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Volumn 7, Issue 4, 2012, Pages 22-34

Data mining over biological datasets: An integrated approach based on computational intelligence

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL COMPLEXITY; BIOLOGICAL DATA MINING; BIOLOGICAL INFORMATION; BIOLOGICAL SIGNIFICANCE; COMPUTATIONAL TECHNIQUE; COORDINATED PATTERNS; DATA EXPLOSION; DATA MINING TASKS; DATA SETS; DATA TYPE; GENOMICS; INTEGRATED APPROACH; MEASUREMENT ARTIFACTS; METABOLIC PATHWAYS; METABOLOMICS; PROTEOMICS TECHNOLOGY; TECHNICAL ADVANCES; TRAINING ALGORITHMS; TRANSCRIPTOMICS;

EID: 84867880432     PISSN: 1556603X     EISSN: None     Source Type: Journal    
DOI: 10.1109/MCI.2012.2215122     Document Type: Article
Times cited : (19)

References (75)
  • 2
    • 33845665396 scopus 로고    scopus 로고
    • Integrated analysis of metabolite and transcript levels reveals the metabolic shifts that underlie tomato fruit development and highlight regulatory aspects of metabolic network behavior
    • DOI 10.1104/pp.106.088534
    • F. Carrari, C. Baxter, B. Usadel, E. Urbanczyk-Wochniak, M.-I. Zanor, A. Nunes- Nesi, V. Nikiforova, D. Centero, A. Ratzka, M. Pauly, L. J. Sweetlove, and A. R. Fernie, "Integrated analysis of metabolite and transcript levels reveals the metabolic shifts that underlie tomato fruit development and highlight regulatory aspects of metabolic network behavior," Plant Physiol., vol. 142, pp. 1380-1396, Dec. 2006. (Pubitemid 44956921)
    • (2006) Plant Physiology , vol.142 , Issue.4 , pp. 1380-1396
    • Carrari, F.1    Baxter, C.2    Usadel, B.3    Urbanczyk-Wochniak, E.4    Zanor, M.-I.5    Nunes-Nesi, A.6    Nikiforova, V.7    Centero, D.8    Ratzka, A.9    Pauly, M.10    Sweetlove, L.J.11    Fernie, A.R.12
  • 3
    • 36949021555 scopus 로고    scopus 로고
    • Data integration in plant biology: The O2PLS method for combined modeling of transcript and metabolite data
    • DOI 10.1111/j.1365-313X.2007.03293.x
    • M. Bylesjo, D. Eriksson, M. Kusano, T. Moritz, and J. Trygg, "Data integration in plant biology: The O2PLS method for combined modeling of transcript and metabolite data," Plant J., vol. 52, no. 6, pp. 1181-1191, 2007. (Pubitemid 350237582)
    • (2007) Plant Journal , vol.52 , Issue.6 , pp. 1181-1191
    • Bylesjo, M.1    Eriksson, D.2    Kusano, M.3    Moritz, T.4    Trygg, J.5
  • 5
    • 33845597971 scopus 로고    scopus 로고
    • Validation measures for clustering algorithms incorporating biological information
    • DOI 10.1109/IMSCCS.2006.139, 1636029, First International Multi- Symposiums on Computer and Computational Sciences, IMSCCS'06
    • S. Datta and S. Datta, "Validation measures for clustering algorithms incorporating biological information," in Proc. 1st Int. Multi-Symp. Computer Computational Sciences, 2006, vol. 1, pp. 131-135. (Pubitemid 44930482)
    • (2006) First International Multi- Symposiums on Computer and Computational Sciences, IMSCCS'06 , vol.1 , pp. 131-135
    • Datta, S.1    Datta, S.2
  • 6
    • 65549104397 scopus 로고    scopus 로고
    • A roadmap of clustering algorithms: Finding a match for a biomedical application
    • B. Andreopoulos, A. An, X. Wang, and M. Schroeder, "A roadmap of clustering algorithms: Finding a match for a biomedical application," Briefings Bioinf., vol. 10, no. 3, pp. 297-314, 2009.
    • (2009) Briefings Bioinf. , vol.10 , Issue.3 , pp. 297-314
    • Andreopoulos, B.1    An, A.2    Wang, X.3    Schroeder, M.4
  • 8
    • 67549103690 scopus 로고    scopus 로고
    • Gene clustering via integrated Markov models combining individual and pairwise features
    • Apr
    • M. Vignes and F. Forbes, "Gene clustering via integrated Markov models combining individual and pairwise features," IEEE/ACM Trans. Comput. Biol. Bioinf., vol. 6, pp. 260-270, Apr. 2009.
    • (2009) IEEE/ACM Trans. Comput. Biol. Bioinf. , vol.6 , pp. 260-270
    • Vignes, M.1    Forbes, F.2
  • 11
    • 20044386129 scopus 로고    scopus 로고
    • Comparison of changes in fruit gene expression in tomato introgression lines provides evidence of genome-wide transcriptional changes and reveals links to mapped QTLs and described traits
    • DOI 10.1093/jxb/eri154
    • C. J. Baxter, M. Sabar, W. P. Quick, and L. J. Sweetlove, "Comparison of changes in fruit gene expression in tomato introgression lines provides evidence of genomewide transcriptional changes and reveals links to mapped QTLS and described traits," J. Experim. Bot., vol. 56, no. 416, pp. 1591-1604, 2005. (Pubitemid 40764447)
    • (2005) Journal of Experimental Botany , vol.56 , Issue.416 , pp. 1591-1604
    • Baxter, C.J.1    Sabar, M.2    Quick, W.P.3    Sweetlove, L.J.4
  • 14
    • 77957007197 scopus 로고    scopus 로고
    • *omeSOM: A software for integration, clustering and visualization of transcriptional and metabolite data mined from interspecific crosses of crop plants
    • D. Milone, G. Stegmayer, L. Kamenetzky, M. Lopez, J. Giovannoni, J. M. Lee, and F. Carrari, " *omeSOM: A software for integration, clustering and visualization of transcriptional and metabolite data mined from interspecific crosses of crop plants," BMC Bioinf., vol. 11, pp. 438-448, 2010.
    • BMC Bioinf. , vol.11 , Issue.2010 , pp. 438-448
    • Milone, D.1    Stegmayer, G.2    Kamenetzky, L.3    Lopez, M.4    Giovannoni, J.5    Lee, J.M.6    Carrari, F.7
  • 15
    • 84888284811 scopus 로고    scopus 로고
    • [Online]
    • Arabidopsis Annotations. [Online]. Available: http://www.arabidopsis.org
    • Arabidopsis Annotations
  • 16
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto Encyclopedia of Genes and Genomes
    • M. Kanehisa and S. Goto, "KEGG: Kyoto encyclopedia of genes and genomes," Nucl. Acids Res., vol. 28, pp. 27-30, 2000. (Pubitemid 30047706)
    • (2000) Nucleic Acids Research , vol.28 , Issue.1 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 17
    • 84859199364 scopus 로고    scopus 로고
    • A biologically-inspired validity measure for comparison of clustering methods over metabolic datasets
    • May
    • G. Stegmayer, D. H. Milone, L. Kamenetzky, M. G. Lpez, and F. Carrari, "A biologically-inspired validity measure for comparison of clustering methods over metabolic datasets," IEEE/ACM Trans. Comput. Biol. Bioinf., vol. 9, no. 3, pp. 706-716, May 2012.
    • (2012) IEEE/ACM Trans. Comput. Biol. Bioinf. , vol.9 , Issue.3 , pp. 706-716
    • Stegmayer, G.1    Milone, D.H.2    Kamenetzky, L.3    Lpez, M.G.4    Carrari, F.5
  • 20
    • 25444476441 scopus 로고    scopus 로고
    • Systematic survey reveals general applicability of "guilt-by- association" within gene coexpression networks
    • Sept.
    • C. J. Wolfe, I. S. Kohane, and A. J. Butte, "Systematic survey reveals general applicability of "guilt-by-association" within gene coexpression networks," BMC Bioinf., vol. 6, pp. 227-237, Sept. 2005.
    • (2005) BMC Bioinf. , vol.6 , pp. 227-237
    • Wolfe, C.J.1    Kohane, I.S.2    Butte, A.J.3
  • 24
    • 2942511784 scopus 로고    scopus 로고
    • Clustering of the SOM easily reveals distinct gene expression patterns: Results of a reanalysis of lymphoma study
    • J. Wang, J. Delabie, H. Aasheim, E. Smeland, and O. Myklebost, "Clustering of the SOM easily reveals distinct gene expression patterns: Results of a reanalysis of lymphoma study," BMC Bioinf., vol. 3, no. 1, pp. 36-46, 2002.
    • (2002) BMC Bioinf. , vol.3 , Issue.1 , pp. 36-46
    • Wang, J.1    Delabie, J.2    Aasheim, H.3    Smeland, E.4    Myklebost, O.5
  • 26
    • 77952311570 scopus 로고    scopus 로고
    • Autosome: A clustering method for identifying gene expression modules without prior knowledge of cluster number
    • A. Newman and J. Cooper, "Autosome: A clustering method for identifying gene expression modules without prior knowledge of cluster number," BMC Bioinf., vol. 11, no. 1, p. 117, 2010.
    • (2010) BMC Bioinf. , vol.11 , Issue.1 , pp. 117
    • Newman, A.1    Cooper, J.2
  • 27
    • 77954071738 scopus 로고    scopus 로고
    • Correlation network analysis reveals a sequential reorganization of metabolic and transcriptional states during germination and gene-metabolite relationships in developing seedlings of arabidopsis
    • E. Allen, A. Moing, T. Ebbels, M. Maucourt, A. Tomos, D. Rolin, and M. Hooks, "Correlation network analysis reveals a sequential reorganization of metabolic and transcriptional states during germination and gene-metabolite relationships in developing seedlings of arabidopsis," BMC Syst. Biol., vol. 4, no. 1, pp. 62-72, 2010.
    • (2010) BMC Syst. Biol. , vol.4 , Issue.1 , pp. 62-72
    • Allen, E.1    Moing, A.2    Ebbels, T.3    Maucourt, M.4    Tomos, A.5    Rolin, D.6    Hooks, M.7
  • 32
    • 78649592081 scopus 로고    scopus 로고
    • Interaction with diurnal and circadian regulation results in dynamic metabolic and transcriptional changes during cold acclimation in arabidopsis
    • C. Espinoza, T. Degenkolbe, C. Caldana, E. Zuther, A. Leisse, L. Willmitzer, D. Hincha, and M. Hannah, "Interaction with diurnal and circadian regulation results in dynamic metabolic and transcriptional changes during cold acclimation in arabidopsis," PLOS ONE, vol. 5, no. 11, p. e14101, 2010.
    • (2010) Plos One , vol.5 , Issue.11
    • Espinoza, C.1    Degenkolbe, T.2    Caldana, C.3    Zuther, E.4    Leisse, A.5    Willmitzer, L.6    Hincha, D.7    Hannah, M.8
  • 34
    • 37849020436 scopus 로고    scopus 로고
    • Decoding genes with coexpression networks and metabolomics - Majority report by precogs
    • K. Saito, M. Y. Hirai, and K. Yonekura-Sakakibara, "Decoding genes with coexpression networks and metabolomics - Majority report by precogs," Trends Plant Sci., vol. 13, no. 1, pp. 36-43, 2008.
    • (2008) Trends Plant Sci. , vol.13 , Issue.1 , pp. 36-43
    • Saito, K.1    Hirai, M.Y.2    Yonekura-Sakakibara, K.3
  • 37
    • 77954396635 scopus 로고    scopus 로고
    • Combining genetic diversity, informatics and metabolomics to facilitate annotation of plant gene function
    • June
    • T. Tohge and A. Fernie, "Combining genetic diversity, informatics and metabolomics to facilitate annotation of plant gene function," Nature Protocols, vol. 5, no. 6, pp. 1210-1227, June 2010.
    • (2010) Nature Protocols , vol.5 , Issue.6 , pp. 1210-1227
    • Tohge, T.1    Fernie, A.2
  • 38
    • 10244264786 scopus 로고    scopus 로고
    • The CRASSS plug-in for integrating annotation data with hierarchical clustering results
    • DOI 10.1093/bioinformatics/bth362
    • E. Buehler, J. Sachs, K. Shao, A. Bagchi, and L. Ungar, "The CRASSS plug-in for integrating annotation data with hierarchical clustering results," Bioinformatics, vol. 20, no. 17, pp. 3266-3269, 2004. (Pubitemid 39619224)
    • (2004) Bioinformatics , vol.20 , Issue.17 , pp. 3266-3269
    • Buehler, E.C.1    Sachs, J.R.2    Shao, K.3    Bagchi, A.4    Ungar, L.H.5
  • 39
    • 33646584520 scopus 로고    scopus 로고
    • GOurmet: A tool for quantitative comparison and visualization of gene expression profiles based on gene ontology (GO) distributions
    • J. Doherty, L. Carmichael, and J. Mills, "GOurmet: A tool for quantitative comparison and visualization of gene expression profiles based on gene ontology (GO) distributions," BMC Bioinf., vol. 7, no. 1, p. 151, 2006.
    • (2006) BMC Bioinf. , vol.7 , Issue.1 , pp. 151
    • Doherty, J.1    Carmichael, L.2    Mills, J.3
  • 40
    • 22744458472 scopus 로고    scopus 로고
    • Pathways to the analysis of microarray data
    • DOI 10.1016/j.tibtech.2005.05.011, PII S0167779905001411
    • R. K. Curtis, M. Oresic, and A. Vidal-Puig, "Pathways to the analysis of microarray data," Trends Biotechnol., vol. 23, no. 8, pp. 429-435, 2005. (Pubitemid 41032923)
    • (2005) Trends in Biotechnology , vol.23 , Issue.8 , pp. 429-435
    • Curtis, R.K.1    Oresic, M.2    Vidal-Puig, A.3
  • 41
    • 2942601249 scopus 로고    scopus 로고
    • Selection of informative clusters from hierarchical cluster tree with gene classes
    • P. Toronen, "Selection of informative clusters from hierarchical cluster tree with gene classes," BMC Bioinf., vol. 5, no. 1, p. 32, 2004.
    • (2004) BMC Bioinf. , vol.5 , Issue.1 , pp. 32
    • Toronen, P.1
  • 43
    • 67649840899 scopus 로고    scopus 로고
    • Seeing the forest for the trees: Using the gene ontology to restructure hierarchical clustering
    • D. Dotan-Cohen, S. Kasif, and A. A. Melkman, "Seeing the forest for the trees: Using the gene ontology to restructure hierarchical clustering," Bioinformatics, vol. 25, no. 14, pp. 1789-1795, 2009.
    • (2009) Bioinformatics , vol.25 , Issue.14 , pp. 1789-1795
    • Dotan-Cohen, D.1    Kasif, S.2    Melkman, A.A.3
  • 44
    • 0038014879 scopus 로고    scopus 로고
    • Co-clustering of biological networks and gene expression data
    • D. Hanisch, A. Zien, R. Zimmer, and T. Lengauer, "Co-clustering of biological networks and gene expression data," Bioinformatics, vol. 18, no. 1, pp. 145-154, 2002.
    • (2002) Bioinformatics , vol.18 , Issue.1 , pp. 145-154
    • Hanisch, D.1    Zien, A.2    Zimmer, R.3    Lengauer, T.4
  • 47
    • 33646895693 scopus 로고    scopus 로고
    • Incorporating biological knowledge into distance-based clustering analysis of microarray gene expression data
    • DOI 10.1093/bioinformatics/btl065
    • D. Huang and W. Pan, "Incorporating biological knowledge into distance-based clustering analysis of microarray gene expression data," Bioinformatics, vol. 22, no. 10, pp. 1259-1268, 2006. (Pubitemid 43779020)
    • (2006) Bioinformatics , vol.22 , Issue.10 , pp. 1259-1268
    • Huang, D.1    Pan, W.2
  • 48
    • 4344660263 scopus 로고    scopus 로고
    • A memetic co-clustering algorithm for gene expression profiles and biological annotation
    • N. Speer, C. Spieth, and A. Zell, "A memetic co-clustering algorithm for gene expression profiles and biological annotation," in Proc. Congr. Evolutionary Computation, 2004, vol. 2, pp. 1631-1638.
    • (2004) Proc. Congr. Evolutionary Computation , vol.2 , pp. 1631-1638
    • Speer, N.1    Spieth, C.2    Zell, A.3
  • 49
    • 76849109688 scopus 로고    scopus 로고
    • Data-fusion in clustering microarray data: Balancing discovery and interpretability
    • R. Kustra and A. Zagdanski, "Data-fusion in clustering microarray data: Balancing discovery and interpretability," IEEE/ACM Trans. Comput. Biol. Bioinf., vol. 7, no. 1, pp. 50-63, 2010.
    • (2010) IEEE/ACM Trans. Comput. Biol. Bioinf. , vol.7 , Issue.1 , pp. 50-63
    • Kustra, R.1    Zagdanski, A.2
  • 50
    • 25144456056 scopus 로고    scopus 로고
    • Computational cluster validation in post-genomic data analysis
    • DOI 10.1093/bioinformatics/bti517
    • J. Handl, J. Knowles, and D. B. Kell, "Computational cluster validation in postgenomic data analysis," Bioinformatics, vol. 21, no. 15, pp. 3201-3212, 2005. (Pubitemid 41418432)
    • (2005) Bioinformatics , vol.21 , Issue.15 , pp. 3201-3212
    • Handl, J.1    Knowles, J.2    Kell, D.B.3
  • 52
    • 0036798238 scopus 로고    scopus 로고
    • Judging the quality of gene expression-based clustering methods using gene annotation
    • DOI 10.1101/gr.397002
    • F. Gibbons and F. Roth, "Judging the quality of gene expression-based clustering methods using gene annotation," Genome Res., vol. 12, pp. 1574-1581, 2002. (Pubitemid 35175096)
    • (2002) Genome Research , vol.12 , Issue.10 , pp. 1574-1581
    • Gibbons, F.D.1    Roth, F.P.2
  • 53
    • 79960960382 scopus 로고    scopus 로고
    • Applications of self-organising map SOM for prioritisation of endemic zones of filariasis in Andhra Pradesh, India
    • U. S. Murty, M. S. Rao, K. Sriram, and K. M. Rao, "Applications of self-organising map SOM for prioritisation of endemic zones of filariasis in Andhra Pradesh, India," Int. J. Data Mining Bioinf., vol. 5, no. 4, pp. 417-427, 2011.
    • (2011) Int. J. Data Mining Bioinf. , vol.5 , Issue.4 , pp. 417-427
    • Murty, U.S.1    Rao, M.S.2    Sriram, K.3    Rao, K.M.4
  • 54
    • 0035532141 scopus 로고    scopus 로고
    • Estimating the number of clusters in a dataset via the gap statistic
    • R. Tibshirani, G. Walther, and T. Hastie, "Estimating the number of clusters in a dataset via the gap statistic," J. Royal Stat. Soc. B, vol. 63, no. 2, pp. 411-423, 2001.
    • (2001) J. Royal Stat. Soc. B , vol.63 , Issue.2 , pp. 411-423
    • Tibshirani, R.1    Walther, G.2    Hastie, T.3
  • 57
    • 76349105090 scopus 로고    scopus 로고
    • Linkage discovery through data mining [research frontier]
    • C.-K. Ting, W.-M. Zeng, and T.-C. Lin, "Linkage discovery through data mining [research frontier]," IEEE Comput. Intell. Mag., vol. 5, no. 1, pp. 10-13, 2010.
    • (2010) IEEE Comput. Intell. Mag. , vol.5 , Issue.1 , pp. 10-13
    • Ting, C.-K.1    Zeng, W.-M.2    Lin, T.-C.3
  • 58
    • 80054957568 scopus 로고    scopus 로고
    • Medical image registration using evolutionary computation: An experimental survey
    • O. C. S. Damas and J. Santamaria, "Medical image registration using evolutionary computation: An experimental survey," IEEE Comput. Intell. Mag., vol. 6, no. 4, pp. 26-42, 2011.
    • (2011) IEEE Comput. Intell. Mag. , vol.6 , Issue.4 , pp. 26-42
    • Damas, O.C.S.1    Santamaria, J.2
  • 60
    • 45949096079 scopus 로고    scopus 로고
    • Computational intelligence approaches for pattern discovery in biological systems
    • DOI 10.1093/bib/bbn021, Special Issue: Critical Technologies for Bioinformatics
    • G. Fogel, "Computational intelligence approaches for pattern discovery in biological systems," Briefings Bioinf., vol. 9, no. 4, pp. 307-316, 2008. (Pubitemid 351890827)
    • (2008) Briefings in Bioinformatics , vol.9 , Issue.4 , pp. 307-316
    • Fogel, G.B.1
  • 61
    • 0031850628 scopus 로고    scopus 로고
    • Computation with the KEGG pathway database
    • DOI 10.1016/S0303-2647(98)00017-3, PII S0303264798000173
    • H. Ogata, S. Goto, W. Fujibuchi, and M. Kanehisa, "Computation with the KEGG pathway database," Biosystems, vol. 47, nos. 1-2, pp. 119-128, 1998. (Pubitemid 28369499)
    • (1998) BioSystems , vol.47 , Issue.1-2 , pp. 119-128
    • Ogata, H.1    Goto, S.2    Fujibuchi, W.3    Kanehisa, M.4
  • 62
    • 77549085201 scopus 로고    scopus 로고
    • Linked metabolites: A tool for the construction of directed metabolic graphs
    • J. Easton, L. Harris, M. Viant, A. Peet, and T. Arvanitis, "Linked metabolites: A tool for the construction of directed metabolic graphs," Comput. Biol. Med., vol. 40, no. 3, pp. 340-349, 2010.
    • (2010) Comput. Biol. Med. , vol.40 , Issue.3 , pp. 340-349
    • Easton, J.1    Harris, L.2    Viant, M.3    Peet, A.4    Arvanitis, T.5
  • 63
    • 23144466440 scopus 로고    scopus 로고
    • Metabolic PathFinding: Inferring relevant pathways in biochemical networks
    • DOI 10.1093/nar/gki437
    • D. Croes, F. Couche, S. Wodak, and J. van Helden, "Metabolic pathfinding: Inferring relevant pathways in biochemical networks," Nucl. Acids Res., vol. 33, no. 2, pp. W326-W330, 2005. (Pubitemid 44529937)
    • (2005) Nucleic Acids Research , vol.33 , Issue.WEB. SERV. ISS.
    • Croes, D.1    Couche, F.2    Wodak, S.J.3    Van Helden, J.4
  • 64
    • 0141850380 scopus 로고    scopus 로고
    • PathMiner: Predicting metabolic pathways by heuristic search
    • DOI 10.1093/bioinformatics/btg217
    • D. McShan, S. Rao, and I. Shah, "PathMiner: Predicting metabolic pathways by heuristic search," Bioinformatics, vol. 19, no. 13, pp. 1692-1698, 2003. (Pubitemid 37121158)
    • (2003) Bioinformatics , vol.19 , Issue.13 , pp. 1692-1698
    • McShan, D.C.1    Rao, S.2    Shah, I.3
  • 65
    • 77954699474 scopus 로고    scopus 로고
    • Systems metabolic engineering: Genome-scale models and beyond
    • J. Blazeck and H. Alper, "Systems metabolic engineering: Genome-scale models and beyond," Biotechnol. J., vol. 5, no. 7, pp. 647-659, 2010.
    • (2010) Biotechnol. J. , vol.5 , Issue.7 , pp. 647-659
    • Blazeck, J.1    Alper, H.2
  • 66
    • 0034973362 scopus 로고    scopus 로고
    • Evolutionary optimization of metabolic pathways. Theoretical reconstruction of the stoichiometry of ATP and NADH producing systems
    • DOI 10.1006/bulm.2000.0197
    • O. Ebenho and R. Heinrich, "Evolutionary optimization of metabolic pathways. Theoretical reconstruction of the stoichiometry of ATP and NADH producing systems," Bulletin Math. Biol., vol. 63, no. 1, pp. 21-55, 2001. (Pubitemid 32577423)
    • (2001) Bulletin of Mathematical Biology , vol.63 , Issue.1 , pp. 21-55
    • Ebenhoh, O.1    Heinrich, R.2
  • 67
    • 77952915373 scopus 로고    scopus 로고
    • Construction and optimization of synthetic pathways in metabolic engineering
    • D. Na, T. Kim, and S. Lee, "Construction and optimization of synthetic pathways in metabolic engineering," Curr. Opin. Microbiol., vol. 13, no. 3, pp. 363-370, 2010.
    • (2010) Curr. Opin. Microbiol. , vol.13 , Issue.3 , pp. 363-370
    • Na, D.1    Kim, T.2    Lee, S.3
  • 68
    • 77951109180 scopus 로고    scopus 로고
    • Utilizing elementary mode analysis, pathway thermodynamics, and a genetic algorithm for metabolic f lux determination and optimal metabolic network design
    • Apr.
    • B. A. Boghigian, H. Shi, K. Lee, and B. A. Pfeifer, "Utilizing elementary mode analysis, pathway thermodynamics, and a genetic algorithm for metabolic f lux determination and optimal metabolic network design," BMC Syst. Biol., vol. 4, pp. 49-66, Apr. 2010.
    • (2010) BMC Syst. Biol. , vol.4 , pp. 49-66
    • Boghigian, B.A.1    Shi, H.2    Lee, K.3    Pfeifer, B.A.4
  • 69
    • 0033532830 scopus 로고    scopus 로고
    • Optimal stoichiometric designs of ATP-producing systems as determined by an evolutionary algorithm
    • DOI 10.1006/jtbi.1999.0942
    • A. Stephani, J. C. Nuez, and R. Heinrich, "Optimal stoichiometric designs of ATPproducing systems as determined by an evolutionary algorithm," J. Theoret. Biol., vol. 199, no. 1, pp. 45-61, 1999. (Pubitemid 29335876)
    • (1999) Journal of Theoretical Biology , vol.199 , Issue.1 , pp. 45-61
    • Stephani, A.1    Nuno, J.C.2    Heinrich, R.3
  • 70
    • 78649527924 scopus 로고    scopus 로고
    • Bridging the gap: Linking molecular simulations and systemic descriptions of cellular compartments
    • Nov.
    • T. Geyer, X. Mol, S. Blass, and V. Helms, "Bridging the gap: Linking molecular simulations and systemic descriptions of cellular compartments," PLOS ONE, vol. 5, p. 14070, Nov. 2010.
    • Plos One , vol.5 , Issue.2010 , pp. 14070
    • Geyer, T.1    Mol, X.2    Blass, S.3    Helms, V.4
  • 72
    • 0037365133 scopus 로고    scopus 로고
    • Investigating the regulation of one-carbon metabolism in Arabidopsis thaliana
    • DOI 10.1093/pcp/pcg029
    • R. Li, M. Moore, and J. King, "Investigating the regulation of one-carbon metabolism in arabidopsis thaliana," Plant Cell Physiol., vol. 44, no. 3, pp. 233-241, 2003. (Pubitemid 36439858)
    • (2003) Plant and Cell Physiology , vol.44 , Issue.3 , pp. 233-241
    • Li, R.1    Moore, M.2    King, J.3
  • 73
    • 0038460047 scopus 로고    scopus 로고
    • AraCyc: A biochemical pathway database for Arabidopsis
    • DOI 10.1104/pp.102.017236
    • L. A. Mueller, P. Zhang, and S. Y. Rhee, "AraCyc: A biochemical pathway database for arabidopsis," Plant Physiol., vol. 132, no. 2, pp. 453-460, 2003. (Pubitemid 36715048)
    • (2003) Plant Physiology , vol.132 , Issue.2 , pp. 453-460
    • Mueller, L.A.1    Zhang, P.2    Rhee, S.Y.3
  • 75
    • 37849040553 scopus 로고    scopus 로고
    • Combining classifiers to predict gene function in arabidopsis thaliana using large-scale gene expression measurements
    • Sept.
    • H. Lan, R. Carson, N. J. Provart, and A. J. Bonner, "Combining classifiers to predict gene function in arabidopsis thaliana using large-scale gene expression measurements," BMC Bioinf., vol. 8, p. 358, Sept. 2007.
    • (2007) BMC Bioinf. , vol.8 , pp. 358
    • Lan, H.1    Carson, R.2    Provart, N.J.3    Bonner, A.J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.