-
1
-
-
17444424295
-
Serial SimCoal: a population genetics model for data from multiple populations and points in time
-
Anderson C.N.K., Ramakrishnan U., Chan Y.L., Hadly E.A. Serial SimCoal: a population genetics model for data from multiple populations and points in time. Bioinformatics 2005, 21:1733-1734.
-
(2005)
Bioinformatics
, vol.21
, pp. 1733-1734
-
-
Anderson, C.N.K.1
Ramakrishnan, U.2
Chan, Y.L.3
Hadly, E.A.4
-
3
-
-
0032900678
-
Median-joining networks for inferring intraspecific phylogenies
-
Bandelt H.J., Forster P., Röhl A. Median-joining networks for inferring intraspecific phylogenies. Mol. Biol. Evol. 1999, 16:37-48.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 37-48
-
-
Bandelt, H.J.1
Forster, P.2
Röhl, A.3
-
4
-
-
77958477282
-
Phylogeography and historical demography of the Neotropical stingless bee Melipona quadrifasciata (Hymenoptera, Apidae): incongruence between morphology and mitochondrial DNA
-
Batalha-Filho H., Waldschmidt A.M., Campos L.A.O., Tavares M.G., Fernandes-Salomão T.M. Phylogeography and historical demography of the Neotropical stingless bee Melipona quadrifasciata (Hymenoptera, Apidae): incongruence between morphology and mitochondrial DNA. Apidologie 2010, 41:534-547.
-
(2010)
Apidologie
, vol.41
, pp. 534-547
-
-
Batalha-Filho, H.1
Waldschmidt, A.M.2
Campos, L.A.O.3
Tavares, M.G.4
Fernandes-Salomão, T.M.5
-
5
-
-
0037022035
-
South and southeast Brazilian grasslands during Late Quaternary times: a synthesis
-
Behling H. South and southeast Brazilian grasslands during Late Quaternary times: a synthesis. Palaeogeogr. Palaeoclimatol. Palaeoecol. 2002, 177:19-27.
-
(2002)
Palaeogeogr. Palaeoclimatol. Palaeoecol.
, vol.177
, pp. 19-27
-
-
Behling, H.1
-
6
-
-
0031394036
-
Evidence of dry and cold climatic conditions at glacial times in tropical southeastern Brazil
-
Behling H., Lichte M. Evidence of dry and cold climatic conditions at glacial times in tropical southeastern Brazil. Quatern. Res. 1997, 48:348-358.
-
(1997)
Quatern. Res.
, vol.48
, pp. 348-358
-
-
Behling, H.1
Lichte, M.2
-
7
-
-
33847692376
-
Late Quaternary vegetation, biodiversity and fire dynamics on the southern Brazilian highland and their implication for conservation and management of modern Araucaria forest and grassland ecosystems
-
Behling H., Pillar V.D.P. Late Quaternary vegetation, biodiversity and fire dynamics on the southern Brazilian highland and their implication for conservation and management of modern Araucaria forest and grassland ecosystems. Philos. Trans. R. Soc. B 2007, 362:243-251.
-
(2007)
Philos. Trans. R. Soc. B
, vol.362
, pp. 243-251
-
-
Behling, H.1
Pillar, V.D.P.2
-
8
-
-
33744466013
-
Serial coalescent simulations suggest a weak genealogical relationship between Etruscans and modern Tuscans
-
Belle E.M., Ramakrishnan U., Mountain J.L., Barbujani G. Serial coalescent simulations suggest a weak genealogical relationship between Etruscans and modern Tuscans. Proc. Natl. Acad. Sci. USA 2006, 103:8012-8017.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 8012-8017
-
-
Belle, E.M.1
Ramakrishnan, U.2
Mountain, J.L.3
Barbujani, G.4
-
9
-
-
84863403852
-
Population history of the Hispaniolan hutia Plagiodontia aedium (Rodentia: Capromyidae): testing the model of ancient differentiation on a geotectonically complex Caribbean island
-
Brace S., Barnes I., Powell A., Pearson R., Woolaver L.G., Thomas M.G., Turvey S.T. Population history of the Hispaniolan hutia Plagiodontia aedium (Rodentia: Capromyidae): testing the model of ancient differentiation on a geotectonically complex Caribbean island. Mol. Ecol. 2012, 21:2239-2253.
-
(2012)
Mol. Ecol.
, vol.21
, pp. 2239-2253
-
-
Brace, S.1
Barnes, I.2
Powell, A.3
Pearson, R.4
Woolaver, L.G.5
Thomas, M.G.6
Turvey, S.T.7
-
10
-
-
0002379806
-
Ice-ages forest refuges and evolution in the Neotropics: correlation of paleoclimatological, geomorphological, and pedological data with modern biological endemism
-
Brown K.S., Ab'Saber A.N. Ice-ages forest refuges and evolution in the Neotropics: correlation of paleoclimatological, geomorphological, and pedological data with modern biological endemism. Paleoclimas 1979, 5:1-30.
-
(1979)
Paleoclimas
, vol.5
, pp. 1-30
-
-
Brown, K.S.1
Ab'Saber, A.N.2
-
11
-
-
33646167864
-
A simple and robust statistical test for detecting the presence of recombination
-
Bruen T.C., Philippe H., Bryant D. A simple and robust statistical test for detecting the presence of recombination. Genetics 2006, 172:2665-2681.
-
(2006)
Genetics
, vol.172
, pp. 2665-2681
-
-
Bruen, T.C.1
Philippe, H.2
Bryant, D.3
-
12
-
-
0000499332
-
Single-locus and multilocus DNA fingerprinting
-
IRL Press, New York, A.R. Hoelzel (Ed.)
-
Bruford M.W., Hanotte O., Brookfield J.F.Y., Burke T. Single-locus and multilocus DNA fingerprinting. Molecular Genetic Analysis of Populations-A Practical Approach 1992, 287-336. IRL Press, New York. A.R. Hoelzel (Ed.).
-
(1992)
Molecular Genetic Analysis of Populations-A Practical Approach
, pp. 287-336
-
-
Bruford, M.W.1
Hanotte, O.2
Brookfield, J.F.Y.3
Burke, T.4
-
13
-
-
34447638725
-
The rise and fall of the refugial hypothesis of Amazonian speciation: a paleoecological perspective
-
Bush M.B., de Oliveira P.E. The rise and fall of the refugial hypothesis of Amazonian speciation: a paleoecological perspective. Biot. Neotrop. 2006, 6:1-17.
-
(2006)
Biot. Neotrop.
, vol.6
, pp. 1-17
-
-
Bush, M.B.1
de Oliveira, P.E.2
-
14
-
-
34247332662
-
Phylogeography of Xiphorhynchus fuscus (Passeriformes, Dendrocolaptidae): vicariance and recent demographic expansion in southern Atlantic forest
-
Cabanne G.S., Santos F.R., Miyaki C.Y. Phylogeography of Xiphorhynchus fuscus (Passeriformes, Dendrocolaptidae): vicariance and recent demographic expansion in southern Atlantic forest. Biol. J. Linn. Soc. 2007, 91:73-84.
-
(2007)
Biol. J. Linn. Soc.
, vol.91
, pp. 73-84
-
-
Cabanne, G.S.1
Santos, F.R.2
Miyaki, C.Y.3
-
15
-
-
56549112711
-
Nuclear and mitochondrial phylogeography of the Atlantic forest endemic Xiphorhynchus fuscus (Aves: Dendrocolaptidae): biogeography and systematic implications
-
Cabanne G.S., D'Horta F.M., Sari E.H.R., Santos F.R., Miyaki C.Y. Nuclear and mitochondrial phylogeography of the Atlantic forest endemic Xiphorhynchus fuscus (Aves: Dendrocolaptidae): biogeography and systematic implications. Mol. Phylogenet. Evol. 2008, 49:760-773.
-
(2008)
Mol. Phylogenet. Evol.
, vol.49
, pp. 760-773
-
-
Cabanne, G.S.1
D'Horta, F.M.2
Sari, E.H.R.3
Santos, F.R.4
Miyaki, C.Y.5
-
16
-
-
79960432634
-
Evolution of Dendrocolaptes platyrostris (Aves: Furnariidae) between the South American open vegetation corridor and the Atlantic forest
-
Cabanne G.S., D'Horta F.M., Meyer D., Silva J.M.C., Miyaki C.Y. Evolution of Dendrocolaptes platyrostris (Aves: Furnariidae) between the South American open vegetation corridor and the Atlantic forest. Biol. J. Linn. Soc. 2011, 103:801-820.
-
(2011)
Biol. J. Linn. Soc.
, vol.103
, pp. 801-820
-
-
Cabanne, G.S.1
D'Horta, F.M.2
Meyer, D.3
Silva, J.M.C.4
Miyaki, C.Y.5
-
17
-
-
45249117221
-
Historical climate modeling predicts patterns of current biodiversity in the Brazilian Atlantic forest
-
Carnaval A.C., Moritz C. Historical climate modeling predicts patterns of current biodiversity in the Brazilian Atlantic forest. J. Biogeogr. 2008, 35:1187-1201.
-
(2008)
J. Biogeogr.
, vol.35
, pp. 1187-1201
-
-
Carnaval, A.C.1
Moritz, C.2
-
18
-
-
59849093347
-
Stability predicts genetic diversity in the Brazilian Atlantic forest hotspot
-
Carnaval A.C., Hickerson M.J., Haddad C.F.B., Rodrigues M.T., Moritz C. Stability predicts genetic diversity in the Brazilian Atlantic forest hotspot. Science 2009, 323:785-789.
-
(2009)
Science
, vol.323
, pp. 785-789
-
-
Carnaval, A.C.1
Hickerson, M.J.2
Haddad, C.F.B.3
Rodrigues, M.T.4
Moritz, C.5
-
19
-
-
33646483919
-
Bayesian estimation of the timing and severity of a population bottleneck from ancient DNA
-
Chan Y.L., Anderson C.N.K., Hadly E.A. Bayesian estimation of the timing and severity of a population bottleneck from ancient DNA. PLoS Genet. 2006, 2:451-460.
-
(2006)
PLoS Genet.
, vol.2
, pp. 451-460
-
-
Chan, Y.L.1
Anderson, C.N.K.2
Hadly, E.A.3
-
20
-
-
0033957763
-
Amazonian and Neotropical plant communities on glacial time scales: the failure of the aridity and refuge hypothesis
-
Colinvaux P.A., de Oliveira P.E., Bush M.B. Amazonian and Neotropical plant communities on glacial time scales: the failure of the aridity and refuge hypothesis. Quaternary Sci. Rev. 2000, 19:141-169.
-
(2000)
Quaternary Sci. Rev.
, vol.19
, pp. 141-169
-
-
Colinvaux, P.A.1
de Oliveira, P.E.2
Bush, M.B.3
-
21
-
-
33747078134
-
Bayesian identification of admixture events using multilocus molecular markers
-
Corander J., Marttinen P. Bayesian identification of admixture events using multilocus molecular markers. Mol. Ecol. 2006, 15:2833-2843.
-
(2006)
Mol. Ecol.
, vol.15
, pp. 2833-2843
-
-
Corander, J.1
Marttinen, P.2
-
22
-
-
62349132559
-
Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations
-
Corander J., Marttinen P., Siren J., Tang J. Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations. BMC Bioinformatics 2008, 9:539.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 539
-
-
Corander, J.1
Marttinen, P.2
Siren, J.3
Tang, J.4
-
23
-
-
0037256036
-
The historical bridge between the Amazon and the Atlantic forest of Brazil: a study of molecular phylogeography with small mammals
-
Costa L.P. The historical bridge between the Amazon and the Atlantic forest of Brazil: a study of molecular phylogeography with small mammals. J. Biogeogr. 2003, 30:71-86.
-
(2003)
J. Biogeogr.
, vol.30
, pp. 71-86
-
-
Costa, L.P.1
-
24
-
-
79954588284
-
The genetic effects of Late Quaternary climatic changes over a tropical latitudinal gradient: diversification of an Atlantic forest passerine
-
D'Horta F., Cabanne G.S., Meyer D., Miyaki C.Y. The genetic effects of Late Quaternary climatic changes over a tropical latitudinal gradient: diversification of an Atlantic forest passerine. Mol. Ecol. 2011, 20:1932-1935.
-
(2011)
Mol. Ecol.
, vol.20
, pp. 1932-1935
-
-
D'Horta, F.1
Cabanne, G.S.2
Meyer, D.3
Miyaki, C.Y.4
-
25
-
-
38649110663
-
BEAST: Bayesian evolutionary analysis by sampling trees
-
Drummond A.J., Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 2007, 7:214.
-
(2007)
BMC Evol. Biol.
, vol.7
, pp. 214
-
-
Drummond, A.J.1
Rambaut, A.2
-
26
-
-
0031978181
-
Base-calling of automated sequencer traces using phred. II. Error probabilities
-
Ewing B., Green P. Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 1998, 8:186-194.
-
(1998)
Genome Res.
, vol.8
, pp. 186-194
-
-
Ewing, B.1
Green, P.2
-
27
-
-
0031955518
-
Base-calling of automated sequencer traces using phred. I. Accuracy assessment
-
Ewing B., Hillier L., Wendl M.C., Green P. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 1998, 8:175-185.
-
(1998)
Genome Res.
, vol.8
, pp. 175-185
-
-
Ewing, B.1
Hillier, L.2
Wendl, M.C.3
Green, P.4
-
28
-
-
0026681074
-
Analyses of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data
-
Excoffier L., Smouse P.E., Quattro J.M. Analyses of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 1992, 131:479-491.
-
(1992)
Genetics
, vol.131
, pp. 479-491
-
-
Excoffier, L.1
Smouse, P.E.2
Quattro, J.M.3
-
29
-
-
85007110786
-
Arlequin ver. 3.0: an integrated software package for population genetics data analysis
-
(online)
-
Excoffier L., Laval G., Schneider S. Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evol. Bioinform. 2005, 1:47-50. (online).
-
(2005)
Evol. Bioinform.
, vol.1
, pp. 47-50
-
-
Excoffier, L.1
Laval, G.2
Schneider, S.3
-
30
-
-
65349191801
-
Genetic evidence of geographical groups among Neanderthals
-
Fabre V., Condemi S., Degioanni A. Genetic evidence of geographical groups among Neanderthals. PLoS One 2009, 4:e5151.
-
(2009)
PLoS One
, vol.4
-
-
Fabre, V.1
Condemi, S.2
Degioanni, A.3
-
31
-
-
0030034795
-
A hidden Markov model approach to variation among sites in rate of evolution
-
Felsenstein J., Churchill G.A. A hidden Markov model approach to variation among sites in rate of evolution. Mol. Biol. Evol. 1996, 13:93-104.
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 93-104
-
-
Felsenstein, J.1
Churchill, G.A.2
-
32
-
-
79959656885
-
Bonobos fall within the genomic variation of chimpanzees
-
Fischer A., Prüfer K., Good J.M., Halbwax M., Wiebe V., André C., Atencia R., Mugisha L., Ptak S.E., Pääbo S. Bonobos fall within the genomic variation of chimpanzees. PLoS One 2011, 6:e21605.
-
(2011)
PLoS One
, vol.6
-
-
Fischer, A.1
Prüfer, K.2
Good, J.M.3
Halbwax, M.4
Wiebe, V.5
André, C.6
Atencia, R.7
Mugisha, L.8
Ptak, S.E.9
Pääbo, S.10
-
33
-
-
67649861387
-
Geographical variation in genetic structure of an Atlantic coastal forest frog reveals regional differences in habitat stability
-
Fitzpatrick S.W., Brasileiro C.A., Haddad C.F., Zamudio K.R. Geographical variation in genetic structure of an Atlantic coastal forest frog reveals regional differences in habitat stability. Mol. Ecol. 2009, 18:2877-2896.
-
(2009)
Mol. Ecol.
, vol.18
, pp. 2877-2896
-
-
Fitzpatrick, S.W.1
Brasileiro, C.A.2
Haddad, C.F.3
Zamudio, K.R.4
-
34
-
-
0030821992
-
Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection
-
Fu Y.X. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 1997, 147:915-925.
-
(1997)
Genetics
, vol.147
, pp. 915-925
-
-
Fu, Y.X.1
-
35
-
-
77950899010
-
Status do hotspot Mata Atlântica: uma síntese
-
Galindo-Leal, C., Câmara, I.G. (Eds.), Mata Atlântica: Biodiversidade, Ameaças e Perspectivas. Conservação Internacional, Belo Horizonte
-
Galindo-Leal, C., Câmara, I.G., 2005. Status do hotspot Mata Atlântica: uma síntese. In: Galindo-Leal, C., Câmara, I.G. (Eds.), Mata Atlântica: Biodiversidade, Ameaças e Perspectivas. Conservação Internacional, Belo Horizonte, pp. 3-11.
-
(2005)
, pp. 3-11
-
-
Galindo-Leal, C.1
Câmara, I.G.2
-
36
-
-
77952303302
-
Inferring genealogical processes from patterns of bronze-age and modern DNA variation in Sardinia
-
Ghirotto S., Mona S., Benazzo A., Paparazzo F., Caramelli D., Barbujani G. Inferring genealogical processes from patterns of bronze-age and modern DNA variation in Sardinia. Mol. Biol. Evol. 2010, 27:875-886.
-
(2010)
Mol. Biol. Evol.
, vol.27
, pp. 875-886
-
-
Ghirotto, S.1
Mona, S.2
Benazzo, A.3
Paparazzo, F.4
Caramelli, D.5
Barbujani, G.6
-
37
-
-
0031955116
-
Consed: a graphical tool for sequence finishing
-
Gordon D., Abajian C., Green P. Consed: a graphical tool for sequence finishing. Genome Res. 1998, 8:195-202.
-
(1998)
Genome Res.
, vol.8
, pp. 195-202
-
-
Gordon, D.1
Abajian, C.2
Green, P.3
-
38
-
-
33750206772
-
Phylogeography of the Bothrops jararaca complex (Serpentes: Viperidae): past fragmentation and island colonization in the Brazilian Atlantic forest
-
Grazziotin F.G., Monzel M., Echeverrigaray S., Bonatto S.L. Phylogeography of the Bothrops jararaca complex (Serpentes: Viperidae): past fragmentation and island colonization in the Brazilian Atlantic forest. Mol. Ecol. 2006, 15:3969-3982.
-
(2006)
Mol. Ecol.
, vol.15
, pp. 3969-3982
-
-
Grazziotin, F.G.1
Monzel, M.2
Echeverrigaray, S.3
Bonatto, S.L.4
-
39
-
-
1642287051
-
Speciation in Amazonian forest birds
-
Haffer J. Speciation in Amazonian forest birds. Science 1969, 165:131-137.
-
(1969)
Science
, vol.165
, pp. 131-137
-
-
Haffer, J.1
-
40
-
-
60549111699
-
Bayesian inference of population size history from multiple loci
-
Heled J., Drummond A.J. Bayesian inference of population size history from multiple loci. BMC Evol. Biol. 2008, 8:289.
-
(2008)
BMC Evol. Biol.
, vol.8
, pp. 289
-
-
Heled, J.1
Drummond, A.J.2
-
41
-
-
33645076038
-
Comparative phylogeographic summary statistics for testing simultaneous vicariance
-
Hickerson M.J., Dolman G., Moritz C. Comparative phylogeographic summary statistics for testing simultaneous vicariance. Mol. Ecol. 2006, 15:209-223.
-
(2006)
Mol. Ecol.
, vol.15
, pp. 209-223
-
-
Hickerson, M.J.1
Dolman, G.2
Moritz, C.3
-
42
-
-
0027968068
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Higgins D., Thompson J., Gibson T., Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22:4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Higgins, D.1
Thompson, J.2
Gibson, T.3
Thompson, J.D.4
Higgins, D.G.5
Gibson, T.J.6
-
43
-
-
30744470609
-
Application of phylogenetic networks in evolutionary studies
-
Huson D.H., Bryant D. Application of phylogenetic networks in evolutionary studies. Mol. Biol. Evol. 2006, 23:254-267.
-
(2006)
Mol. Biol. Evol.
, vol.23
, pp. 254-267
-
-
Huson, D.H.1
Bryant, D.2
-
44
-
-
70450281762
-
Statistical phylogeography
-
Knowles L.L. Statistical phylogeography. Annu. Rev. Ecol. Syst. 2009, 40:593-612.
-
(2009)
Annu. Rev. Ecol. Syst.
, vol.40
, pp. 593-612
-
-
Knowles, L.L.1
-
45
-
-
33645108873
-
LAMARC 2.0: maximum likelihood and Bayesian estimation of population parameters
-
Kuhner M.K. LAMARC 2.0: maximum likelihood and Bayesian estimation of population parameters. Bioinformatics 2006, 22:768-770.
-
(2006)
Bioinformatics
, vol.22
, pp. 768-770
-
-
Kuhner, M.K.1
-
46
-
-
33745041278
-
Relative performance of Bayesian clustering software for inferring population substructure and individual assignment at low levels of population differentiation
-
Latch E.K., Dharmarajan G., Glaubitz J.C., Rhodes O.E. Relative performance of Bayesian clustering software for inferring population substructure and individual assignment at low levels of population differentiation. Conserv. Genet. 2006, 7:295-302.
-
(2006)
Conserv. Genet.
, vol.7
, pp. 295-302
-
-
Latch, E.K.1
Dharmarajan, G.2
Glaubitz, J.C.3
Rhodes, O.E.4
-
47
-
-
65649117685
-
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
-
Librado P., Rozas J. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 2009, 25:1451-1452.
-
(2009)
Bioinformatics
, vol.25
, pp. 1451-1452
-
-
Librado, P.1
Rozas, J.2
-
48
-
-
0034510493
-
A molecular phylogeny of warbling-finches (Poospiza): paraphyly in a Neotropical emberizid genus
-
Lougheed S.C., Freeland J.R., Handford P., Boag P.T. A molecular phylogeny of warbling-finches (Poospiza): paraphyly in a Neotropical emberizid genus. Mol. Phylogenet. Evol. 2000, 17:367-378.
-
(2000)
Mol. Phylogenet. Evol.
, vol.17
, pp. 367-378
-
-
Lougheed, S.C.1
Freeland, J.R.2
Handford, P.3
Boag, P.T.4
-
49
-
-
78049406670
-
A comprehensive multilocus phylogeny for the wood-warblers and a revised classification of the Parulidae (Aves)
-
Lovette I.J., Perez-Eman J.L., Sullivan J.P., Banks R.C., Fiorentino I., Cordoba-Cordoba S., Echeverry-Galvis M., Barker F.K., Burns K.J., Klicka J., Lanyon S.M., Bermingham E. A comprehensive multilocus phylogeny for the wood-warblers and a revised classification of the Parulidae (Aves). Mol. Phylogenet. Evol. 2010, 57:753-770.
-
(2010)
Mol. Phylogenet. Evol.
, vol.57
, pp. 753-770
-
-
Lovette, I.J.1
Perez-Eman, J.L.2
Sullivan, J.P.3
Banks, R.C.4
Fiorentino, I.5
Cordoba-Cordoba, S.6
Echeverry-Galvis, M.7
Barker, F.K.8
Burns, K.J.9
Klicka, J.10
Lanyon, S.M.11
Bermingham, E.12
-
50
-
-
84857960825
-
Climatic oscillations shape the phylogeographical structure of Atlantic forest fire-eye antbirds (Aves: Thamnophilidae)
-
Maldonado-Coelho M. Climatic oscillations shape the phylogeographical structure of Atlantic forest fire-eye antbirds (Aves: Thamnophilidae). Biol. J. Linn. Soc. 2012, 105:900-924.
-
(2012)
Biol. J. Linn. Soc.
, vol.105
, pp. 900-924
-
-
Maldonado-Coelho, M.1
-
51
-
-
0036824173
-
A multifaceted approach to the characterization of an intergeneric hybrid manakin (Pipridae) from Brazil
-
Marini M.A., Hackett S.J. A multifaceted approach to the characterization of an intergeneric hybrid manakin (Pipridae) from Brazil. Auk 2002, 119:1114-1120.
-
(2002)
Auk
, vol.119
, pp. 1114-1120
-
-
Marini, M.A.1
Hackett, S.J.2
-
52
-
-
80054688387
-
The Brazilian Atlantic forest historical biogeography and the Carnaval-Moritz model of Pleistocene refugia: what do the phylogeographical studies tell us?
-
Martins F.M. The Brazilian Atlantic forest historical biogeography and the Carnaval-Moritz model of Pleistocene refugia: what do the phylogeographical studies tell us?. Biol. J. Linn. Soc. 2011, 104:499-509.
-
(2011)
Biol. J. Linn. Soc.
, vol.104
, pp. 499-509
-
-
Martins, F.M.1
-
53
-
-
74349095595
-
Phylogeography of the common vampire bat (Desmodus rotundus): marked population structure, Neotropical Pleistocene vicariance and incongruence between nuclear and mtDNA markers
-
Martins F.M., Templeton A.R., Pavan A.C.O., Kohlbach B.C., Morgante J.S. Phylogeography of the common vampire bat (Desmodus rotundus): marked population structure, Neotropical Pleistocene vicariance and incongruence between nuclear and mtDNA markers. BMC Evol. Biol. 2009, 9:294.
-
(2009)
BMC Evol. Biol.
, vol.9
, pp. 294
-
-
Martins, F.M.1
Templeton, A.R.2
Pavan, A.C.O.3
Kohlbach, B.C.4
Morgante, J.S.5
-
54
-
-
77954260585
-
Neotropical birds show a humped distribution of within-population genetic diversity along a latitudinal transect
-
Miller M.J., Bermingham E., Klicka J., Escalante P., Winker K. Neotropical birds show a humped distribution of within-population genetic diversity along a latitudinal transect. Ecol. Lett. 2010, 13:576-586.
-
(2010)
Ecol. Lett.
, vol.13
, pp. 576-586
-
-
Miller, M.J.1
Bermingham, E.2
Klicka, J.3
Escalante, P.4
Winker, K.5
-
55
-
-
0034503191
-
Diversification of rainforest faunas: an integrated molecular approach
-
Moritz C., Patton J.L., Schneider C.J., Smith T.B. Diversification of rainforest faunas: an integrated molecular approach. Annu. Rev. Ecol. Syst. 2000, 31:533-563.
-
(2000)
Annu. Rev. Ecol. Syst.
, vol.31
, pp. 533-563
-
-
Moritz, C.1
Patton, J.L.2
Schneider, C.J.3
Smith, T.B.4
-
56
-
-
0034708178
-
Biodiversity hotspots for conservation priorities
-
Myers N., Mittermeier R.A., Mittermeier C.G., da Fonseca G.A.B., Kent J. Biodiversity hotspots for conservation priorities. Nature 2000, 403:853-858.
-
(2000)
Nature
, vol.403
, pp. 853-858
-
-
Myers, N.1
Mittermeier, R.A.2
Mittermeier, C.G.3
da Fonseca, G.A.B.4
Kent, J.5
-
57
-
-
61649119281
-
Statistical inferences in phylogeography
-
Nielsen R., Beaumont M.A. Statistical inferences in phylogeography. Mol. Ecol. 2009, 18:1034-1047.
-
(2009)
Mol. Ecol.
, vol.18
, pp. 1034-1047
-
-
Nielsen, R.1
Beaumont, M.A.2
-
58
-
-
79751474639
-
Patterns of diversification in two species of short-tailed bats (Carollia Gray, 1838): the effects of historical fragmentation of Brazilian rainforests
-
Pavan A.C., Martins F.M., Santos F.R., Ditchfield A., Redondo R.A.F. Patterns of diversification in two species of short-tailed bats (Carollia Gray, 1838): the effects of historical fragmentation of Brazilian rainforests. Biol. J. Linn. Soc. 2011, 102:527-539.
-
(2011)
Biol. J. Linn. Soc.
, vol.102
, pp. 527-539
-
-
Pavan, A.C.1
Martins, F.M.2
Santos, F.R.3
Ditchfield, A.4
Redondo, R.A.F.5
-
59
-
-
78149423210
-
Distinguishing between population bottleneck and population subdivision by a Bayesian model choice procedure
-
Peter B.M., Wegmann D., Excoffier L. Distinguishing between population bottleneck and population subdivision by a Bayesian model choice procedure. Mol. Ecol. 2010, 19:4648-4660.
-
(2010)
Mol. Ecol.
, vol.19
, pp. 4648-4660
-
-
Peter, B.M.1
Wegmann, D.2
Excoffier, L.3
-
60
-
-
0033519676
-
Climate and atmospheric history of the past 420,000 years from the Vostok ice core, Antarctica
-
Petit J.R., Jouzel J., Raynaud D., Barkov N.I., Barnola J.M., Basile I., Bender M., Chappellaz J., Davis M., Delaygue G., Delmotte M., Kotlyakov V.M., Legrand M., Lipenkov V.Y., Lorius C., Pepin L., Ritz C., Saltzman E., Stievenard M. Climate and atmospheric history of the past 420,000 years from the Vostok ice core, Antarctica. Nature 1999, 399:429-436.
-
(1999)
Nature
, vol.399
, pp. 429-436
-
-
Petit, J.R.1
Jouzel, J.2
Raynaud, D.3
Barkov, N.I.4
Barnola, J.M.5
Basile, I.6
Bender, M.7
Chappellaz, J.8
Davis, M.9
Delaygue, G.10
Delmotte, M.11
Kotlyakov, V.M.12
Legrand, M.13
Lipenkov, V.Y.14
Lorius, C.15
Pepin, L.16
Ritz, C.17
Saltzman, E.18
Stievenard, M.19
-
61
-
-
0031773680
-
MODELTEST: testing the model of DNA substitution
-
Posada D., Krandall K.A. MODELTEST: testing the model of DNA substitution. Bioinformatics 1998, 14:817-818.
-
(1998)
Bioinformatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Krandall, K.A.2
-
62
-
-
0034118493
-
Inference of population structure using multilocus genotype data
-
Pritchard J.K., Stephens M., Donnelly P. Inference of population structure using multilocus genotype data. Genetics 2000, 155:945-959.
-
(2000)
Genetics
, vol.155
, pp. 945-959
-
-
Pritchard, J.K.1
Stephens, M.2
Donnelly, P.3
-
63
-
-
0036897674
-
Statistical properties of new neutrality test against population growth
-
Ramos-Onsins S., Rozas J. Statistical properties of new neutrality test against population growth. Mol. Biol. Evol. 2002, 19:2092-2100.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 2092-2100
-
-
Ramos-Onsins, S.1
Rozas, J.2
-
64
-
-
84855645516
-
A palaeobiogeographic model for biotic diversification within Amazonia over the past three million years
-
Ribas C.C., Aleixo A., Nogueira A.C.R., Miyaki C.Y., Cracraft J. A palaeobiogeographic model for biotic diversification within Amazonia over the past three million years. Proc. R. Soc. B 2012, 279:681-689.
-
(2012)
Proc. R. Soc. B
, vol.279
, pp. 681-689
-
-
Ribas, C.C.1
Aleixo, A.2
Nogueira, A.C.R.3
Miyaki, C.Y.4
Cracraft, J.5
-
65
-
-
63349103172
-
The Brazilian Atlantic forest: how much is left, and how is the remaining forest distributed? Implications for conservation
-
Ribeiro C.A., Metzger J.P., Martensen A.C., Ponzoni F.J., Hirota M.M. The Brazilian Atlantic forest: how much is left, and how is the remaining forest distributed? Implications for conservation. Biol. Conserv. 2009, 142:1141-1153.
-
(2009)
Biol. Conserv.
, vol.142
, pp. 1141-1153
-
-
Ribeiro, C.A.1
Metzger, J.P.2
Martensen, A.C.3
Ponzoni, F.J.4
Hirota, M.M.5
-
66
-
-
78650304024
-
Phylogeography of the endangered rosewood Dalbergia nigra (Fabaceae): insights into the evolutionary history and conservation of the Brazilian Atlantic forest
-
Ribeiro R.A., Lemos-Filho J.P., Ramos A.C.S., Lovato M.B. Phylogeography of the endangered rosewood Dalbergia nigra (Fabaceae): insights into the evolutionary history and conservation of the Brazilian Atlantic forest. Heredity 2010, 106:46-57.
-
(2010)
Heredity
, vol.106
, pp. 46-57
-
-
Ribeiro, R.A.1
Lemos-Filho, J.P.2
Ramos, A.C.S.3
Lovato, M.B.4
-
67
-
-
35348958892
-
Distribution modelling and statistical phylogeography: an integrative framework for generating and testing alternative biogeographical hypotheses
-
Richards C.L., Carstens B.C., Knowles L. Distribution modelling and statistical phylogeography: an integrative framework for generating and testing alternative biogeographical hypotheses. J. Biogeogr. 2007, 34:1833-1845.
-
(2007)
J. Biogeogr.
, vol.34
, pp. 1833-1845
-
-
Richards, C.L.1
Carstens, B.C.2
Knowles, L.3
-
69
-
-
33845971686
-
Map and Database of Quaternary faults and Lineaments in Brazil
-
U.S. Geological Survey. Open-File Report 02-230, Version 1.0.
-
Saadi, A., Machette, M.N., Haller, K.M., Dart, R.L., Bradley, L., Souza, A.M.P.D., 2002. Map and Database of Quaternary faults and Lineaments in Brazil. U.S. Geological Survey. Open-File Report 02-230, Version 1.0. http://www.beast.bio.ed.ac.uk/Tracer.
-
(2002)
-
-
Saadi, A.1
Machette, M.N.2
Haller, K.M.3
Dart, R.L.4
Bradley, L.5
Souza, A.M.P.D.6
-
71
-
-
66149091648
-
Variabilidade e mudanças climáticas no Brasil e seus impactos
-
Holos Editora, Ribeirão Preto, G.R.G. Souza, K. Suguio, M.A.S. Oliveira, P.L. Oliveira (Eds.)
-
Sant'Anna Neto J.L., Nery J.T. Variabilidade e mudanças climáticas no Brasil e seus impactos. Quaternário do Brasil 2005, 28-50. Holos Editora, Ribeirão Preto. G.R.G. Souza, K. Suguio, M.A.S. Oliveira, P.L. Oliveira (Eds.).
-
(2005)
Quaternário do Brasil
, pp. 28-50
-
-
Sant'Anna Neto, J.L.1
Nery, J.T.2
-
73
-
-
0030879015
-
A role for ecotones in generating rainforest biodiversity
-
Smith T.B., Wayne R.K., Girman D.J., Bruford M.W. A role for ecotones in generating rainforest biodiversity. Science 1997, 276:1855-1857.
-
(1997)
Science
, vol.276
, pp. 1855-1857
-
-
Smith, T.B.1
Wayne, R.K.2
Girman, D.J.3
Bruford, M.W.4
-
74
-
-
0035707968
-
Refugial isolation versus ecological gradients
-
Smith T.B., Schneider C.J., Holder K. Refugial isolation versus ecological gradients. Genetica 2001, 112:383-398.
-
(2001)
Genetica
, vol.112
, pp. 383-398
-
-
Smith, T.B.1
Schneider, C.J.2
Holder, K.3
-
76
-
-
50549084770
-
Paleodistributions and comparative molecular phylogeography of leafcutter ants (Atta spp.) provide new insight into the origins of amazonian diversity
-
Solomon S.E., Bacci M., Martins J., Vinha G.G., Mueller U.G. Paleodistributions and comparative molecular phylogeography of leafcutter ants (Atta spp.) provide new insight into the origins of amazonian diversity. PLoS One 2008, 3:e2738.
-
(2008)
PLoS One
, vol.3
-
-
Solomon, S.E.1
Bacci, M.2
Martins, J.3
Vinha, G.G.4
Mueller, U.G.5
-
77
-
-
39049190992
-
Testing hypotheses of Pleistocene population history using coalescent simulations: phylogeography of the pygmy nuthatch (Sitta pygmaea)
-
Spellman G.M., Klicka J. Testing hypotheses of Pleistocene population history using coalescent simulations: phylogeography of the pygmy nuthatch (Sitta pygmaea). Proc. R. Soc. B 2006, 273:3057-3063.
-
(2006)
Proc. R. Soc. B
, vol.273
, pp. 3057-3063
-
-
Spellman, G.M.1
Klicka, J.2
-
78
-
-
0035071957
-
A new statistical method for haplotype reconstruction from population data
-
Stephens M., Smith N., Donnelly P. A new statistical method for haplotype reconstruction from population data. Am. J. Hum. Genet. 2001, 68:978-989.
-
(2001)
Am. J. Hum. Genet.
, vol.68
, pp. 978-989
-
-
Stephens, M.1
Smith, N.2
Donnelly, P.3
-
79
-
-
0003912546
-
-
University of Chicago Press, Chicago
-
Stotz D.F., Fitzpatrick J.W., Parker T.A., Moskovits D.K. Neotropical Birds: Ecology and Conservation 1996, University of Chicago Press, Chicago.
-
(1996)
Neotropical Birds: Ecology and Conservation
-
-
Stotz, D.F.1
Fitzpatrick, J.W.2
Parker, T.A.3
Moskovits, D.K.4
-
80
-
-
0024762773
-
The effect of change in population size on DNA polymorphism
-
Tajima F. The effect of change in population size on DNA polymorphism. Genetics 1989, 123:597-601.
-
(1989)
Genetics
, vol.123
, pp. 597-601
-
-
Tajima, F.1
-
81
-
-
34547781750
-
MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
-
Tamura K., Dudley J., Nei M., Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
82
-
-
77953136586
-
Phylogeography of endemic toads and post-Pliocene persistence of the Brazilian Atlantic forest
-
Thomé M.T.C., Zamudio K.R., Giovanelli J.G.R., Haddad C.F.B., Baldissera F.A., Alexandrino J.M.B. Phylogeography of endemic toads and post-Pliocene persistence of the Brazilian Atlantic forest. Mol. Phylogenet. Evol. 2010, 55:1018-1031.
-
(2010)
Mol. Phylogenet. Evol.
, vol.55
, pp. 1018-1031
-
-
Thomé, M.T.C.1
Zamudio, K.R.2
Giovanelli, J.G.R.3
Haddad, C.F.B.4
Baldissera, F.A.5
Alexandrino, J.M.B.6
-
83
-
-
77954562166
-
Multilocus analysis of honeyeaters (Aves: Meliphagidae) highlights spatio-temporal heterogeneity in the influence of biogeographic barriers in the Australian monsoonal zone
-
Toon A., Hughes J.M., Joseph L. Multilocus analysis of honeyeaters (Aves: Meliphagidae) highlights spatio-temporal heterogeneity in the influence of biogeographic barriers in the Australian monsoonal zone. Mol. Ecol. 2010, 19:2980-2994.
-
(2010)
Mol. Ecol.
, vol.19
, pp. 2980-2994
-
-
Toon, A.1
Hughes, J.M.2
Joseph, L.3
-
84
-
-
0002664943
-
South American anoles: the geographic differentiation and evolution of the Anolis chrysolepis species group (Sauria: iguanidae)
-
Vanzolini P.E., Williams E.E. South American anoles: the geographic differentiation and evolution of the Anolis chrysolepis species group (Sauria: iguanidae). Arquiv. Zool. (S. Paulo) 1970, 19:1-298.
-
(1970)
Arquiv. Zool. (S. Paulo)
, vol.19
, pp. 1-298
-
-
Vanzolini, P.E.1
Williams, E.E.2
-
85
-
-
29444451610
-
Interrogating multiple aspects of variation in a full resequencing data set to infer human population size changes
-
Voight B.F., Adams A.M., Frisse L.A., Qian Y., Hudson R.R., Di Rienzo A. Interrogating multiple aspects of variation in a full resequencing data set to infer human population size changes. Proc. Natl. Acad. Sci. USA 2005, 102:18508-18513.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 18508-18513
-
-
Voight, B.F.1
Adams, A.M.2
Frisse, L.A.3
Qian, Y.4
Hudson, R.R.5
Di Rienzo, A.6
-
86
-
-
0000211964
-
On the monkeys of the Amazon
-
Wallace A.R. On the monkeys of the Amazon. Proc. Zool. Soc. London 1852, 20:107-110.
-
(1852)
Proc. Zool. Soc. London
, vol.20
, pp. 107-110
-
-
Wallace, A.R.1
-
87
-
-
43049101093
-
Calibrating the avian molecular clock
-
Weir J.T., Schluter D. Calibrating the avian molecular clock. Mol. Ecol. 2008, 17:2321-2328.
-
(2008)
Mol. Ecol.
, vol.17
, pp. 2321-2328
-
-
Weir, J.T.1
Schluter, D.2
-
88
-
-
28444493739
-
Combining probability from independent tests: the weighted Z-method is superior to Fisher's approach
-
Whitlock M.C. Combining probability from independent tests: the weighted Z-method is superior to Fisher's approach. J. Evol. Biol. 2005, 18:1368-1373.
-
(2005)
J. Evol. Biol.
, vol.18
, pp. 1368-1373
-
-
Whitlock, M.C.1
|