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Volumn 52, Issue 5, 2012, Pages 705-720

Challenges for biological interpretation of environmental proteomics data in non-model organisms

Author keywords

[No Author keywords available]

Indexed keywords

PROTEOME;

EID: 84867796045     PISSN: 15407063     EISSN: 15577023     Source Type: Journal    
DOI: 10.1093/icb/ics093     Document Type: Conference Paper
Times cited : (31)

References (76)
  • 1
    • 33746308468 scopus 로고    scopus 로고
    • Identification of proteomic signatures of exposure to marine pollutants in mussels (Mytilus edulis)
    • DOI 10.1074/mcp.M500333-MCP200
    • Apraiz I, Mi J, Cristobal S. 2006. Identification of proteomic signatures of exposure to marine pollutants in mussels (Mytilus edulis). Mol Cell Proteomics 5:1274-85. (Pubitemid 44103398)
    • (2006) Molecular and Cellular Proteomics , vol.5 , Issue.7 , pp. 1274-1285
    • Apraiz, I.1    Mi, J.2    Cristobal, S.3
  • 2
    • 84867799269 scopus 로고    scopus 로고
    • Analysis of tissue proteomes of the Gulf killifish, Fundulus grandis, by 2D electrophoresis and MALDI-TOF/TOF mass spectrometry
    • Abbaraju NV, Boutaghou MN, Townley IK, Zhang Q, Wang G, Cole RB, Rees BB. 2012. Analysis of tissue proteomes of the Gulf killifish, Fundulus grandis, by 2D electrophoresis and MALDI-TOF/TOF mass spectrometry. Integr Comp Biol 52:626-35.
    • (2012) Integr Comp Biol , vol.52 , pp. 626-635
    • Abbaraju, N.V.1    Boutaghou, M.N.2    Townley, I.K.3    Zhang, Q.4    Wang, G.5    Cole, R.B.6    Rees, B.B.7
  • 3
    • 49749123013 scopus 로고    scopus 로고
    • Improved image analysis workflow for 2-D gels enables large-scale 2-D gel-based proteomics studies-COPD biomarker discovery study
    • Bandow JE, Baker JD, Berth M, Painter C, Sepulveda OJ, Clark KA, Kilty I, VanBogelen RA. 2008. Improved image analysis workflow for 2-D gels enables large-scale 2-D gel-based proteomics studies-COPD biomarker discovery study. Proteomics 8:3030-41.
    • (2008) Proteomics , vol.8 , pp. 3030-3041
    • Bandow, J.E.1    Baker, J.D.2    Berth, M.3    Painter, C.4    Sepulveda, O.J.5    Clark, K.A.6    Kilty, I.7    VanBogelen, R.A.8
  • 4
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y. 1995. Controlling the false discovery rate: A practical and powerful approach to multiple testing. J R Statist Soc B 57:289-300.
    • (1995) J R Statist Soc B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 5
    • 33645369409 scopus 로고    scopus 로고
    • Ecological gradients and relative abundance of native (Mytilus trossulus) and invasive (Mytilus galloprovincialis) blue mussels in the California hybrid zone
    • Braby C, Somero G. 2006a. Ecological gradients and relative abundance of native (Mytilus trossulus) and invasive (Mytilus galloprovincialis) blue mussels in the California hybrid zone. Mar Biol 148:1249-62.
    • (2006) Mar Biol , vol.148 , pp. 1249-1262
    • Braby, C.1    Somero, G.2
  • 6
    • 33747064090 scopus 로고    scopus 로고
    • Following the heart: Temperature and salinity effects on heart rate in native and invasive species of blue mussels (genus Mytilus)
    • DOI 10.1242/jeb.02259
    • Braby CE, Somero GN. 2006b. Following the heart: Temperature and salinity effects on heart rate in native and invasive species of blue mussels (genus Mytilus). J Exp Biol 209:2554-66. (Pubitemid 44212845)
    • (2006) Journal of Experimental Biology , vol.209 , Issue.13 , pp. 2554-2566
    • Braby, C.E.1    Somero, G.N.2
  • 7
    • 33846240326 scopus 로고    scopus 로고
    • Statistical strategies for avoiding false discoveries in metabolomics and related experiments
    • DOI 10.1007/s11306-006-0037-z
    • Broadhurst D, Kell D. 2006. Statistical strategies for avoiding false discoveries in metabolomics and related experiments. Metabolomics 2:171-96. (Pubitemid 46099798)
    • (2006) Metabolomics , vol.2 , Issue.4 , pp. 171-196
    • Broadhurst, D.I.1    Kell, D.B.2
  • 9
    • 21244436700 scopus 로고    scopus 로고
    • Performance of some variable selection methods when multicollinearity is present
    • DOI 10.1016/j.chemolab.2004.12.011, PII S0169743905000031
    • Chong I-G, Jun C-H. 2005. Performance of some variable selection methods when multicollinearity is present. Chemometr Intell Lab Syst 78:103-12. (Pubitemid 40884382)
    • (2005) Chemometrics and Intelligent Laboratory Systems , vol.78 , Issue.1-2 , pp. 103-112
    • Chong, I.-G.1    Jun, C.-H.2
  • 10
    • 79959424627 scopus 로고    scopus 로고
    • Quantitative, high-resolution proteomics for data-driven systems biology
    • Cox J, Mann M. 2011. Quantitative, high-resolution proteomics for data-driven systems biology. Annu Rev Biochem 80:273-99.
    • (2011) Annu Rev Biochem , vol.80 , pp. 273-299
    • Cox, J.1    Mann, M.2
  • 11
    • 37249014081 scopus 로고    scopus 로고
    • The biological impact of mass-spectrometry-based proteomics
    • DOI 10.1038/nature06525, PII NATURE06525
    • Cravatt BF, Simon GM, Yates Iii Jr. 2007. The biological impact of mass-spectrometry-based proteomics. Nature 450:991-1000. (Pubitemid 350273629)
    • (2007) Nature , vol.450 , Issue.7172 , pp. 991-1000
    • Cravatt, B.F.1    Simon, G.M.2    Yates III, J.R.3
  • 12
    • 33646383088 scopus 로고    scopus 로고
    • Dimension reduction for classification with gene expression microarray data
    • Dai JJ, Lieu L, Rocke D. 2006. Dimension reduction for classification with gene expression microarray data. Stat Appl Genet Mol Biol 5:1-19.
    • (2006) Stat Appl Genet Mol Biol , vol.5 , pp. 1-19
    • Dai, J.J.1    Lieu, L.2    Rocke, D.3
  • 13
    • 79955079204 scopus 로고    scopus 로고
    • Spreading the risk: Small-scale body temperature variation among intertidal organisms and its implications for species persistence
    • Denny MW, Dowd WW, Bilir L, Mach KJ. 2011. Spreading the risk: Small-scale body temperature variation among intertidal organisms and its implications for species persistence. J Exp Mar Biol Ecol 400:175-90.
    • (2011) J Exp Mar Biol Ecol , vol.400 , pp. 175-190
    • Denny, M.W.1    Dowd, W.W.2    Bilir, L.3    Mach, K.J.4
  • 14
    • 0346361640 scopus 로고    scopus 로고
    • False discovery or missed discovery?
    • DOI 10.1038/sj.hdy.6800370
    • Devlin B, Roeder K, Wasserman L. 2003. False discovery or missed discovery? Heredity 91:537-8. (Pubitemid 38012605)
    • (2003) Heredity , vol.91 , Issue.6 , pp. 537-538
    • Devlin, B.1    Roeder, K.2    Wasserman, L.3
  • 15
    • 79953184690 scopus 로고    scopus 로고
    • Multiple hypothesis testing in proteomics: A strategy for experimental work
    • M110004374
    • Diz AP, Carvajal-Rodríguez A, Skibinski DOF. 2011. Multiple hypothesis testing in proteomics: A strategy for experimental work. Mol Cell Proteomics 10:M110.004374.
    • (2011) Mol Cell Proteomics , vol.10
    • Diz, A.P.1    Carvajal-Rodríguez, A.2    Skibinski, D.O.F.3
  • 16
    • 84857632275 scopus 로고    scopus 로고
    • Proteomics in evolutionary ecology: Linking the genotype with the phenotype
    • Diz AP, Martínez-Fernández M, Rolán-Alvarez E. 2012. Proteomics in evolutionary ecology: Linking the genotype with the phenotype. Mol Ecol 21:1060-80.
    • (2012) Mol Ecol , vol.21 , pp. 1060-1080
    • Diz, A.P.1    Martínez-Fernández, M.2    Rolán-Alvarez, E.3
  • 17
    • 33750622611 scopus 로고    scopus 로고
    • Challenges and opportunities in proteomics data analysis
    • DOI 10.1074/mcp.R600012-MCP200
    • Domon B, Aebersold R. 2006. Challenges and opportunities in proteomics data analysis. Mol Cell Proteomics 5:1921-26. (Pubitemid 44688200)
    • (2006) Molecular and Cellular Proteomics , vol.5 , Issue.10 , pp. 1921-1926
    • Domon, B.1    Aebersold, R.2
  • 18
    • 75249083774 scopus 로고    scopus 로고
    • Proteomic and physiological responses of leopard sharks (Triakis semifasciata) to salinity change
    • Dowd WW, Harris BN, Cech JJ Jr, Kültz D. 2010a. Proteomic and physiological responses of leopard sharks (Triakis semifasciata) to salinity change. J Exp Biol 213:210-24.
    • (2010) J Exp Biol , vol.213 , pp. 210-224
    • Dowd, W.W.1    Harris, B.N.2    Cech Jr., J.J.3    Kültz, D.4
  • 19
    • 77953214500 scopus 로고    scopus 로고
    • Compensatory proteome adjustments imply tissue-specific structural and metabolic reorganization following episodic hypoxia or anoxia in the epaulette shark (Hemiscyllium ocellatum
    • Dowd WW, Renshaw GM, Cech JJ Jr, Kültz D. 2010b. Compensatory proteome adjustments imply tissue-specific structural and metabolic reorganization following episodic hypoxia or anoxia in the epaulette shark (Hemiscyllium ocellatum). Physiol Genom 42:93-114.
    • (2010) Physiol Genom , vol.42 , pp. 93-114
    • Dowd, W.W.1    Renshaw, G.M.2    Cech Jr., J.J.3    Kültz, D.4
  • 20
    • 0043203327 scopus 로고    scopus 로고
    • Multiple hypothesis testing in microarray experiments
    • DOI 10.1214/ss/1056397487
    • Dudoit S, Shaffer JP, Boldrick JC. 2003. Multiple hypothesis testing in microarray experiments. Stat Sci 18:71-103. (Pubitemid 41461823)
    • (2003) Statistical Science , vol.18 , Issue.1 , pp. 71-103
    • Dudoit, S.1    Shaffer, J.P.2    Boldrick, J.C.3
  • 21
    • 0012572299 scopus 로고    scopus 로고
    • A variance-stabilizing transformation for gene-expression microarray data
    • Durbin BP, Hardin JS, Hawkins DM, Rocke DM. 2002. A variance-stabilizing transformation for gene-expression microarray data. Bioinformatics 18:S105-10. (Pubitemid 41185643)
    • (2002) Bioinformatics , vol.18 , Issue.SUPPL. 1
    • Durbin, B.P.1    Hardin, J.S.2    Hawkins, D.M.3    Rocke, D.M.4
  • 22
    • 78649537457 scopus 로고    scopus 로고
    • Phosphorylation events catalyzed by major cell signaling proteins differ in response to thermal and osmotic stress among native (Mytilus californianus and Mytilus trossulus) and invasive (Mytilus galloprovincialis) species of mussels
    • Evans TG, Somero GN. 2010. Phosphorylation events catalyzed by major cell signaling proteins differ in response to thermal and osmotic stress among native (Mytilus californianus and Mytilus trossulus) and invasive (Mytilus galloprovincialis) species of mussels. Physiol Biochem Zool 83:984-96.
    • (2010) Physiol Biochem Zool , vol.83 , pp. 984-996
    • Evans, T.G.1    Somero, G.N.2
  • 23
    • 84867812390 scopus 로고    scopus 로고
    • Latitudinal variation in protein expression after heat stress in the salt marsh mussel Geukensia demissa
    • Fields P, Cox K, Karch K. 2012. Latitudinal variation in protein expression after heat stress in the salt marsh mussel Geukensia demissa. Integr Comp Biol 52:636-47.
    • (2012) Integr Comp Biol , vol.52 , pp. 636-647
    • Fields, P.1    Cox, K.2    Karch, K.3
  • 24
    • 84858629618 scopus 로고    scopus 로고
    • Proteomic responses of blue mussel (Mytilus) congeners to temperature acclimation
    • Fields PA, Zuzow MJ, Tomanek L. 2012. Proteomic responses of blue mussel (Mytilus) congeners to temperature acclimation. J Exp Biol 215:1106-16.
    • (2012) J Exp Biol , vol.215 , pp. 1106-1116
    • Fields, P.A.1    Zuzow, M.J.2    Tomanek, L.3
  • 26
    • 10644230916 scopus 로고    scopus 로고
    • Current two-dimensional electrophoresis technology for proteomics
    • DOI 10.1002/pmic.200401031
    • Görg A, Weiss W, Dunn MJ. 2004. Current two-dimensional electrophoresis technology for proteomics. Proteomics 4:3665-85. (Pubitemid 39657447)
    • (2004) Proteomics , vol.4 , Issue.12 , pp. 3665-3685
    • Gorg, A.1    Weiss, W.2    Dunn, M.J.3
  • 27
    • 0036493224 scopus 로고    scopus 로고
    • A question of size: The eukaryotic proteome and the problems in defining it
    • Harrison PM, Kumar A, Lang N, Snyder M, Gerstein M. 2002. A question of size: The eukaryotic proteome and the problems in defining it. Nucleic Acids Res 30:1083-90. (Pubitemid 34679679)
    • (2002) Nucleic Acids Research , vol.30 , Issue.5 , pp. 1083-1090
    • Harrison, P.M.1    Kumar, A.2    Lang, N.3    Snyder, M.4    Gerstein, M.5
  • 29
    • 33644527950 scopus 로고    scopus 로고
    • The model organism as a system: Integrating 'omics' data sets
    • Joyce AR, Palsson BO. 2006. The model organism as a system: Integrating 'omics' data sets. Nat Rev Mol Cell Biol 7:198-210.
    • (2006) Nat Rev Mol Cell Biol , vol.7 , pp. 198-210
    • Joyce, A.R.1    Palsson, B.O.2
  • 31
    • 41149151769 scopus 로고    scopus 로고
    • Comparison of DIGE and post-stained gel electrophoresis with both traditional and SameSpots analysis for quantitative proteomics
    • DOI 10.1002/pmic.200700812
    • Karp NA, Feret R, Rubtsov DV, Lilley KS. 2008. Comparison of DIGE and post-stained gel electrophoresis with both traditional and SameSpots analysis for quantitative proteomics. Proteomics 8:948-60. (Pubitemid 351441434)
    • (2008) Proteomics , vol.8 , Issue.5 , pp. 948-960
    • Karp, N.A.1    Feret, R.2    Rubtsov, D.V.3    Lilley, K.S.4
  • 32
    • 13244258397 scopus 로고    scopus 로고
    • Application of partial least squares discriminant analysis to two-dimensional difference gel studies in expression proteomics
    • DOI 10.1002/pmic.200400881
    • Karp NA, Griffin JL, Lilley KS. 2005. Application of partial least squares discriminant analysis to two-dimensional difference gel studies in expression proteomics. Proteomics 5:81-90. (Pubitemid 40189640)
    • (2005) Proteomics , vol.5 , Issue.1 , pp. 81-90
    • Karp, N.A.1    Griffin, J.L.2    Lilley, K.S.3
  • 33
    • 34548409217 scopus 로고    scopus 로고
    • Experimental and statistical considerations to avoid false conclusions in proteomics studies using differential in-gel electophoresis
    • DOI 10.1074/mcp.M600274-MCP200
    • Karp NA, McCormick PS, Russell MR, Lilley KS. 2007. Experimental and statistical considerations to avoid false conclusions in proteomics studies using differential in-gel electrophoresis. Mol Cell Proteomics 6:1354-64. (Pubitemid 47365434)
    • (2007) Molecular and Cellular Proteomics , vol.6 , Issue.8 , pp. 1354-1364
    • Karp, N.A.1    McCormick, P.S.2    Russell, M.R.3    Lilley, K.S.4
  • 34
    • 14744284637 scopus 로고    scopus 로고
    • Multifaceted roles of glycolytic enzymes
    • DOI 10.1016/j.tibs.2005.01.005
    • Kim JW, Dang CV. 2005. Multifaceted roles of glycolytic enzymes. Trends Biochem Sci 30:142-50. (Pubitemid 40332530)
    • (2005) Trends in Biochemical Sciences , vol.30 , Issue.3 , pp. 142-150
    • Kim, J.-W.1    Dang, C.V.2
  • 35
    • 34249708873 scopus 로고    scopus 로고
    • Functional genomics and proteomics of the cellular osmotic stress response in 'non-model' organisms
    • DOI 10.1242/jeb.000141
    • Kültz D, Fiol D, Valkova N, Gomez-Jimenez S, Chan SY, Lee J. 2007. Functional genomics and proteomics of the cellular osmotic stress response in 'non-model' organisms. J Exp Biol 210:1593-601. (Pubitemid 46841964)
    • (2007) Journal of Experimental Biology , vol.210 , Issue.9 , pp. 1593-1601
    • Kultz, D.1    Fiol, D.2    Valkova, N.3    Gomez-Jimenez, S.4    Chan, S.Y.5    Lee, J.6
  • 36
    • 0141855283 scopus 로고    scopus 로고
    • Megavariate data analysis of mass spectrometric proteomics data using latent variable projection method
    • DOI 10.1002/pmic.200300515
    • Lee KR, Lin X, Park DC, Eslava S. 2003. Megavariate data analysis of mass spectrometric proteomics data using latent variable projection method. Proteomics 3:1680-6. (Pubitemid 37129812)
    • (2003) Proteomics , vol.3 , Issue.9 , pp. 1680-1686
    • Lee, K.R.1    Lin, X.2    Park, D.C.3    Eslava, S.4
  • 38
    • 77957850989 scopus 로고    scopus 로고
    • Transcriptomic responses to heat stress in invasive and native blue mussels (genus Mytilus): Molecular correlates of invasive success
    • Lockwood BL, Sanders JG, Somero GN. 2010. Transcriptomic responses to heat stress in invasive and native blue mussels (genus Mytilus): Molecular correlates of invasive success. J Exp Biol 213:3548-58.
    • (2010) J Exp Biol , vol.213 , pp. 3548-3558
    • Lockwood, B.L.1    Sanders, J.G.2    Somero, G.N.3
  • 39
    • 79955083470 scopus 로고    scopus 로고
    • Invasive and native blue mussels (genus Mytilus) on the California coast: The role of physiology in a biological invasion
    • Lockwood BL, Somero GN. 2011a. Invasive and native blue mussels (genus Mytilus) on the California coast: The role of physiology in a biological invasion. J Exp Mar Biol Ecol. 400:167-74.
    • (2011) J Exp Mar Biol Ecol , vol.400 , pp. 167-174
    • Lockwood, B.L.1    Somero, G.N.2
  • 40
    • 78751653787 scopus 로고    scopus 로고
    • Transcriptomic responses to salinity stress in invasive and native blue mussels (genus Mytilus
    • Lockwood BL, Somero GN. 2011b. Transcriptomic responses to salinity stress in invasive and native blue mussels (genus Mytilus). Mol Ecol 20:517-29.
    • (2011) Mol Ecol , vol.20 , pp. 517-529
    • Lockwood, B.L.1    Somero, G.N.2
  • 41
    • 57449099068 scopus 로고    scopus 로고
    • Precision proteomics: The case for high resolution and high mass accuracy
    • Mann M, Kelleher NL. 2008. Precision proteomics: The case for high resolution and high mass accuracy. Proc Natl Acad Sci USA 105:18132-8.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 18132-18138
    • Mann, M.1    Kelleher, N.L.2
  • 42
    • 32244443103 scopus 로고    scopus 로고
    • Multivariate statistical tools to applied to the characterization of the proteomic profiles of two human lymphoma cell lines by two-dimensional gel electrophoresis
    • DOI 10.1002/elps.200500323
    • Marengo E, Robotti E, Bobba M, Liparota MC, Rustichelli C, Zamò A, Chilosi M, Righetti PG. 2006. Multivariate statistical tools applied to the characterization of the proteomic profiles of two human lymphoma cell lines by two-dimensional gel electrophoresis. Electrophoresis 27:484-94. (Pubitemid 43210516)
    • (2006) Electrophoresis , vol.27 , Issue.2 , pp. 484-494
    • Marengo, E.1    Robotti, E.2    Bobba, M.3    Liparota, M.C.4    Rustichelli, C.5    Zamo, A.6    Chilosi, M.7    Righetti, P.G.8
  • 43
    • 77953685523 scopus 로고    scopus 로고
    • Environmentally relevant exposure to 17-ethinylestradiol affects the telencephalic proteome of male fathead minnows
    • Martyniuk CJ, Kroll KJ, Doperalski NJ, Barber DS, Denslow ND. 2010a. Environmentally relevant exposure to 17-ethinylestradiol affects the telencephalic proteome of male fathead minnows. Aquat Toxicol 98:344-53.
    • (2010) Aquat Toxicol , vol.98 , pp. 344-353
    • Martyniuk, C.J.1    Kroll, K.J.2    Doperalski, N.J.3    Barber, D.S.4    Denslow, N.D.5
  • 44
    • 77955880524 scopus 로고    scopus 로고
    • Genomic and proteomic responsesto environmentally relevant exposures to dieldrin: Indicators of neurodegeneration?
    • Martyniuk CJ, Kroll KJ, Doperalski NJ, Barber DS, Denslow ND. 2010b. Genomic and proteomic responsesto environmentally relevant exposures to dieldrin: Indicators of neurodegeneration? Toxicol Sci 117:190-9.
    • (2010) Toxicol Sci , vol.117 , pp. 190-199
    • Martyniuk, C.J.1    Kroll, K.J.2    Doperalski, N.J.3    Barber, D.S.4    Denslow, N.D.5
  • 45
    • 84864608542 scopus 로고    scopus 로고
    • Exploring androgen-regulated pathways in teleost fish using transcriptomics and proteomics
    • Martyniuk C, Denslow N. 2012. Exploring androgen-regulated pathways in teleost fish using transcriptomics and proteomics. Integr Comp Biol 52:695-704.
    • (2012) Integr Comp Biol , vol.52 , pp. 695-704
    • Martyniuk, C.1    Denslow, N.2
  • 46
    • 25144494760 scopus 로고    scopus 로고
    • Prediction error estimation: A comparison of resampling methods
    • DOI 10.1093/bioinformatics/bti499
    • Molinaro AM, Simon R, Pfeiffer RM. 2005. Prediction error estimation: A comparison of resampling methods. Bioinformatics 21:3301-7. (Pubitemid 41418445)
    • (2005) Bioinformatics , vol.21 , Issue.15 , pp. 3301-3307
    • Molinaro, A.M.1    Simon, R.2    Pfeiffer, R.M.3
  • 48
    • 79951914345 scopus 로고    scopus 로고
    • How many proteins are missed in quantitative proteomics based on MS/MS sequencing methods?
    • Mulvey C, Thur B, Crawford M, Godovac-Zimmermann J. 2010. How many proteins are missed in quantitative proteomics based on MS/MS sequencing methods? Proteomics Insights 3:61.
    • (2010) Proteomics Insights , vol.3 , pp. 61
    • Mulvey, C.1    Thur, B.2    Crawford, M.3    Godovac-Zimmermann, J.4
  • 49
    • 75449099314 scopus 로고    scopus 로고
    • Laplacian linear discriminant analysis approach to unsupervised feature selection
    • Niijima S, Okuno Y. 2009. Laplacian linear discriminant analysis approach to unsupervised feature selection. IEEE ACM Trans Comput Biol Bioinformatics 6:605-14.
    • (2009) IEEE ACM Trans Comput Biol Bioinformatics , vol.6 , pp. 605-614
    • Niijima, S.1    Okuno, Y.2
  • 50
    • 70350228969 scopus 로고    scopus 로고
    • Performance of PLS regression coefficients in selecting variables for each response of a multivariate PLS for omics-Type data
    • Palermo G, Piraino P, Zucht H-D. 2009. Performance of PLS regression coefficients in selecting variables for each response of a multivariate PLS for omics-Type data. Adv Appl Bioinform Chem 2:57-70.
    • (2009) Adv Appl Bioinform Chem , vol.2 , pp. 57-70
    • Palermo, G.1    Piraino, P.2    Zucht, H.-D.3
  • 52
    • 0038620211 scopus 로고    scopus 로고
    • Prediction of clinical outcome with microarray data: A partial least squares discriminant analysis (PLS-DA) approach
    • Pérez-Enciso M, Tenenhaus M. 2003. Prediction of clinical outcome with microarray data: A partial least squares discriminant analysis (PLS-DA) approach. Hum Genet 112:581-92. (Pubitemid 36869053)
    • (2003) Human Genetics , vol.112 , Issue.5-6 , pp. 581-592
    • Perez-Enciso, M.1    Tenenhaus, M.2
  • 54
    • 77957220211 scopus 로고    scopus 로고
    • Two-dimensional gel electrophoresis in proteomics: Past, present and future
    • Rabilloud T, Chevallet M, Luche S, Lelong C. 2010. Two-dimensional gel electrophoresis in proteomics: Past, present and future. J Proteomics 73:2064-77.
    • (2010) J Proteomics , vol.73 , pp. 2064-2077
    • Rabilloud, T.1    Chevallet, M.2    Luche, S.3    Lelong, C.4
  • 55
    • 9244226546 scopus 로고    scopus 로고
    • Design and analysis of experiments with high throughput biological assay data
    • DOI 10.1016/j.semcdb.2004.09.007, PII S108495210400093X
    • Rocke DM. 2004. Design and analysis of experiments with high throughput biological assay data. Sem Cell Dev Biol 15:703-13. (Pubitemid 39550250)
    • (2004) Seminars in Cell and Developmental Biology , vol.15 , Issue.6 SPEC. ISS. , pp. 703-713
    • Rocke, D.M.1
  • 56
    • 0037606155 scopus 로고    scopus 로고
    • Approximate variance-stabilizing transformations for gene-expression microarray data
    • DOI 10.1093/bioinformatics/btg107
    • Rocke DM, Durbin B. 2003. Approximate variance-stabilizing transformations for gene-expression microarray data. Bioinformatics 19:966-72. (Pubitemid 36675817)
    • (2003) Bioinformatics , vol.19 , Issue.8 , pp. 966-972
    • Rocke, D.M.1    Durbin, B.2
  • 57
    • 27744446046 scopus 로고    scopus 로고
    • A method for detection of differential gene expression in the presence of inter-individual variability in response
    • DOI 10.1093/bioinformatics/bti667
    • Rocke DM, Goldberg Z, Schweitert C, Santana A. 2005. A method for detection of differential gene expression in the presence of inter-individual variability in response. Bioinformatics 21:3990-2. (Pubitemid 41631839)
    • (2005) Bioinformatics , vol.21 , Issue.21 , pp. 3990-3992
    • Rocke, D.M.1    Goldberg, Z.2    Schweitert, C.3    Santana, A.4
  • 58
    • 0025031812 scopus 로고
    • No adjustments are needed for multiple comparisons
    • Rothman KJ. 1990. No adjustments are needed for multiple comparisons. Epidemiology 1:43-6. (Pubitemid 20255621)
    • (1990) Epidemiology , vol.1 , Issue.1 , pp. 43-46
    • Rothman, K.J.1
  • 59
    • 58149102755 scopus 로고    scopus 로고
    • Heat stress in the intertidal: Comparing survival and growth of an invasive and native mussel under a variety of thermal conditions
    • Schneider KR. 2008. Heat stress in the intertidal: Comparing survival and growth of an invasive and native mussel under a variety of thermal conditions. Biol Bull 215:253-64.
    • (2008) Biol Bull , vol.215 , pp. 253-264
    • Schneider, K.R.1
  • 60
    • 34347373650 scopus 로고    scopus 로고
    • Spatial variability in habitat temperature may drive patterns of selection between an invasive and native mussel species
    • DOI 10.3354/meps339157
    • Schneider KR, Helmuth B. 2007. Spatial variability in habitat temperature may drive patterns of selection between an invasive and native mussel species. Mar Ecol Progr Ser 339:157-67. (Pubitemid 47025327)
    • (2007) Marine Ecology Progress Series , vol.339 , pp. 157-167
    • Schneider, K.R.1    Helmuth, B.2
  • 61
    • 63649164565 scopus 로고    scopus 로고
    • Mechanisms of invasion resistance: Competition among intertidal mussels promotes establishment of invasive species and displacement of native species
    • Shinen JS, Morgan SG. 2009. Mechanisms of invasion resistance: Competition among intertidal mussels promotes establishment of invasive species and displacement of native species. Mar Ecol Progr Ser 383:187-97.
    • (2009) Mar Ecol Progr Ser , vol.383 , pp. 187-197
    • Shinen, J.S.1    Morgan, S.G.2
  • 62
    • 77953721207 scopus 로고    scopus 로고
    • A proteomic analysis of green and white sturgeon larvae exposed to heat stress and selenium
    • Silvestre F, Linares-Casenave J, Doroshov SI, Kültz D. 2010a. A proteomic analysis of green and white sturgeon larvae exposed to heat stress and selenium. Sci Total Environ 408:3176-88.
    • (2010) Sci Total Environ , vol.408 , pp. 3176-3188
    • Silvestre, F.1    Linares-Casenave, J.2    Doroshov, S.I.3    Kültz, D.4
  • 63
    • 77956650029 scopus 로고    scopus 로고
    • A differential proteomic approach to assess the effects of chemotherapeutics and production management strategy on giant tiger shrimp penaeus monodon
    • Silvestre F, Tu HT, Bernard A, Dorts J, Dieu M, Raes M, Phuong NT, Kestemont P. 2010b. A differential proteomic approach to assess the effects of chemotherapeutics and production management strategy on giant tiger shrimp Penaeus monodon. Comp Biochem Physiol 5D:227-33.
    • (2010) Comp Biochem Physiol , vol.5 D , pp. 227-233
    • Silvestre, F.1    Tu, H.T.2    Bernard, A.3    Dorts, J.4    Dieu, M.5    Raes, M.6    Phuong, N.T.7    Kestemont, P.8
  • 67
    • 70349883811 scopus 로고    scopus 로고
    • Seasonal and latitudinal acclimatization of cardiac transcriptome responses to thermal stress in porcelain crabs
    • Stillman JH, Tagmount A. 2009. Seasonal and latitudinal acclimatization of cardiac transcriptome responses to thermal stress in porcelain crabs. Petrolisthes cinctipes Mol Ecol 18:4206-26.
    • (2009) Petrolisthes cinctipes Mol Ecol , vol.18 , pp. 4206-4226
    • Stillman, J.H.1    Tagmount, A.2
  • 68
    • 0036020892 scopus 로고    scopus 로고
    • A direct approach to false discovery rates
    • Storey JD. 2002. A direct approach to false discovery rates. J R Statist Soc B 64:479-98.
    • (2002) J R Statist Soc B , vol.64 , pp. 479-498
    • Storey, J.D.1
  • 70
    • 78751584111 scopus 로고    scopus 로고
    • Environmental proteomics: Changes in the proteome of marine organisms in response to environmental stress, pollutants, infection, symbiosis, and development
    • Tomanek L. 2011. Environmental proteomics: Changes in the proteome of marine organisms in response to environmental stress, pollutants, infection, symbiosis, and development. Annu Rev Mar Sci 3:373-99.
    • (2011) Annu Rev Mar Sci , vol.3 , pp. 373-399
    • Tomanek, L.1
  • 71
    • 77954932614 scopus 로고    scopus 로고
    • The proteomic response of the mussel congeners Mytilus galloprovincialis and M. trossulus to acute heat stress: Implications for thermal tolerance limits and metabolic costs of thermal stress
    • Tomanek L, Zuzow MJ. 2010. The proteomic response of the mussel congeners Mytilus galloprovincialis and M. trossulus to acute heat stress: Implications for thermal tolerance limits and metabolic costs of thermal stress. J Exp Biol 213:3559-74.
    • (2010) J Exp Biol , vol.213 , pp. 3559-3574
    • Tomanek, L.1    Zuzow, M.J.2
  • 72
    • 33750362838 scopus 로고    scopus 로고
    • Statistics for proteomics: A review of tools for analyzing experimental data
    • DOI 10.1002/pmic.200600554
    • Urfer W, Grzegorczyk M, Jung K. 2006. Statistics for proteomics: A review of tools for analyzing experimental data. Proteomics 6:48-55. (Pubitemid 44625769)
    • (2006) Proteomics , vol.1 , Issue.1-2 SUPPL. , pp. 48-55
    • Urfer, W.1    Grzegorczyk, M.2    Jung, K.3
  • 73
    • 79960158519 scopus 로고    scopus 로고
    • Outlier-based differential expression analysis in proteomics studies
    • Vuong H, Shedden K, Liu Y, Lubman DM. 2011. Outlier-based differential expression analysis in proteomics studies. J Proteomics Bioinform 4:116-22.
    • (2011) J Proteomics Bioinform , vol.4 , pp. 116-122
    • Vuong, H.1    Shedden, K.2    Liu, Y.3    Lubman, D.M.4
  • 74
    • 34249774309 scopus 로고    scopus 로고
    • Reconstructing gene regulatory networks with Bayesian networks by combining expression data with multiple sources of prior knowledge
    • Werhli AV, Husmeier D. 2007. Reconstructing gene regulatory networks with Bayesian networks by combining expression data with multiple sources of prior knowledge. Stat Appl Genet Mol Biol 6:15.
    • (2007) Stat Appl Genet Mol Biol , vol.6 , pp. 15
    • Werhli, A.V.1    Husmeier, D.2


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