteins in common with human breast cancer cells. Journal of Proteome Research 7:1481-1489.
    • (2008) Journal of Proteome Research , vol.7 , pp. 1481-1489
    • Pitteri, S.J.1
  • 40
    • 67651007283 scopus 로고    scopus 로고
    • Long-lived Min mice develop advanced intestinal cancers through a genetically conservative pathway
    • Halberg RB, et al. (2009) Long-lived Min mice develop advanced intestinal cancers through a genetically conservative pathway. Cancer Res 69:5768-5775.
    • (2009) Cancer Res , vol.69 , pp. 5768-5775
    • Halberg, R.B.1
  • 41
    • 38449123547 scopus 로고    scopus 로고
    • Role of Rho GTPases in breast cancer
    • DOI 10.2741/2718
    • Tang Y, Olufemi L, Wang MT, Nie D (2008) Role of Rho GTPases in breast cancer. Frontiers in Bioscience 13:759-776. (Pubitemid 351599780)
    • (2008) Frontiers in Bioscience , vol.13 , Issue.2 , pp. 759-776
    • Tang, Y.1    Olufemi, L.2    Wang, M.-T.3    Nie, D.4
  • 42
    • 48649095659 scopus 로고    scopus 로고
    • Translation regulatory factor RBM3 is a proto-oncogene that prevents mitotic catastrophe
    • Sureban SM, et al. (2008) Translation regulatory factor RBM3 is a proto-oncogene that prevents mitotic catastrophe. Oncogene 27:4544-4556.
    • (2008) Oncogene , vol.27 , pp. 4544-4556
    • Sureban, S.M.1
  • 43
    • 54749148733 scopus 로고    scopus 로고
    • One-hit effects in cancer: Altered proteome ofmorphologically normal colon crypts in familial adenomatous polyposis
    • Yeung AT, et al. (2008) One-hit effects in cancer: Altered proteome ofmorphologically normal colon crypts in familial adenomatous polyposis. Cancer Res 68:7579-7586.
    • (2008) Cancer Res , vol.68 , pp. 7579-7586
    • Yeung, A.T.1
  • 45
    • 54349101564 scopus 로고    scopus 로고
    • Optimizing identification and quantitation of 15N-labeled proteins in comparative proteomics
    • Gouw JW, Tops BB, Mortensen P, Heck AJ, Krijgsveld J (2008) Optimizing identification and quantitation of 15N-labeled proteins in comparative proteomics. Anal Chem 80:7796-7803.
    • (2008) Anal Chem , vol.80 , pp. 7796-7803
    • Gouw, J.W.1    Tops, B.B.2    Mortensen, P.3    Heck, A.J.4    Krijgsveld, J.5
  • 48
    • 33644524918 scopus 로고    scopus 로고
    • Mass spectrometry-based proteomics turns quantitative
    • Ong SE, Mann M (2005) Mass spectrometry-based proteomics turns quantitative. Nature Chemical Biology 1:252-262.
    • (2005) Nature Chemical Biology , vol.1 , pp. 252-262
    • Ong, S.E.1    Mann, M.2
  • 49
    • 66949116701 scopus 로고    scopus 로고
    • A human proteome detection and quantitation project
    • Anderson NL, et al. (2009) A human proteome detection and quantitation project. Molecular and Cellular Proteomics 8:883-886.
    • (2009) Molecular and Cellular Proteomics , vol.8 , pp. 883-886
    • Anderson, N.L.1
  • 50
    • 3242747629 scopus 로고    scopus 로고
    • Subtle modification of isotope ratio proteomics; an integrated strategy for expression proteomics
    • Whitelegge JP, et al. (2004) Subtle modification of isotope ratio proteomics; an integrated strategy for expression proteomics. Phytochemistry 65:1507-1515.
    • (2004) Phytochemistry , vol.65 , pp. 1507-1515
    • Whitelegge, J.P.1
  • 51
    • 34249650777 scopus 로고    scopus 로고
    • Comparison of full versus partial metabolic labeling for quantitative proteomics analysis in Arabidopsis thaliana
    • Huttlin EL, Hegeman AD, Harms AC, Sussman MR (2007) Comparison of full versus partial metabolic labeling for quantitative proteomics analysis in Arabidopsis thaliana. Molecular and Cellular Proteomics 6:860-881.
    • (2007) Molecular and Cellular Proteomics , vol.6 , pp. 860-881
    • Huttlin, E.L.1    Hegeman, A.D.2    Harms, A.C.3    Sussman, M.R.4
  • 52
    • 59849093889 scopus 로고    scopus 로고
    • Prediction of high-responding peptides for targeted protein assays by mass spectrometry
    • Fusaro VA, Mani DR, Mesirov JP, Carr SA (2009) Prediction of high-responding peptides for targeted protein assays by mass spectrometry. Nat Biotechnol 27:190-198.
    • (2009) Nat Biotechnol , vol.27 , pp. 190-198
    • Fusaro, V.A.1    Mani, D.R.2    Mesirov, J.P.3    Carr, S.A.4
  • 54
    • 67049132416 scopus 로고    scopus 로고
    • Expediting the development of targeted SRM assays: Using data from shotgun proteomics to automate method development
    • Prakash A, et al. (2009) Expediting the development of targeted SRM assays: Using data from shotgun proteomics to automate method development. J Proteome Res 8:2733-2739.
    • (2009) J Proteome Res , vol.8 , pp. 2733-2739
    • Prakash, A.1
  • 56
    • 38349068918 scopus 로고    scopus 로고
    • Quantitative, multiplexed assays for low abundance proteins in plasma by targeted mass spectrometry and stable isotope dilution
    • Keshishian H, Addona T, Burgess M, Kuhn E, Carr SA (2007) Quantitative, multiplexed assays for low abundance proteins in plasma by targeted mass spectrometry and stable isotope dilution. Molecular and Cellular Proteomics 6:2212-2229.
    • (2007) Molecular and Cellular Proteomics , vol.6 , pp. 2212-2229
    • Keshishian, H.1    Addona, T.2    Burgess, M.3    Kuhn, E.4    Carr, S.A.5
  • 58
    • 21644440953 scopus 로고    scopus 로고
    • Min/+ mouse model of colon cancer: Gene expression profiling in tumors
    • DOI 10.1002/jcb.20236
    • Leclerc D, Deng L, Trasler J, Rozen R (2004) ApcMin/+ mouse model of colon cancer: Gene expression profiling in tumors. J Cell Biochem 93:1242-1254. (Pubitemid 44264136)
    • (2004) Journal of Cellular Biochemistry , vol.93 , Issue.6 , pp. 1242-1254
    • Leclerc, D.1    Deng, L.2    Trasler, J.3    Rozen, R.4
  • 59
    • 68349105689 scopus 로고    scopus 로고
    • Comprehensive proteome analysis of an Apc mouse model uncovers proteins associated with intestinal tumorigenesis
    • Hung KE, et al. (2009) Comprehensive proteome analysis of an Apc mouse model uncovers proteins associated with intestinal tumorigenesis. Cancer Prevention Research 2:224-233.
    • (2009) Cancer Prevention Research , vol.2 , pp. 224-233
    • Hung, K.E.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.