Comparison of intestinal bacterial communities in grass carp, Ctenopharyngodon idellus, from two different habitats

Chinese Journal of Oceanology and Limnology

Volumn 30, Issue 5, 2012, Pages 757-765

  Ni, Jiajia ^a,b   Yu, Yuhe ^a   Zhang, Tanglin ^a   Gao, Lei ^a,b  

^a INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

Author keywords

denaturing gradient gel electrophoresis; grass carp; habitat; intestinal bacterial community

Indexed keywords

EID: 84867432596     PISSN: 02544059     EISSN: 19935005     Source Type: Journal    
DOI: 10.1007/s00343-012-1287-4     Document Type: Article

References (45)

1. Balcázar J L, de Blas I, Ruiz-Zarzuela I, Cunningham D, Vendrell D, Múzquiz J L. 2006. The role of probiotics in aquaculture. Vet. Microbiol., 114(3-4): 173-186.
2. Bano N, deRae Smith A, Bennett W, Vasque L, Hollibaugh J T. 2007. Dominance of Mycoplasma in the guts of the longjawed mudsucker, Gillichthys mirabilis, from five California salt marshes. Environ. Microbiol., 9(10): 2 636-2 641.
3. Caipang C M A, Brinchmann M F, Kiron V. 2010. Antagonistic activity of bacterial isolates from intestinal microbiota of Atlantic cod, Gadus morhua, and an investigation of their immunomodulatory capabilities. Aquac. Res., 41(2): 249-256.
4. Dethlefsen L, McFall-Ngai M, Relman D A. 2007. An ecological and evolutionary perspective on human-microbe mutualism and disease. Nature, 449(7 164): 811-818.
5. Eckburg P B, Bik E M, Bernstein C N, Purdom E, Dethlefsen L, Sargent M, Gill S R, Nelson K E, Relman D A. 2005. Diversity of the human intestinal microbial flora. Science, 308(5 728): 1 635-1 638.
6. Finegold S M, Vaisanen M L, Molitoris D R, Tomzynski T J, Song Y, Liu C, Collons M D, Lawson P A. 2003. Cetobacterium somerae sp. nov. from human feces and emended description of the genus Cetobacterium. Syst. Appl. Microbiol., 26(2): 177-181.
7. Fujimura K E, Slusher N A, Cabana M D, Lynch S V. 2010. Role of the gut microbiota in defining human health. Expert Rev. Anti-Infect. Ther., 8(4): 435-454.
8. Garrett W S, Gordon J I, Glimcher L H. 2010. Homeostasis and inflammation in the intestine. Cell, 140(6): 859-870.
9. Goldschmidt-Clermont E, Wahli T, Frey J, Burr S E. 2008. Identification of bacteria from the normal flora of perch, Perca fluviatilis L., and evaluation of their inhibitory potential towards Aeromonas species. J. Fish Dis., 31(5): 353-359.
10. Han S, Liu Y, Zhou Z, He S, Cao Y, Shi P, Yao B, Ringø E. 2010. Analysis of bacterial diversity in the intestine of grass carp (Ctenopharyngodon idellus) based on 16S rDNA gene sequences. Aquac. Res., 42(1): 47-56.
11. Hooper L V, Gordon J I. 2001. Commensal host-bacterial relationships in the gut. Science, 292(5 519): 1 115-1 118.
12. Hrncir T, Stepankova R, Kozakova H, Hudcovic T, Tlaskalova-Hogenova H. 2008. Gut microbiota and lipopolysaccharide content of the diet influence development of regulatory T cells: studies in germ-free mice. BMC Immunol., 9: 65.
13. Huang H, Shi P, Wang Y, Luo H, Shao N, Wang G, Yang P, Yao B. 2009. Gene diversity of beta-propeller phytase in the intestinal contents of grass carp insight into the major phosphorus release from phytate in nature. Appl. Environ. Microbiol., 75(6): 1 508-1 516.
14. Irianto A, Austin B. 2002. Use of probiotics to control furunculosis in rainbow trout, Oncorhynchus mykiss (Walbaum). J. Fish Dis., 25(1): 333-342.
15. Kesarcodi-Watson A, Kaspar H, Lategan M J, Gibson L. 2008. Probiotics in aquaculture: the need, principles and mechanisms of action and screening processes. Aquaculture, 274(1): 1-14.
16. Kocherginskaya S A, Aminov R I, White B A. 2001. Analysis of the rumen bacterial diversity under two different diet conditions using denaturing gradient gel electrophoresis, random sequencing, and statistical ecology approaches. Anaerobe, 7(3): 119-134.
17. Ley R E, Peterson D A, Gordon J I. 2006. Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell, 124(4): 837-848.
18. Li M, Yang H, Gu J D. 2009. Phylogenetic diversity and axial distribution of microbes in the intestinal tract of the polychaete Neanthes glandicincta. Microb. Ecol., 58: 892-902.
19. Li X M, Yu Y H, Xie S Q, Yan Q Y, Chen Y H. 2011. Effect of chitosan on intestinal bacteria of allogynogenetic crucian carp, Carassius auratus gibelio, as depicted by polymerase chain reaction-denaturing gradient gel electrophoresis. J. World Aquacult. Soc., 42(4): 539-548.
20. Mazmanian S K, Round J L, Kasper D L. 2008. A microbial symbiosis factor prevents intestinal inflammatory disease. Nature, 453(7 195): 620-625.
21. McIntosh D, Ji B, Forward B S, Puvanendran V, Boyce D, Ritchie R. 2008. Culture-independent characterization of the bacterial populations associated with cod (Gadus morhua L.) and live feed at an experimental hatchery facility using denaturing gradient gel electrophoresis. Aquaculture, 275(1-4): 42-50.
22. Muyzer G, De Waal E C, Uitterlinden A G. 1993. Profiling of complex bacterial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reactionamplified genes coding for 16S rRNA. Appl. Environ. Microbiol., 59(3): 695-700.
23. Muyzer G, Smalla K. 1998. Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology. Antonie van Leeuwenhoek, 73(1): 127-141.
24. Muyzer G. 1999. DGGE/TGGE a method for identifying genes from natural ecosystems. Curr. Opin. Microbiol., 2(3): 317-322.
25. Naylor R L, Goldburg R J, Primavera J H, Kautsky N, Beveridge M C M, Clay J, Folke C, Lubchenco J, Mooney H, Troell M. 2000. Effect of aquaculture on world fish supplies. Nature, 405(6 790): 1 017-1 024.
26. Ni D S, Wang J G. 1999. Biology and Diseases of Grass Carp. Science Press, Beijing, China. (in Chinese).
27. Nikoskelainen S, Ouwehanda A C, Bylund G, Salminen S, Lilius E-M. 2003. Immune enhancement in rainbow trout (Oncorhynchus mykiss) by potential probiotic bacteria (Lactobacillus rhamnosus). Fish Shellfish Immunol., 15(5): 443-452.
28. Rasmussen H E, MartÍnez I, Lee J Y, Walter J. 2009. Alteration of the gastrointestinal microbiota of mice by edible bluegreen algae. J. Appl. Microbiol., 107(4): 1 108-1 118.
29. Rawls J F. 2007. Enteric infection and inflammation alter gut microbial ecology. Cell Host Microbe, 2(2): 73-74.
30. Reeson A F, Jankovic T, Kasper M L, Rogers S, Austin A D. 2003. Application of 16S rDNA-DGGE to examine the bacterial ecology associated with a social wasp Vespula germanica. Insect Mol. Biol., 12(1): 85-91.
31. Robertson P A W, O'Dowd C, Burrells C, Williams P, Austin B. 2000. Use of Carnobacterium sp. as a probiotic for Atlantic salmon (Salmo salar L.) and rainbow trout (Oncorhynchus mykiss Walbaum). Aquaculture, 185(3-4): 235-243.
32. rd edn. Cold Spring Harbor Laboratory Press, New York, USA. p. 6. 4-6. 11.
33. Song X, Li S F, Wang C H, Xu J W, Yang Q L. 2009. Grass carp (Ctenopharyngodon idellus) genetic structure analysis among native populations in China and introduced populations in USA, Europe and Japan based on mitochondrial sequence. Acta Hydrobiologica Sinica, 33(4): 709-716. (in Chinese with English abstract).
34. Spanggaard B, Huber I, Nielsen J, Nielsen T, Appel K F, Gram L. 2000. The microflora of rainbow trout intestine: a comparison of traditional and molecular identification. Aquaculture, 182(1): 1-15.
35. Spor A, Koren O, Ley R. 2011. Unravelling the effects of the environment and host genotype on the gut microbiome. Nat. Rev. Microbiol., 9(4): 279-290.
36. Sugita H, Okano R, Suzuki Y, Iwai D, Mizukami M, Akijama N, Matsuura S. 2002. Antibacterial abilities of intestinal bacteria from larval and juvenile Japanese flounder against fish pathogens. Fisheries Sci., 68(5): 1 004-1 011.
37. Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4. 0. Mol. Biol. Evol., 24(8): 1 596-1 599.
38. Tsuchiya C, Sakata T, Sugita H. 2008. Novel ecological niche of Cetobacterium somerae, an anaerobic bacterium in the intestinal tracts of freshwater fish. Lett. Appl. Microbiol., 46(1): 43-48.
39. Verschuere L, Rombaut G, Sorgeloos P, Verstraete W. 2000. Probiotic bacteria as biological control agents in aquaculture. Microbiol. Mol. Biol. Rev., 64(4): 655-671.
40. Wakase S, Sasaki H, Itoh K, Otawa K, Kitazume O, Nonaka J, Satoh M, Sasaki T, Nakai Y. 2008. Investigation of the microbial community in a microbiological additive used in a manure composting process. Bioresour. Technol., 99(7): 2 687-2 693.
41. Williams M J, Bell J D, Gupta M V, Dey M, Ahmed M, Prein M, Child S, Gardiner P R, Brummett R, Jamu D. 2000. Responsible aquaculture can aid food problems. Nature, 406(6 797): 673.
42. Yan Q Y, Yu Y H, Feng W S, Deng W N, Song X H. 2007. Genetic diversity of plankton community as depicted by PCR-DGGE fingerprinting and its relation to morphological composition and environmental factors in Lake Donghu. Microb. Ecol., 54(2): 290-297.
43. Zhao J, Cao Y, Li S, Li J, Deng Y, Lu G. 2011. Population genetic structure and evolutionary history of grass carp Ctenopharyngodon idella in the Yangtze River, China. Environ. Biol. Fish., 90(1): 85-93.
44. Zhong G. 1990. The types, structure and results of the dikepond system in South China. Geojournal, 21(1-2): 83-89.
45. Zhu B, Zheng H, Qiao Y, Que Y, Chang J. 2009. Fish stocking program in the Yangtze River. Chinese Fisheries Econ., 27(2): 74-87. (in Chinese with English abstract).