-
1
-
-
0033167137
-
On the protein-protein diffusional encounter complex
-
Gabdoulline, R. R., and R. C. Wade. 1999. On the protein-protein diffusional encounter complex. J. Mol. Recognit. 12:226-234.
-
(1999)
J. Mol. Recognit.
, vol.12
, pp. 226-234
-
-
Gabdoulline, R.R.1
Wade, R.C.2
-
2
-
-
0036468995
-
Kinetic studies of protein-protein interactions
-
Schreiber, G. 2002. Kinetic studies of protein-protein interactions. Curr. Opin. Struct. Biol. 12:41-47.
-
(2002)
Curr. Opin. Struct. Biol.
, vol.12
, pp. 41-47
-
-
Schreiber, G.1
-
3
-
-
0035830963
-
Protein-protein association: Investigation of factors influencing association rates by Brownian Dynamics simulation
-
Gabdoulline, R. R., and R. C. Wade. 2001. Protein-protein association: investigation of factors influencing association rates by Brownian Dynamics simulation. J. Mol. Biol. 306:1139-1155.
-
(2001)
J. Mol. Biol.
, vol.306
, pp. 1139-1155
-
-
Gabdoulline, R.R.1
Wade, R.C.2
-
4
-
-
0029873697
-
Rapid, electrostatically assisted association of proteins
-
Schreiber, G., and A. R. Fersht. 1996. Rapid, electrostatically assisted association of proteins. Nat. Struct. Biol. 3:427-431.
-
(1996)
Nat. Struct. Biol.
, vol.3
, pp. 427-431
-
-
Schreiber, G.1
Fersht, A.R.2
-
5
-
-
0029056922
-
Energetics of protein-protein interactions: Analysis of the barnase-barstar interface by single mutations and double mutant cycles
-
Schreiber, G., and A. R. Fersht. 1995. Energetics of protein-protein interactions: analysis of the barnase-barstar interface by single mutations and double mutant cycles. J. Mol. Biol. 248:478-486.
-
(1995)
J. Mol. Biol.
, vol.248
, pp. 478-486
-
-
Schreiber, G.1
Fersht, A.R.2
-
6
-
-
0028074974
-
Protein-protein recognition: Crystal structural analysis of a barnase-barstar complex at 2.0-Å resolution
-
Buckle, A. M., G. Schreiber, and A. R. Fersht. 1994. Protein-protein recognition: crystal structural analysis of a barnase-barstar complex at 2.0-Å resolution. Biochemistry. 33:8878-8889.
-
(1994)
Biochemistry
, vol.33
, pp. 8878-8889
-
-
Buckle, A.M.1
Schreiber, G.2
Fersht, A.R.3
-
7
-
-
0033605858
-
Predicting the rate enhancement of protein complex formation from the electrostatic energy of interaction
-
Selzer, T., and G. Schreiber. 1999. Predicting the rate enhancement of protein complex formation from the electrostatic energy of interaction. J. Mol. Biol. 287:409-419.
-
(1999)
J. Mol. Biol.
, vol.287
, pp. 409-419
-
-
Selzer, T.1
Schreiber, G.2
-
8
-
-
0032557503
-
Electrostatic enhancement of diffusion-controlled protein-protein association: Comparison of theory and experiment on barnase and barstar
-
Vijayakumar, M., K. Y. Wong, G. Schreiber, A. R. Fersht, A. Szabo, and H. Z. Zhou. 1998. Electrostatic enhancement of diffusion-controlled protein-protein association: comparison of theory and experiment on barnase and barstar. J. Mol. Biol. 278:1015-1024.
-
(1998)
J. Mol. Biol.
, vol.278
, pp. 1015-1024
-
-
Vijayakumar, M.1
Wong, K.Y.2
Schreiber, G.3
Fersht, A.R.4
Szabo, A.5
Zhou, H.Z.6
-
9
-
-
0030891436
-
Simulation of the diffusional association of barnase and barstar
-
Gabdoulline, R. R., and R. C. Wade. 1997. Simulation of the diffusional association of barnase and barstar. Biophys. J. 72:1917-1929.
-
(1997)
Biophys. J.
, vol.72
, pp. 1917-1929
-
-
Gabdoulline, R.R.1
Wade, R.C.2
-
10
-
-
4444301075
-
How optimal are the binding energetics of barnase and barstar
-
Wang, T., S. Tomic, R. R. Gabdoulline, and R. C. Wade. 2004. How optimal are the binding energetics of barnase and barstar. Biophys. J. 87:1618-1630.
-
(2004)
Biophys. J.
, vol.87
, pp. 1618-1630
-
-
Wang, T.1
Tomic, S.2
Gabdoulline, R.R.3
Wade, R.C.4
-
11
-
-
0032981961
-
Free energy landscapes of encounter complexes in protein-protein association
-
Camacho, C. J., Z. Weng, S. Vajda, and C. DeLisi. 1999. Free energy landscapes of encounter complexes in protein-protein association. Biophys. J. 76:1166-1178.
-
(1999)
Biophys. J.
, vol.76
, pp. 1166-1178
-
-
Camacho, C.J.1
Weng, Z.2
Vajda, S.3
DeLisi, C.4
-
12
-
-
0003187567
-
The atomic structure of protein-protein recognition sites
-
Conte, L. L., C. Chothia, and J. Janin. 1999. The atomic structure of protein-protein recognition sites. J. Mol. Biol. 285:2177-2198.
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 2177-2198
-
-
Conte, L.L.1
Chothia, C.2
Janin, J.3
-
13
-
-
0038650855
-
Comparison of calculation and experiment implicates significant electrostatic contributions to the binding stability of barnase and barstar
-
Dong, F., M. Vaijayakumar, and H.-X. Zhou. 2003. Comparison of calculation and experiment implicates significant electrostatic contributions to the binding stability of barnase and barstar. Biophys. J. 85:49-60.
-
(2003)
Biophys. J.
, vol.85
, pp. 49-60
-
-
Dong, F.1
Vaijayakumar, M.2
Zhou, H.-X.3
-
14
-
-
0026723477
-
Effect of active site residues in barnase on activity and stability
-
Meiering, E. M., L. Serrano, and A. R. Fersht. 1992. Effect of active site residues in barnase on activity and stability. J. Mol. Biol. 225:585-589.
-
(1992)
J. Mol. Biol.
, vol.225
, pp. 585-589
-
-
Meiering, E.M.1
Serrano, L.2
Fersht, A.R.3
-
15
-
-
33646200644
-
Free energy landscape of proteinprotein encounter resulting from Brownian Dynamics simulations of barnase:barstar
-
Spaar, A., and V. Helms. 2005. Free energy landscape of proteinprotein encounter resulting from Brownian Dynamics simulations of barnase:barstar. J. Chem. Theory Comput. 1:723-736.
-
(2005)
J. Chem. Theory Comput.
, vol.1
, pp. 723-736
-
-
Spaar, A.1
Helms, V.2
-
16
-
-
0037346726
-
The physics and bioinformatics of binding and folding-an energy landscape perspective
-
Papoian, G. A., and P. G. Wolynes. 2003. The physics and bioinformatics of binding and folding-an energy landscape perspective. Biopolymers. 68:333-349.
-
(2003)
Biopolymers
, vol.68
, pp. 333-349
-
-
Papoian, G.A.1
Wolynes, P.G.2
-
17
-
-
0033056708
-
Folding funnels, binding funnels, and protein function
-
Tsai, C.-J., S. Kumar, B. Ma, and R. Nussinov. 1999. Folding funnels, binding funnels, and protein function. Protein Sci. 8:1181-1190.
-
(1999)
Protein Sci.
, vol.8
, pp. 1181-1190
-
-
Tsai, C.-J.1
Kumar, S.2
Ma, B.3
Nussinov, R.4
-
18
-
-
9244244155
-
Transition state and encounter complex for fast association of cytochrome c2 with bacterial reaction center
-
Miyashita, O., J. N. Onuchic, and M. Y. Okamura. 2004. Transition state and encounter complex for fast association of cytochrome c2 with bacterial reaction center. Proc. Natl. Acad. Sci. USA. 101:16174-16179.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 16174-16179
-
-
Miyashita, O.1
Onuchic, J.N.2
Okamura, M.Y.3
-
19
-
-
84986512474
-
CHARMM: A program for macromolecular energy, minimization, and dynamics calculations
-
Brooks, B. R., R. E. Bruccoleri, B. D. Olafson, D. J. States, S. Swaminathan, and M. Karplus. 1983. CHARMM: a program for macromolecular energy, minimization, and dynamics calculations. J. Comput. Chem. 4:187-217.
-
(1983)
J. Comput. Chem.
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
Karplus, M.6
-
20
-
-
85030607462
-
-
Reference deleted in proof
-
Reference deleted in proof.
-
-
-
-
21
-
-
0026124585
-
Electrostatic and diffusion of molecules in solution: Simulations with the University-of-Houston-Brownian Dynamics program
-
Davis, M. E., J. D. Madura, B. A. Luty, and J. A. McCammon. 1991. Electrostatic and diffusion of molecules in solution: simulations with the University-of-Houston-Brownian Dynamics program. Comput. Phys. Commun. 62:187-197.
-
(1991)
Comput. Phys. Commun.
, vol.62
, pp. 187-197
-
-
Davis, M.E.1
Madura, J.D.2
Luty, B.A.3
McCammon, J.A.4
-
22
-
-
33645941402
-
The OPLS potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin
-
Jorgensen, W. L., and J. Tirado-Rives. 1988. The OPLS potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin. J. Am. Chem. Soc. 110:1657-1666.
-
(1988)
J. Am. Chem. Soc.
, vol.110
, pp. 1657-1666
-
-
Jorgensen, W.L.1
Tirado-Rives, J.2
-
23
-
-
33748501925
-
Effective charges for macromolecules in solvent
-
Gabdoulline, R. R., and R. C. Wade. 1996. Effective charges for macromolecules in solvent. J. Phys. Chem. 100:3868-3878.
-
(1996)
J. Phys. Chem.
, vol.100
, pp. 3868-3878
-
-
Gabdoulline, R.R.1
Wade, R.C.2
-
24
-
-
33845282908
-
Electrostatic effects in the Brownian dynamics of association and orientation of heme proteins
-
Northrup, S. H., J. O. Boles, and J. C. L. Reynolds. 1987. Electrostatic effects in the Brownian dynamics of association and orientation of heme proteins. J. Phys. Chem. 91:5991-5998.
-
(1987)
J. Phys. Chem.
, vol.91
, pp. 5991-5998
-
-
Northrup, S.H.1
Boles, J.O.2
Reynolds, J.C.L.3
-
25
-
-
0344500752
-
Computer simulation of protein-protein association kinetics: Acetylcholinesterase-fasciculin
-
Elcock, A. H., R. R. Gabdoulline, R. C. Wade, and J. A. McCammon. 1999. Computer simulation of protein-protein association kinetics: acetylcholinesterase-fasciculin. J. Mol. Biol. 291:149-162.
-
(1999)
J. Mol. Biol.
, vol.291
, pp. 149-162
-
-
Elcock, A.H.1
Gabdoulline, R.R.2
Wade, R.C.3
McCammon, J.A.4
-
26
-
-
0031714012
-
Brownian dynamics simulation of protein-protein diffusional encounter
-
Gabdoulline, R. R., and R. C. Wade. 1998. Brownian dynamics simulation of protein-protein diffusional encounter. Methods. 14:329-341.
-
(1998)
Methods
, vol.14
, pp. 329-341
-
-
Gabdoulline, R.R.1
Wade, R.C.2
-
27
-
-
33750652614
-
Brownian dynamics with hydrodynamic interactions
-
Ermak, D. L., and J. A. McCammon. 1978. Brownian dynamics with hydrodynamic interactions. J. Chem. Phys. 69:1352-1360.
-
(1978)
J. Chem. Phys.
, vol.69
, pp. 1352-1360
-
-
Ermak, D.L.1
McCammon, J.A.2
-
28
-
-
0030030147
-
Orientational steering in enzyme-substrate association: Ionic strength dependence of hydrodynamic torque effects
-
Antosiewicz, J., J. M. Briggs, and J. A. McCammon. 1996. Orientational steering in enzyme-substrate association: ionic strength dependence of hydrodynamic torque effects. Eur. Biophys. J. 24:137-141.
-
(1996)
Eur. Biophys. J.
, vol.24
, pp. 137-141
-
-
Antosiewicz, J.1
Briggs, J.M.2
McCammon, J.A.3
-
29
-
-
3142735054
-
Brownian Dynamics simulations of simplified cytochrome c molecules in the presence of a charged surface
-
Gorba, C., T. Geyer, and V. Helms. 2004. Brownian Dynamics simulations of simplified cytochrome c molecules in the presence of a charged surface. J. Chem. Phys. 121:457-464.
-
(2004)
J. Chem. Phys.
, vol.121
, pp. 457-464
-
-
Gorba, C.1
Geyer, T.2
Helms, V.3
-
30
-
-
3042814575
-
A Brownian Dynamics study: The effect of a membrane environment on an electron transfer system
-
Flöck, D., and V. Helms. 2004. A Brownian Dynamics study: the effect of a membrane environment on an electron transfer system. Biophys. J. 87:65-74.
-
(2004)
Biophys. J.
, vol.87
, pp. 65-74
-
-
Flöck, D.1
Helms, V.2
-
31
-
-
0001229341
-
Calculation of hydrodynamic properties of globular proteins from their atomic-level structure
-
de la Torre, J. G., M. L. Huertas, and B. Carrasco. 2000. Calculation of hydrodynamic properties of globular proteins from their atomic-level structure. Biophys. J. 78:719-730.
-
(2000)
Biophys. J.
, vol.78
, pp. 719-730
-
-
De La Torre, J.G.1
Huertas, M.L.2
Carrasco, B.3
-
32
-
-
0036923838
-
Brownian Dynamics simulation of rigid particles of arbitrary shape in external fields
-
Fernandes, M. X., and J. G. de la Torre. 2002. Brownian Dynamics simulation of rigid particles of arbitrary shape in external fields. Biophys. J. 83:3039-3048.
-
(2002)
Biophys. J.
, vol.83
, pp. 3039-3048
-
-
Fernandes, M.X.1
De La Torre, J.G.2
|