-
1
-
-
0031010107
-
The kinetics of protein-protein recognition
-
Janin, J. (1997) The kinetics of protein-protein recognition Proteins: Struct., Funct., Genet. 28, 153-161
-
(1997)
Proteins: Struct., Funct., Genet.
, vol.28
, pp. 153-161
-
-
Janin, J.1
-
2
-
-
43149092276
-
Principles of protein-protein interactions: What are the preferred ways for proteins to interact?
-
Keskin, O., Gursoy, A., Ma, B., and Nussinov, R. (2008) Principles of protein-protein interactions: What are the preferred ways for proteins to interact? Chem. Rev. 108, 1225-1244
-
(2008)
Chem. Rev.
, vol.108
, pp. 1225-1244
-
-
Keskin, O.1
Gursoy, A.2
Ma, B.3
Nussinov, R.4
-
3
-
-
23044496736
-
Protein-protein interactions in human disease
-
Ryan, D. P. and Matthews, J. M. (2005) Protein-protein interactions in human disease Curr. Opin. Struct. Biol. 15, 441-446
-
(2005)
Curr. Opin. Struct. Biol.
, vol.15
, pp. 441-446
-
-
Ryan, D.P.1
Matthews, J.M.2
-
10
-
-
84868126820
-
Dynamic Docking (DD)
-
In (Roberts, G. C. Ed.) Springer, New York.
-
Nocek, J. M. and Hoffman, B. M. (2010) Dynamic Docking (DD). In Encyclopedia of Biophysics (Roberts, G. C., Ed.) Springer, New York.
-
(2010)
Encyclopedia of Biophysics
-
-
Nocek, J.M.1
Hoffman, B.M.2
-
14
-
-
0037195144
-
A simple physical model for binding energy hot spots in protein-protein complexes
-
Kortemme, T. and Baker, D. (2002) A simple physical model for binding energy hot spots in protein-protein complexes Proc. Natl. Acad. Sci. U.S.A. 99, 14116-14121
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 14116-14121
-
-
Kortemme, T.1
Baker, D.2
-
15
-
-
3242879771
-
Computational alanine scanning of protein-protein interfaces
-
Kortemme, T., Kim, D. E., and Baker, D. (2004) Computational alanine scanning of protein-protein interfaces Sci. STKE 2004, l2
-
(2004)
Sci. STKE
, vol.2004
, pp. 2
-
-
Kortemme, T.1
Kim, D.E.2
Baker, D.3
-
16
-
-
0029056922
-
Energetics of protein-protein interactions: Analysis of the barnase-barstar interface by single mutations and double mutant cycles
-
Schreiber, G. and Fersht, A. R. (1995) Energetics of protein-protein interactions: Analysis of the barnase-barstar interface by single mutations and double mutant cycles J. Mol. Biol. 248, 478-486
-
(1995)
J. Mol. Biol.
, vol.248
, pp. 478-486
-
-
Schreiber, G.1
Fersht, A.R.2
-
17
-
-
23044445176
-
Exploring the charge space of protein-protein association: A proteomic study
-
Shaul, Y. and Schreiber, G. (2005) Exploring the charge space of protein-protein association: A proteomic study Proteins: Struct., Funct., Bioinf. 60, 341-352
-
(2005)
Proteins: Struct., Funct., Bioinf.
, vol.60
, pp. 341-352
-
-
Shaul, Y.1
Schreiber, G.2
-
19
-
-
0035942974
-
2 and the Photosynthetic Reaction Center from Rhodobacter sphaeroides: Effects of Charge-Modifying Mutations on Binding and Electron Transfer
-
2 and the Photosynthetic Reaction Center from Rhodobacter sphaeroides: Effects of Charge-Modifying Mutations on Binding and Electron Transfer Biochemistry 40, 8452-8462
-
(2001)
Biochemistry
, vol.40
, pp. 8452-8462
-
-
Tetreault, M.1
Rongey, S.H.2
Feher, G.3
Okamura, M.Y.4
-
20
-
-
0346850581
-
2 and photosynthetic reaction center from Rhodobacter sphaeroides: Changes in binding affinity and electron transfer rate due to mutation of interfacial hydrophobic residues are strongly correlated
-
2 and photosynthetic reaction center from Rhodobacter sphaeroides: Changes in binding affinity and electron transfer rate due to mutation of interfacial hydrophobic residues are strongly correlated Biochemistry 42, 14492-14500
-
(2003)
Biochemistry
, vol.42
, pp. 14492-14500
-
-
Gong, X.-M.1
Paddock, M.L.2
Okamura, M.Y.3
-
23
-
-
84859326699
-
Dynamics in transient complexes of redox proteins
-
Ubbink, M. (2012) Dynamics in transient complexes of redox proteins Biochem. Soc. Trans. 40, 415-418
-
(2012)
Biochem. Soc. Trans.
, vol.40
, pp. 415-418
-
-
Ubbink, M.1
-
25
-
-
0021476470
-
Calculations of electrostatic interactions in biological systems and in solutions
-
Warshel, A. and Russell, S. T. (1984) Calculations of electrostatic interactions in biological systems and in solutions Q. Rev. Biophys. 17, 283-422
-
(1984)
Q. Rev. Biophys.
, vol.17
, pp. 283-422
-
-
Warshel, A.1
Russell, S.T.2
-
26
-
-
0025283002
-
Electrostatic Interactions in Macromolecules: Theory and Applications
-
Sharp, K. A. and Honig, B. (1990) Electrostatic Interactions in Macromolecules: Theory and Applications Annu. Rev. Biophys. Biophys. Chem. 19, 301-332
-
(1990)
Annu. Rev. Biophys. Biophys. Chem.
, vol.19
, pp. 301-332
-
-
Sharp, K.A.1
Honig, B.2
-
27
-
-
0029016182
-
Classical Electrostatics in Biology and Chemistry
-
Honig, B. and Nicholls, A. (1995) Classical Electrostatics in Biology and Chemistry Science 268, 1144-1149
-
(1995)
Science
, vol.268
, pp. 1144-1149
-
-
Honig, B.1
Nicholls, A.2
-
28
-
-
36549102274
-
Brownian dynamics simulation of diffusion-influenced bimolecular reactions
-
Northrup, S. H., Allison, S. A., and McCammon, J. A. (1984) Brownian dynamics simulation of diffusion-influenced bimolecular reactions J. Chem. Phys. 80, 1517-1524
-
(1984)
J. Chem. Phys.
, vol.80
, pp. 1517-1524
-
-
Northrup, S.H.1
Allison, S.A.2
McCammon, J.A.3
-
29
-
-
0027243893
-
Electron-Transfer Kinetics and Electrostatic Properties of the Rhodobacter sphaeroides Reaction Center and Soluble c -Cytochromes
-
Tiede, D. M., Vashishta, A., and Gunner, M. R. (1993) Electron-Transfer Kinetics and Electrostatic Properties of the Rhodobacter sphaeroides Reaction Center and Soluble c -Cytochromes Biochemistry 32, 4515-4531
-
(1993)
Biochemistry
, vol.32
, pp. 4515-4531
-
-
Tiede, D.M.1
Vashishta, A.2
Gunner, M.R.3
-
30
-
-
0001337688
-
Electron-Tunneling Paths in Various Electrostatic Complexes between Cytochrome c and Plastocyanin. Anisotropy of the Copper-Ligand Interactions and Dependence of the Iron-Copper Electronic Coupling on the Metalloprotein Orientation
-
Ullmann, G. M. and Kostic, N. M. (1995) Electron-Tunneling Paths in Various Electrostatic Complexes between Cytochrome c and Plastocyanin. Anisotropy of the Copper-Ligand Interactions and Dependence of the Iron-Copper Electronic Coupling on the Metalloprotein Orientation J. Am. Chem. Soc. 117, 4766-4774
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 4766-4774
-
-
Ullmann, G.M.1
Kostic, N.M.2
-
31
-
-
21644476468
-
PatchDock and SymmDock: Servers for rigid and symmetric docking
-
Schneidman-Duhovny, D., Inbar, Y., Nussinov, R., and Wolfson, H. J. (2005) PatchDock and SymmDock: Servers for rigid and symmetric docking Nucleic Acids Res. 33, W363-W367
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Schneidman-Duhovny, D.1
Inbar, Y.2
Nussinov, R.3
Wolfson, H.J.4
-
32
-
-
0003651195
-
-
2nd ed. Prentice-Hall, Inc. Upper Saddle River, NJ.
-
Steinfeld, J. I., Francisco, J. S., and Hase, W. L. (1999) Chemical Kinetics and Dynamics, 2nd ed., Prentice-Hall, Inc., Upper Saddle River, NJ.
-
(1999)
Chemical Kinetics and Dynamics
-
-
Steinfeld, J.I.1
Francisco, J.S.2
Hase, W.L.3
-
34
-
-
0003516749
-
-
3rd ed. W. H. Freeman and Co. New York.
-
Atkins, P. W. (1986) Physical Chemistry, 3rd ed., W. H. Freeman and Co., New York.
-
(1986)
Physical Chemistry
-
-
Atkins, P.W.1
-
35
-
-
0025740587
-
Expression in Escherichia coli of a synthetic gene coding for horse heart myoglobin
-
Guillemette, J. G., Matsushima-Hibiya, Y., Atkinson, T., and Smith, M. (1991) Expression in Escherichia coli of a synthetic gene coding for horse heart myoglobin Protein Eng. 4, 585-592
-
(1991)
Protein Eng.
, vol.4
, pp. 585-592
-
-
Guillemette, J.G.1
Matsushima-Hibiya, Y.2
Atkinson, T.3
Smith, M.4
-
36
-
-
0037358773
-
Fast purification of the apo form and of a non-binding heme mutant of recombinant sperm whale myoglobin
-
Ribeiro, E. A., Jr., Regis, W. C. B., Tasic, L., and Ramos, C. H. I. (2003) Fast purification of the apo form and of a non-binding heme mutant of recombinant sperm whale myoglobin Protein Expression Purif. 28, 202-208
-
(2003)
Protein Expression Purif.
, vol.28
, pp. 202-208
-
-
Ribeiro Jr., E.A.1
Regis, W.C.B.2
Tasic, L.3
Ramos, C.H.I.4
-
39
-
-
0025335197
-
5 oxidation-reduction equilibrium: Involvement of asparagine-57, serine-64, and heme propionate-7
-
5 oxidation-reduction equilibrium: Involvement of asparagine-57, serine-64, and heme propionate-7 Biochemistry 29, 5500-5508
-
(1990)
Biochemistry
, vol.29
, pp. 5500-5508
-
-
Funk, W.D.1
Lo, T.P.2
Mauk, M.R.3
Brayer, G.D.4
MacGillivray, R.T.A.5
Mauk, A.G.6
-
40
-
-
33947468892
-
Theory of protein titration curves. I. General equations for impenetrable spheres
-
Tanford, C. and Kirkwood, J. G. (1957) Theory of protein titration curves. I. General equations for impenetrable spheres J. Am. Chem. Soc. 79, 5333-5339
-
(1957)
J. Am. Chem. Soc.
, vol.79
, pp. 5333-5339
-
-
Tanford, C.1
Kirkwood, J.G.2
-
41
-
-
0027326313
-
5
-
5 Biochemistry 32, 6613-6623
-
(1993)
Biochemistry
, vol.32
, pp. 6613-6623
-
-
Northrup, S.H.1
Thomasson, K.A.2
Miller, C.M.3
Barker, P.D.4
Eltis, L.D.5
Guillemette, J.G.6
Inglis, S.C.7
Mauk, A.G.8
-
42
-
-
0033862774
-
Salt effects on ionization equilibria of histidines in myoglobin
-
Kao, Y. H., Fitch, C. A., Bhattacharya, S., Sarkisian, C. J., Lecomte, J. T. J., and Garcia-Moreno, B. (2000) Salt effects on ionization equilibria of histidines in myoglobin Biophys. J. 79, 1637-1654
-
(2000)
Biophys. J.
, vol.79
, pp. 1637-1654
-
-
Kao, Y.H.1
Fitch, C.A.2
Bhattacharya, S.3
Sarkisian, C.J.4
Lecomte, J.T.J.5
Garcia-Moreno, B.6
-
43
-
-
0030865458
-
Temperature dependence of histidine ionization constants in myoglobin
-
Bhattacharya, S. and Lecomte, J. T. J. (1997) Temperature dependence of histidine ionization constants in myoglobin Biophys. J. 73, 3241-3256
-
(1997)
Biophys. J.
, vol.73
, pp. 3241-3256
-
-
Bhattacharya, S.1
Lecomte, J.T.J.2
-
45
-
-
20144370426
-
Differential Influence of Dynamic Processes on Forward and Reverse Electron Transfer Across a Protein-Protein Interface
-
Hoffman, B. M., Celis, L. M., Cull, D. A., Patel, A. D., Seifert, J. L., Wheeler, K. E., Wang, J., Yao, J., Kurnikov, I. V., and Nocek, J. (2005) Differential Influence of Dynamic Processes on Forward and Reverse Electron Transfer Across a Protein-Protein Interface Proc. Natl. Acad. Sci. U.S.A. 102, 3564-3569
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 3564-3569
-
-
Hoffman, B.M.1
Celis, L.M.2
Cull, D.A.3
Patel, A.D.4
Seifert, J.L.5
Wheeler, K.E.6
Wang, J.7
Yao, J.8
Kurnikov, I.V.9
Nocek, J.10
-
47
-
-
65249099497
-
Fundamental Aspects of Protein-Protein Association Kinetics
-
Schreiber, G., Haran, G., and Zhou, H.-X. (2009) Fundamental Aspects of Protein-Protein Association Kinetics Chem. Rev. 109, 839-860
-
(2009)
Chem. Rev.
, vol.109
, pp. 839-860
-
-
Schreiber, G.1
Haran, G.2
Zhou, H.-X.3
-
48
-
-
0021115292
-
The ionic strength dependence of the rate of a reaction between two large proteins with a dipole moment
-
Van Leeuwen, J. W. (1983) The ionic strength dependence of the rate of a reaction between two large proteins with a dipole moment Biochim. Biophys. Acta 743, 408-421
-
(1983)
Biochim. Biophys. Acta
, vol.743
, pp. 408-421
-
-
Van Leeuwen, J.W.1
-
49
-
-
0026795821
-
Photoinduced Electron-Transfer Reaction in a Ternary System Involving Zinc Cytochrome c and Plastocyanin. Interplay of Monopolar and Dipolar Electrostatic Interactions between Metalloproteins
-
Zhou, J. S. and Kostic, N. M. (1992) Photoinduced Electron-Transfer Reaction in a Ternary System Involving Zinc Cytochrome c and Plastocyanin. Interplay of Monopolar and Dipolar Electrostatic Interactions between Metalloproteins Biochemistry 31, 7543-7550
-
(1992)
Biochemistry
, vol.31
, pp. 7543-7550
-
-
Zhou, J.S.1
Kostic, N.M.2
-
51
-
-
0037134819
-
5
-
5 J. Am. Chem. Soc. 124, 6849-6859
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 6849-6859
-
-
Liang, Z.-X.1
Nocek, J.2
Huang, K.3
Hayes, R.T.4
Kurnikov, I.V.5
Beratan, D.N.6
Hoffman, B.M.7
-
52
-
-
81055156035
-
as, redox, and other crucial functional properties
-
as, redox, and other crucial functional properties Proteins: Struct., Funct., Bioinf. 79, 3469-3484
-
(2011)
Proteins: Struct., Funct., Bioinf.
, vol.79
, pp. 3469-3484
-
-
Warshel, A.1
Dryga, A.2
-
53
-
-
33749189483
-
Factors influencing the energetics of electron and proton transfers in proteins. What can be learned from calculations?
-
Gunner, M. R., Mao, J., Song, Y., and Kim, J. (2006) Factors influencing the energetics of electron and proton transfers in proteins. What can be learned from calculations? Biochim. Biophys. Acta 1757, 942-968
-
(2006)
Biochim. Biophys. Acta
, vol.1757
, pp. 942-968
-
-
Gunner, M.R.1
Mao, J.2
Song, Y.3
Kim, J.4
-
54
-
-
0019888288
-
Definition of cytochrome c binding domains by chemical modification. Interaction of horse cytochrome c with beef sulfite oxidase and analysis of steady state kinetics
-
Speck, S. H., Koppenol, W. H., Dethmers, J. K., Osheroff, N., Margoliash, E., and Rajagopalan, K. V. (1981) Definition of cytochrome c binding domains by chemical modification. Interaction of horse cytochrome c with beef sulfite oxidase and analysis of steady state kinetics J. Biol. Chem. 256, 7394-7400
-
(1981)
J. Biol. Chem.
, vol.256
, pp. 7394-7400
-
-
Speck, S.H.1
Koppenol, W.H.2
Dethmers, J.K.3
Osheroff, N.4
Margoliash, E.5
Rajagopalan, K.V.6
-
55
-
-
0020490571
-
The Asymmetric Distribution of Charges on the Surface of Horse Cytochrome c. Functional Implications
-
Koppenol, W. H. and Margoliash, E. (1982) The Asymmetric Distribution of Charges on the Surface of Horse Cytochrome c. Functional Implications J. Biol. Chem. 257, 4426-4437
-
(1982)
J. Biol. Chem.
, vol.257
, pp. 4426-4437
-
-
Koppenol, W.H.1
Margoliash, E.2
-
56
-
-
0018400889
-
Definition of cytochrome c binding domains by chemical modification. 5. Kinetics of reaction with beef mitochondrial reductase and functional organization of the respiratory chain
-
Speck, S. H., Ferguson-Miller, S., Osheroff, N., and Margoliash, E. (1979) Definition of cytochrome c binding domains by chemical modification. 5. Kinetics of reaction with beef mitochondrial reductase and functional organization of the respiratory chain Proc. Natl. Acad. Sci. U.S.A. 76, 155-159
-
(1979)
Proc. Natl. Acad. Sci. U.S.A.
, vol.76
, pp. 155-159
-
-
Speck, S.H.1
Ferguson-Miller, S.2
Osheroff, N.3
Margoliash, E.4
-
57
-
-
0001646245
-
Guided by electrostatics, a textbook protein comes of age
-
Margoliash, E. and Bosshard, H. R. (1983) Guided by electrostatics, a textbook protein comes of age Trends Biochem. Sci. 8, 316-320
-
(1983)
Trends Biochem. Sci.
, vol.8
, pp. 316-320
-
-
Margoliash, E.1
Bosshard, H.R.2
-
58
-
-
0036468995
-
Kinetic studies of protein-protein interactions
-
Schreiber, G. (2002) Kinetic studies of protein-protein interactions Curr. Opin. Struct. Biol. 12, 41-47
-
(2002)
Curr. Opin. Struct. Biol.
, vol.12
, pp. 41-47
-
-
Schreiber, G.1
-
59
-
-
33646005543
-
Diffusional encounter of barnase and barstar
-
Spaar, A., Dammer, C., Gabdoulline, R. R., Wade, R. C., and Helms, V. (2006) Diffusional encounter of barnase and barstar Biophys. J. 90, 1913-1924
-
(2006)
Biophys. J.
, vol.90
, pp. 1913-1924
-
-
Spaar, A.1
Dammer, C.2
Gabdoulline, R.R.3
Wade, R.C.4
Helms, V.5
-
61
-
-
40549134985
-
Electrostatic rate enhancement and transient complex of protein-protein association
-
Alsallaq, R. and Zhou, H.-X. (2008) Electrostatic rate enhancement and transient complex of protein-protein association Proteins: Struct., Funct., Bioinf. 71, 320-335
-
(2008)
Proteins: Struct., Funct., Bioinf.
, vol.71
, pp. 320-335
-
-
Alsallaq, R.1
Zhou, H.-X.2
|