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Volumn 925, Issue , 2012, Pages 211-218

Generation of cDNA libraries from RNP-derived regulatory noncoding RNAs

Author keywords

CDNA library; High throughput sequencing (or next generation sequencing NGS); Noncoding RNAs; Ribonucleoprotein particle

Indexed keywords


EID: 84867513669     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-62703-011-3_14     Document Type: Article
Times cited : (2)

References (37)
  • 1
    • 34250305146 scopus 로고    scopus 로고
    • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
    • Birney E et al (2007) Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 447:799-816
    • (2007) Nature , vol.447 , pp. 799-816
    • Birney, E.1
  • 2
    • 17644382616 scopus 로고    scopus 로고
    • Waste not, want not-transcript excess in multicellular eukaryotes
    • Brosius J (2005) Waste not, want not-transcript excess in multicellular eukaryotes. Trends Genet 21:287-288
    • (2005) Trends Genet , vol.21 , pp. 287-288
    • Brosius, J.1
  • 3
    • 24644519490 scopus 로고    scopus 로고
    • The transcriptional landscape of the mammalian genome
    • Carninci P et al (2005) The transcriptional landscape of the mammalian genome. Science 309:1559-1563
    • (2005) Science , vol.309 , pp. 1559-1563
    • Carninci, P.1
  • 4
    • 21044431735 scopus 로고    scopus 로고
    • Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution
    • Cheng J et al (2005) Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution. Science 308:1149-1154
    • (2005) Science , vol.308 , pp. 1149-1154
    • Cheng, J.1
  • 5
    • 12144287461 scopus 로고    scopus 로고
    • Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22
    • Kampa D et al (2004) Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22. Genome Res 14:331-342
    • (2004) Genome Res , vol.14 , pp. 331-342
    • Kampa, D.1
  • 6
    • 15944402920 scopus 로고    scopus 로고
    • Small regulatory RNAs in mammals
    • Mattick JS, Makunin IV (2005) Small regulatory RNAs in mammals. Hum Mol Genet 14(1):R121-R132
    • (2005) Hum Mol Genet , vol.14 , Issue.1
    • Mattick, J.S.1    Makunin, I.V.2
  • 8
    • 33745286231 scopus 로고    scopus 로고
    • TUF love for "junk" DNA
    • Willingham AT, Gingeras TR (2006) TUF love for "junk" DNA. Cell 125:1215-1220
    • (2006) Cell , vol.125 , pp. 1215-1220
    • Willingham, A.T.1    Gingeras, T.R.2
  • 9
    • 0037146606 scopus 로고    scopus 로고
    • Breakthrough of the year. Small RNAs make big splash
    • Couzin J (2002) Breakthrough of the year. Small RNAs make big splash. Science 298:2296-2297
    • (2002) Science , vol.298 , pp. 2296-2297
    • Couzin, J.1
  • 10
    • 0037180835 scopus 로고    scopus 로고
    • Small RNAs: The genome's guiding hand?
    • Dennis C (2002) Small RNAs: the genome's guiding hand? Nature 420:732
    • (2002) Nature , vol.420 , pp. 732
    • Dennis, C.1
  • 11
    • 0037062973 scopus 로고    scopus 로고
    • The brave new world of RNA
    • Dennis C (2002) The brave new world of RNA. Nature 418:122-124
    • (2002) Nature , vol.418 , pp. 122-124
    • Dennis, C.1
  • 12
    • 0036899930 scopus 로고    scopus 로고
    • RNomics: Identification and function of small, non-messenger RNAs
    • Huttenhofer A, Brosius J, Bachellerie JP (2002) RNomics: identification and function of small, non-messenger RNAs. Curr Opin Chem Biol 6:835-843
    • (2002) Curr Opin Chem Biol , vol.6 , pp. 835-843
    • Huttenhofer, A.1    Brosius, J.2    Bachellerie, J.P.3
  • 13
    • 79952949363 scopus 로고    scopus 로고
    • Small non-coding RNAs in disease development and host-pathogen interactions
    • Rederstorff M, Huttenhofer A (2010) Small non-coding RNAs in disease development and host-pathogen interactions. Curr Opin Mol Ther 12:684-694
    • (2010) Curr Opin Mol Ther , vol.12 , pp. 684-694
    • Rederstorff, M.1    Huttenhofer, A.2
  • 14
    • 0035966319 scopus 로고    scopus 로고
    • MicroRNAs: Tiny regulators with great potential
    • Ambros V (2001) microRNAs: tiny regulators with great potential. Cell 107:823-826
    • (2001) Cell , vol.107 , pp. 823-826
    • Ambros, V.1
  • 16
    • 0037112006 scopus 로고    scopus 로고
    • Stealth regulation: Biological circuits with small RNA switches
    • Gottesman S (2002) Stealth regulation: biological circuits with small RNA switches. Genes Dev 16:2829-2842
    • (2002) Genes Dev , vol.16 , pp. 2829-2842
    • Gottesman, S.1
  • 17
    • 0037133942 scopus 로고    scopus 로고
    • Small nucleolar RNAs: An abundant group of noncoding RNAs with diverse cellular functions
    • Kiss T (2002) Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions. Cell 109:145-148
    • (2002) Cell , vol.109 , pp. 145-148
    • Kiss, T.1
  • 18
    • 0035955361 scopus 로고    scopus 로고
    • An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
    • Lau NC et al (2001) An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans. Science 294:858-862
    • (2001) Science , vol.294 , pp. 858-862
    • Lau, N.C.1
  • 19
    • 0035955366 scopus 로고    scopus 로고
    • An extensive class of small RNAs in Caenorhabditis elegans
    • Lee RC, Ambros V (2001) An extensive class of small RNAs in Caenorhabditis elegans. Science 294:862-864
    • (2001) Science , vol.294 , pp. 862-864
    • Lee, R.C.1    Ambros, V.2
  • 20
    • 0037162702 scopus 로고    scopus 로고
    • Prediction of plant microRNA targets
    • Rhoades MW et al (2002) Prediction of plant microRNA targets. Cell 110:513-520
    • (2002) Cell , vol.110 , pp. 513-520
    • Rhoades, M.W.1
  • 21
    • 0037123632 scopus 로고    scopus 로고
    • An expanding universe of noncoding RNAs
    • Storz G (2002) An expanding universe of noncoding RNAs. Science 296:1260-1263
    • (2002) Science , vol.296 , pp. 1260-1263
    • Storz, G.1
  • 22
    • 0036245743 scopus 로고    scopus 로고
    • Expanding small RNA interference
    • Tuschl T (2002) Expanding small RNA interference. Nat Biotechnol 20:446-448
    • (2002) Nat Biotechnol , vol.20 , pp. 446-448
    • Tuschl, T.1
  • 23
    • 0037448593 scopus 로고    scopus 로고
    • Functional genomics: RNA sets the standard
    • Tuschl T (2003) Functional genomics: RNA sets the standard. Nature 421:220-221
    • (2003) Nature , vol.421 , pp. 220-221
    • Tuschl, T.1
  • 24
    • 0037072661 scopus 로고    scopus 로고
    • Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi
    • Volpe TA et al (2002) Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi. Science 297: 1833-1837
    • (2002) Science , vol.297 , pp. 1833-1837
    • Volpe, T.A.1
  • 25
    • 38949188739 scopus 로고    scopus 로고
    • Non-coding RNAs regulating the transcriptional machinery
    • Barrandon C, Spiluttini B, Bensaude O (2008) Non-coding RNAs regulating the transcriptional machinery. Biol Cell 100:83-95
    • (2008) Biol Cell , vol.100 , pp. 83-95
    • Barrandon, C.1    Spiluttini, B.2    Bensaude, O.3
  • 26
    • 4344705410 scopus 로고    scopus 로고
    • Small interfering RNAinduced transcriptional gene silencing in human cells
    • Morris KV et al (2004) Small interfering RNAinduced transcriptional gene silencing in human cells. Science 305:1289-1292
    • (2004) Science , vol.305 , pp. 1289-1292
    • Morris, K.V.1
  • 27
    • 0942279635 scopus 로고    scopus 로고
    • RNAi-mediated targeting of heterochromatin by the RITS complex
    • Verdel A et al (2004) RNAi-mediated targeting of heterochromatin by the RITS complex. Science 303:672-676
    • (2004) Science , vol.303 , pp. 672-676
    • Verdel, A.1
  • 28
    • 75749124997 scopus 로고    scopus 로고
    • 2-D structure of the A region of Xist RNA and its implication for PRC2 association
    • Maenner S et al (2010) 2-D structure of the A region of Xist RNA and its implication for PRC2 association. PLoS Biol 8:e1000276
    • (2010) PLoS Biol , vol.8
    • Maenner, S.1
  • 29
    • 23044486393 scopus 로고    scopus 로고
    • The Air noncoding RNA: An imprinted cis-silencing transcript
    • Braidotti G et al (2004) The Air noncoding RNA: an imprinted cis-silencing transcript. Cold Spring Harb Symp Quant Biol 69:55-66
    • (2004) Cold Spring Harb Symp Quant Biol , vol.69 , pp. 55-66
    • Braidotti, G.1
  • 30
    • 78751662908 scopus 로고    scopus 로고
    • The Polycomb complex PRC2 and its mark in life
    • Margueron R, Reinberg D (2011) The Polycomb complex PRC2 and its mark in life. Nature 469:343-349
    • (2011) Nature , vol.469 , pp. 343-349
    • Margueron, R.1    Reinberg, D.2
  • 31
    • 0035355205 scopus 로고    scopus 로고
    • RNomics: An experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse
    • Huttenhofer A et al (2001) RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. EMBO J 20:2943-2953
    • (2001) EMBO J , vol.20 , pp. 2943-2953
    • Huttenhofer, A.1
  • 32
    • 32644439243 scopus 로고    scopus 로고
    • Experimental approaches to identify non-coding RNAs
    • Huttenhofer A, Vogel J (2006) Experimental approaches to identify non-coding RNAs. Nucleic Acids Res 34:635-646
    • (2006) Nucleic Acids Res , vol.34 , pp. 635-646
    • Huttenhofer, A.1    Vogel, J.2
  • 33
    • 43349083066 scopus 로고    scopus 로고
    • Small ncRNA transcriptome analysis from Aspergillus fumigatus suggests a novel mechanism for regulation of protein synthesis
    • Jochl C et al (2008) Small ncRNA transcriptome analysis from Aspergillus fumigatus suggests a novel mechanism for regulation of protein synthesis. Nucleic Acids Res 36:2677-2689
    • (2008) Nucleic Acids Res , vol.36 , pp. 2677-2689
    • Jochl, C.1
  • 34
    • 77954117695 scopus 로고    scopus 로고
    • RNPomics: Defining the ncRNA transcriptome by cDNA library generation from ribonucleo-protein particles
    • Rederstorff M et al (2010) RNPomics: defining the ncRNA transcriptome by cDNA library generation from ribonucleo-protein particles. Nucleic Acids Res 38:e113
    • (2010) Nucleic Acids Res , vol.38
    • Rederstorff, M.1
  • 35
    • 79551677003 scopus 로고    scopus 로고
    • CDNA library generation from ribonucleoprotein particles
    • Rederstorff M, Huttenhofer A (2011) cDNA library generation from ribonucleoprotein particles. Nat Protoc 6:166-174
    • (2011) Nat Protoc , vol.6 , pp. 166-174
    • Rederstorff, M.1    Huttenhofer, A.2
  • 36
    • 72849144434 scopus 로고    scopus 로고
    • Sequencing technologies-The next generation
    • Metzker ML (2010) Sequencing technologies-the next generation. Nat Rev Genet 11:31-46
    • (2010) Nat Rev Genet , vol.11 , pp. 31-46
    • Metzker, M.L.1
  • 37
    • 0021100690 scopus 로고
    • Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei
    • Dignam JD, Lebovitz RM, Roeder RG (1983) Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei. Nucleic Acids Res 11: 1475-1489
    • (1983) Nucleic Acids Res , vol.11 , pp. 1475-1489
    • Dignam, J.D.1    Lebovitz, R.M.2    Roeder, R.G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.