-
3
-
-
0027326313
-
-
Northrup, S. H.; Thomasson, K. A.; Miller, C. M.; Barker, P. D.; Eltis, L. D.; Guillemette, J. G.; Inglis, S. C.; Mauk, A. G. Biochemistry 1993, 32, 6613-6623.
-
(1993)
Biochemistry
, vol.32
, pp. 6613-6623
-
-
Northrup, S.H.1
Thomasson, K.A.2
Miller, C.M.3
Barker, P.D.4
Eltis, L.D.5
Guillemette, J.G.6
Inglis, S.C.7
Mauk, A.G.8
-
4
-
-
0001102428
-
-
Nocek, J. M.; Zhou, J. S.; De Forest, S.; Priyadarshy, S.; Beratan, D. N.; Onuchic, J. N.; Hoffman, B. M. Chem. Rev. 1996, 96, 2459-2489.
-
(1996)
Chem. Rev.
, vol.96
, pp. 2459-2489
-
-
Nocek, J.M.1
Zhou, J.S.2
De Forest, S.3
Priyadarshy, S.4
Beratan, D.N.5
Onuchic, J.N.6
Hoffman, B.M.7
-
6
-
-
0032508941
-
-
Naito, N.; Huang, H.; Sturgess, W.; Nocek, J. M.; Hoffman, B. M. J. Am. Chem. Soc. 1998, 120, 11256-11262.
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 11256-11262
-
-
Naito, N.1
Huang, H.2
Sturgess, W.3
Nocek, J.M.4
Hoffman, B.M.5
-
7
-
-
0030468363
-
-
Crnogorac, M. M.; Shen, C.; Young, S.; Hansson, Ö.; Kostic, N. M. Biochemistry 1996, 35, 16465-16474.
-
(1996)
Biochemistry
, vol.35
, pp. 16465-16474
-
-
Crnogorac, M.M.1
Shen, C.2
Young, S.3
Hansson, Ö.4
Kostic, N.M.5
-
8
-
-
0030932902
-
-
Nocek, J. M.; Sishta, B. P.; Cameron, J. C.; Mauk, A. G.; Hoffman, B. M. J. Am. Chem. Soc. 1997, 119, 2146-2155.
-
(1997)
J. Am. Chem. Soc.
, vol.119
, pp. 2146-2155
-
-
Nocek, J.M.1
Sishta, B.P.2
Cameron, J.C.3
Mauk, A.G.4
Hoffman, B.M.5
-
10
-
-
0032497926
-
-
Zhu, Z.; Cunane, L. M.; Chen, Z.-W.; Durley, R. C. E.; Mathews, F. S.; Davidson, V. L. Biochemistry 1998, 37, 17128-17136.
-
(1998)
Biochemistry
, vol.37
, pp. 17128-17136
-
-
Zhu, Z.1
Cunane, L.M.2
Chen, Z.-W.3
Durley, R.C.E.4
Mathews, F.S.5
Davidson, V.L.6
-
11
-
-
0000842554
-
-
Johnson, M. K., King, R. B., Kurtz, D. M., Jr., Kutal, C., Norton, M. L., Scott, R. A., Eds.; American Chemical Society: Washington, DC
-
Hoffman, B. M.; Ratner, M. A.; Wallin, S. A. In Advances in Chemistry Series; Johnson, M. K., King, R. B., Kurtz, D. M., Jr., Kutal, C., Norton, M. L., Scott, R. A., Eds.; American Chemical Society: Washington, DC, 1990; Vol. 226, pp 125-146.
-
(1990)
Advances in Chemistry Series
, vol.226
, pp. 125-146
-
-
Hoffman, B.M.1
Ratner, M.A.2
Wallin, S.A.3
-
13
-
-
0034673295
-
-
Pletneva, E. V.; Fulton, D. B.; Kohzuma, T.; Kostic, N. M. J. Am. Chem. Soc. 2000, 122, 1034-1046.
-
(2000)
J. Am. Chem. Soc.
, vol.122
, pp. 1034-1046
-
-
Pletneva, E.V.1
Fulton, D.B.2
Kohzuma, T.3
Kostic, N.M.4
-
14
-
-
0037134819
-
-
Liang, Z.-X.; Nocek, J.; Huang, K.; Hayes, R. T.; Kurnikov, I. V.; Beratan, D. N.; Hoffman, B. M. J. Am. Chem. Soc. 2002, 124, 6849-6859.
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 6849-6859
-
-
Liang, Z.-X.1
Nocek, J.2
Huang, K.3
Hayes, R.T.4
Kurnikov, I.V.5
Beratan, D.N.6
Hoffman, B.M.7
-
15
-
-
0034640035
-
-
Liang, Z.-X.; Nocek, J. M.; Kurnikov, I. V.; Beratan, D. N.; Hoffman, B. M. J. Am. Chem. Soc. 2000, 122, 3552-3553.
-
(2000)
J. Am. Chem. Soc.
, vol.122
, pp. 3552-3553
-
-
Liang, Z.-X.1
Nocek, J.M.2
Kurnikov, I.V.3
Beratan, D.N.4
Hoffman, B.M.5
-
16
-
-
0036937477
-
-
Liang, Z.-X.; Jiang, M.; Ning, Q.; Hoffman, B. M. JBIC, J. Biol. Inorg. Chem. 2002, 7, 580-588.
-
(2002)
JBIC, J. Biol. Inorg. Chem.
, vol.7
, pp. 580-588
-
-
Liang, Z.-X.1
Jiang, M.2
Ning, Q.3
Hoffman, B.M.4
-
17
-
-
0026434593
-
-
Beratan, D. N.; Betts, J. N.; Onuchic, J. N. Science 1991, 252, 1285-1288.
-
(1991)
Science
, vol.252
, pp. 1285-1288
-
-
Beratan, D.N.1
Betts, J.N.2
Onuchic, J.N.3
-
18
-
-
0025781740
-
-
Eltis, L. D.; Herbert, R. G.; Barker, P. D.; Mauk, A. G.; Northrup, S. H. Biochemistry 1991, 30, 3663-3674.
-
(1991)
Biochemistry
, vol.30
, pp. 3663-3674
-
-
Eltis, L.D.1
Herbert, R.G.2
Barker, P.D.3
Mauk, A.G.4
Northrup, S.H.5
-
20
-
-
0036771785
-
-
Worrall, J. A. R.; Liu, Y.; Crowley, P. B.; Nocek, J.; Hoffman, B. M.; Ubbink, M. Biochemistry 2002, 41, 11721-11730.
-
(2002)
Biochemistry
, vol.41
, pp. 11721-11730
-
-
Worrall, J.A.R.1
Liu, Y.2
Crowley, P.B.3
Nocek, J.4
Hoffman, B.M.5
Ubbink, M.6
-
21
-
-
0034212826
-
-
Palma, P. N.; Krippahl, L.; Wampler, J. E.; Moura, J. J. G. Proteins: Struct., Funct., Genet. 2000, 39, 372-384.
-
(2000)
Proteins: Struct., Funct., Genet.
, vol.39
, pp. 372-384
-
-
Palma, P.N.1
Krippahl, L.2
Wampler, J.E.3
Moura, J.J.G.4
-
22
-
-
0034646441
-
-
Morelli, X.; Dolla, A.; Czjzek, M.; Palma, P. N.; Blasco, F.; Krippahl, L.; Moura, J. J. G.; Guerlesquin, F. Biochemistry 2000, 39, 2530-2537.
-
(2000)
Biochemistry
, vol.39
, pp. 2530-2537
-
-
Morelli, X.1
Dolla, A.2
Czjzek, M.3
Palma, P.N.4
Blasco, F.5
Krippahl, L.6
Moura, J.J.G.7
Guerlesquin, F.8
-
23
-
-
0034808070
-
-
Morelli, X.; Palma, N.; Guerlesquin, F.; Rigby, A. C. Protein Sci. 2001, 10, 2131-2137.
-
(2001)
Protein Sci.
, vol.10
, pp. 2131-2137
-
-
Morelli, X.1
Palma, N.2
Guerlesquin, F.3
Rigby, A.C.4
-
24
-
-
0029829209
-
-
Lloyd, E.; Burk, D. L.; Ferrer, J. C.; Maurus, R.; Doran, J.; Carey, P. R.; Brayer, G. D.; Mauk, A. G. Biochemistry 1996, 35, 11901-11912.
-
(1996)
Biochemistry
, vol.35
, pp. 11901-11912
-
-
Lloyd, E.1
Burk, D.L.2
Ferrer, J.C.3
Maurus, R.4
Doran, J.5
Carey, P.R.6
Brayer, G.D.7
Mauk, A.G.8
-
25
-
-
0000803419
-
-
Lloyd, E.; King, b. B. C.; Hawkridge, F. M.; Mauk, A. G. Inorg. Chem. 1998, 37, 2888-2892.
-
(1998)
Inorg. Chem.
, vol.37
, pp. 2888-2892
-
-
Lloyd, E.1
King, B.B.C.2
Hawkridge, F.M.3
Mauk, A.G.4
-
26
-
-
0025335197
-
-
Funk, W. D.; Lo, T. P.; Mauk, M. R.; Brayer, G. D.; MacGillivray, R. T. A.; Mauk, A. G. Biochemistry 1990, 29, 5500-5508.
-
(1990)
Biochemistry
, vol.29
, pp. 5500-5508
-
-
Funk, W.D.1
Lo, T.P.2
Mauk, M.R.3
Brayer, G.D.4
MacGillivray, R.T.A.5
Mauk, A.G.6
-
31
-
-
0024040620
-
-
Northrup, S. H.; Boles, J. O.; Reynolds, J. C. L. Science 1988, 241, 67-70.
-
(1988)
Science
, vol.241
, pp. 67-70
-
-
Northrup, S.H.1
Boles, J.O.2
Reynolds, J.C.L.3
-
35
-
-
1542340883
-
-
note
-
The use of other criteria for success is illuminating and will be the subject of other reports.
-
-
-
-
36
-
-
0035281357
-
-
Elcock, A. H.; Sept, D.; McCammon, J. A. J. Phys. Chem. B 2001, 105, 1504-1518.
-
(2001)
J. Phys. Chem. B
, vol.105
, pp. 1504-1518
-
-
Elcock, A.H.1
Sept, D.2
McCammon, J.A.3
-
38
-
-
0029011701
-
-
Cornell, W. D.; Cieplak, P.; Bayly, C. I.; Gould, I. R.; Merz, J., K. M. ; Ferguson, D. M.; Spellmeyer, D. C.; Fox, T.; Caldwell, J. W.; Kollman, P. A. J. Am. Chem. Soc. 1995, 117, 5179-5197.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 5179-5197
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Merz, J.K.M.5
Ferguson, D.M.6
Spellmeyer, D.C.7
Fox, T.8
Caldwell, J.W.9
Kollman, P.A.10
-
39
-
-
32844457567
-
-
Sitkoff, D.; Sharp, K. A.; Honig, B. J. Phys. Chem. 1994, 98, 1978-1988.
-
(1994)
J. Phys. Chem.
, vol.98
, pp. 1978-1988
-
-
Sitkoff, D.1
Sharp, K.A.2
Honig, B.3
-
41
-
-
0000208839
-
-
McLachlan, S. J.; La Mar, G. N.; Sletten, E. J. Am. Chem. Soc. 1986, 108, 1285-1291.
-
(1986)
J. Am. Chem. Soc.
, vol.108
, pp. 1285-1291
-
-
McLachlan, S.J.1
La Mar, G.N.2
Sletten, E.3
-
42
-
-
0024441995
-
-
Altman, J.; Lipka, J. J.; Kuntz, I. D.; Waskell, L. Biochemistry 1989, 28, 7516-7523.
-
(1989)
Biochemistry
, vol.28
, pp. 7516-7523
-
-
Altman, J.1
Lipka, J.J.2
Kuntz, I.D.3
Waskell, L.4
-
43
-
-
1542370547
-
-
note
-
More complicated behavior is seen at higher concentrations. This will be described later.
-
-
-
-
44
-
-
0032956179
-
-
Sokerina, E. V.; Ullmann, G. M.; Van Pouderoyen, G.; Canters, G. W.; Kostic, N. M. JBIC, J. Biol. Inorg. Chem. 1999, 4, 111-121.
-
(1999)
JBIC, J. Biol. Inorg. Chem.
, vol.4
, pp. 111-121
-
-
Sokerina, E.V.1
Ullmann, G.M.2
Van Pouderoyen, G.3
Canters, G.W.4
Kostic, N.M.5
-
47
-
-
1542340882
-
-
note
-
Van Leeuven presented a more sophisticated equation which includes not only the charge-charge interactions but also terms involving charge-dipole and dipole-dipole interactions. Given the success with the simpler function, our conclusions would not change if we used the more complicated function, whose parameters are highly correlated.
-
-
-
-
49
-
-
0019879112
-
-
Van Leeuwen, J. W.; Mofers, F. J. M.; Veerman, E. C. I. Biochim. Biophys. Acta 1981, 635, 434-439.
-
(1981)
Biochim. Biophys. Acta
, vol.635
, pp. 434-439
-
-
Van Leeuwen, J.W.1
Mofers, F.J.M.2
Veerman, E.C.I.3
-
52
-
-
36849122972
-
-
Zwanzig, R. W. J. Chem. Phys. 1954, 22, 1420-1426. Erratum. J. Chem. Phys. 1954, 22, 2099.
-
(1954)
J. Chem. Phys.
, vol.22
, pp. 1420-1426
-
-
Zwanzig, R.W.1
-
53
-
-
36849122972
-
Erratum
-
Zwanzig, R. W. J. Chem. Phys. 1954, 22, 1420-1426. Erratum. J. Chem. Phys. 1954, 22, 2099.
-
(1954)
J. Chem. Phys.
, vol.22
, pp. 2099
-
-
-
57
-
-
12144288712
-
-
Binder, K.; Baumgaertner, A.; Hansen, J. P.; Kalos, M. H.; Kehr, K. W.; Landau, D. P.; Levesque, D.; Mueller-Krumbhaar, H.; Rebbi, C.; Saito, Y.; Schmidt, D.; Stauffer, D.; Weis, J. J. Top. Curr. Phys. 1987, 36, 299-324.
-
(1987)
Top. Curr. Phys.
, vol.36
, pp. 299-324
-
-
Binder, K.1
Baumgaertner, A.2
Hansen, J.P.3
Kalos, M.H.4
Kehr, K.W.5
Landau, D.P.6
Levesque, D.7
Mueller-Krumbhaar, H.8
Rebbi, C.9
Saito, Y.10
Schmidt, D.11
Stauffer, D.12
Weis, J.J.13
-
58
-
-
5744249209
-
-
Metropolis, N.; Rosenbluth, A. W.; Rosenbluth, M. N.; Teller, A. H.; Teller, E. J. Chem. Phys. 1953, 21, 1087-1092.
-
(1953)
J. Chem. Phys.
, vol.21
, pp. 1087-1092
-
-
Metropolis, N.1
Rosenbluth, A.W.2
Rosenbluth, M.N.3
Teller, A.H.4
Teller, E.5
-
59
-
-
0342321950
-
-
Sham, Y. Y.; Chu, Z. T.; Tao, H.; Warshel, A. Proteins 2000, 39, 393-407.
-
(2000)
Proteins
, vol.39
, pp. 393-407
-
-
Sham, Y.Y.1
Chu, Z.T.2
Tao, H.3
Warshel, A.4
-
61
-
-
0037076152
-
-
Jones, M. L.; Kurnikov, I. V.; Beratan, D. N. J. Phys. Chem. A 2002, 106, 2002-2006.
-
(2002)
J. Phys. Chem. A
, vol.106
, pp. 2002-2006
-
-
Jones, M.L.1
Kurnikov, I.V.2
Beratan, D.N.3
-
62
-
-
0000801453
-
-
Miller, N. E.; Wander, M. C.; Cave, R. J. J. Phys. Chem. A 1999, 103, 1084-1093.
-
(1999)
J. Phys. Chem. A
, vol.103
, pp. 1084-1093
-
-
Miller, N.E.1
Wander, M.C.2
Cave, R.J.3
-
63
-
-
0034734357
-
-
Ponce, A.; Gray, H. B.; Winkler, J. R. J. Am. Chem. Soc. 2000, 122, 8187-8191.
-
(2000)
J. Am. Chem. Soc.
, vol.122
, pp. 8187-8191
-
-
Ponce, A.1
Gray, H.B.2
Winkler, J.R.3
-
64
-
-
0033523919
-
-
Page, C. C.; Moser, C. C.; Chen, X.; Dutton, P. L. Nature (London) 1999, 402, 47-52.
-
(1999)
Nature (London)
, vol.402
, pp. 47-52
-
-
Page, C.C.1
Moser, C.C.2
Chen, X.3
Dutton, P.L.4
-
65
-
-
0034294024
-
-
Sugita, Y.; Kitao, A.; Okamoto, Y. J. Chem. Phys. 2000, 113, 6042-6051.
-
(2000)
J. Chem. Phys.
, vol.113
, pp. 6042-6051
-
-
Sugita, Y.1
Kitao, A.2
Okamoto, Y.3
-
66
-
-
0033862774
-
-
Kao, Y. H.; Fitch, C. A.; Bhattacharya, S.; Sarkisian, C. J.; Lecomte, J. T. J.; Garcia-Moreno, B. Biophys. J. 2000, 79, 1637-1654.
-
(2000)
Biophys. J.
, vol.79
, pp. 1637-1654
-
-
Kao, Y.H.1
Fitch, C.A.2
Bhattacharya, S.3
Sarkisian, C.J.4
Lecomte, J.T.J.5
Garcia-Moreno, B.6
-
67
-
-
0000596542
-
-
La Mar, G. N.; Emerson, S. D.; Lecomte, J. T. J.; Pande, U.; Smith, K. M.; Craig, G. W.; Kehres, L. A. J. Am. Chem. Soc. 1986, 108, 5568-5573.
-
(1986)
J. Am. Chem. Soc.
, vol.108
, pp. 5568-5573
-
-
La Mar, G.N.1
Emerson, S.D.2
Lecomte, J.T.J.3
Pande, U.4
Smith, K.M.5
Craig, G.W.6
Kehres, L.A.7
-
68
-
-
0031056708
-
-
Hunter, C. L.; Lloyd, E.; Eltis, L., D.; Rafferty, S. P.; Lee, H.; Smith, M.; Mauk, A. G. Biochemistry 1997, 36, 1010-1017.
-
(1997)
Biochemistry
, vol.36
, pp. 1010-1017
-
-
Hunter, C.L.1
Lloyd, E.2
Eltis, L.D.3
Rafferty, S.P.4
Lee, H.5
Smith, M.6
Mauk, A.G.7
-
69
-
-
0030729719
-
-
Zhou, H.-X.; Wong, K.-Y.; Vijayakumar, M. Proc. Natl. Acad. Sci. U.S.A. 1997, 94, 12372-12377.
-
(1997)
Proc. Natl. Acad. Sci. U.S.A.
, vol.94
, pp. 12372-12377
-
-
Zhou, H.-X.1
Wong, K.-Y.2
Vijayakumar, M.3
-
73
-
-
0033566576
-
-
Norel, R.; Petrey, D.; Wolfson, H. J.; Nussinov, R. Proteins: Struct., Funct., Genet. 1999, 36, 307-317.
-
(1999)
Proteins: Struct., Funct., Genet.
, vol.36
, pp. 307-317
-
-
Norel, R.1
Petrey, D.2
Wolfson, H.J.3
Nussinov, R.4
-
74
-
-
0003187567
-
-
Conte, L. L.; Chothia, C.; Janin, J. J. Mol. Biol. 1999, 285, 2177-2198.
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 2177-2198
-
-
Conte, L.L.1
Chothia, C.2
Janin, J.3
-
77
-
-
0031272908
-
-
Nocek, J. M.; Zhou, J. S.; Hoffman, B. M. J. Electroanal. Chem. 1997, 438, 55-60.
-
(1997)
J. Electroanal. Chem.
, vol.438
, pp. 55-60
-
-
Nocek, J.M.1
Zhou, J.S.2
Hoffman, B.M.3
-
81
-
-
0034878525
-
-
Lamb, A. L.; Torres, A. S.; O'Halloran, T. V.; Rosenzweig, A. C. Nat. Struct. Biol. 2001, 8, 751-755.
-
(2001)
Nat. Struct. Biol.
, vol.8
, pp. 751-755
-
-
Lamb, A.L.1
Torres, A.S.2
O'Halloran, T.V.3
Rosenzweig, A.C.4
|