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Volumn 42, Issue 1, 2010, Pages 47-56

Analysis of bacterial diversity in the intestine of grass carp (Ctenopharyngodon idellus) based on 16S rDNA gene sequences

Author keywords

16S rDNA; Ctenopharyngodon idellus; Grass carp; Intestinal bacterial diversity

Indexed keywords

ARTIFICIAL DIET; BACTERIUM; CYPRINID; DIET; DIGESTIVE SYSTEM; DIVERSITY INDEX; GENETIC ANALYSIS; PHYLOGENETICS; POND; REEDBED; SPECIES DIVERSITY; STOMACH CONTENT;

EID: 78650155792     PISSN: 1355557X     EISSN: 13652109     Source Type: Journal    
DOI: 10.1111/j.1365-2109.2010.02543.x     Document Type: Article
Times cited : (125)

References (55)
  • 2
    • 0035434675 scopus 로고    scopus 로고
    • Recovery of Streptococcus iniae from diseased fish previously vaccinated with a Streptococcus vaccine
    • Bachrach G., Zlotkin A., Hurvitz A., Evans D.L. & Eldar A. (2001) Recovery of Streptococcus iniae from diseased fish previously vaccinated with a Streptococcus vaccine. Applied and Environmental Microbiology 67, 3756-3758.
    • (2001) Applied and Environmental Microbiology , vol.67 , pp. 3756-3758
    • Bachrach, G.1    Zlotkin, A.2    Hurvitz, A.3    Evans, D.L.4    Eldar, A.5
  • 3
    • 33644951344 scopus 로고    scopus 로고
    • Bacterial diversity in organically-enriched fish farm sediments
    • Bissett A., Bowman J. & Burke C. (2006) Bacterial diversity in organically-enriched fish farm sediments. FEMS Microbiology Ecology 55, 48-56.
    • (2006) FEMS Microbiology Ecology , vol.55 , pp. 48-56
    • Bissett, A.1    Bowman, J.2    Burke, C.3
  • 4
    • 0038369933 scopus 로고    scopus 로고
    • Biodiversity, community structural shifts, and biogeography of prokaryotes within Antarctic continental shelf sediment
    • Bowman J.P. & McCuaig R.D. (2003) Biodiversity, community structural shifts, and biogeography of prokaryotes within Antarctic continental shelf sediment. Applied and Environmental Microbiology 69, 2463-2483.
    • (2003) Applied and Environmental Microbiology , vol.69 , pp. 2463-2483
    • Bowman, J.P.1    McCuaig, R.D.2
  • 5
    • 43049111377 scopus 로고    scopus 로고
    • Analysis of bacterial communities in soil by denaturing gradient gel electrophoresis and clone libraries as influenced by different reverse primers
    • Brons J.K. & Elsas J.D. (2008) Analysis of bacterial communities in soil by denaturing gradient gel electrophoresis and clone libraries as influenced by different reverse primers. Applied and Environmental Microbiology 74, 2717-2727.
    • (2008) Applied and Environmental Microbiology , vol.74 , pp. 2717-2727
    • Brons, J.K.1    Elsas, J.D.2
  • 6
    • 0010953106 scopus 로고
    • Biology and management of grass carp (Ctenopharyngodon idella, Cyprinidae) for vegetation control
    • a North American perspective.
    • Chilton E.W. & Muoneke M.I. (1983) Biology and management of grass carp (Ctenopharyngodon idella, Cyprinidae) for vegetation control: a North American perspective. Reviews in Fish Biology and Fisheries 2, 283-320.
    • (1983) Reviews in Fish Biology and Fisheries , vol.2 , pp. 283-320
    • Chilton, E.W.1    Muoneke, M.I.2
  • 8
    • 56849106496 scopus 로고    scopus 로고
    • The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing
    • Dethlefsen L., Huse S., Sogin M.L. & Relman D.A. (2008) The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing. PLoS Biology 6, 2383-2400.
    • (2008) PLoS Biology , vol.6 , pp. 2383-2400
    • Dethlefsen, L.1    Huse, S.2    Sogin, M.L.3    Relman, D.A.4
  • 10
    • 0033215537 scopus 로고    scopus 로고
    • The use of probiotics in aquaculture
    • Gatesoupe F.J. (1999) The use of probiotics in aquaculture. Aquaculture 180, 147-165.
    • (1999) Aquaculture , vol.180 , pp. 147-165
    • Gatesoupe, F.J.1
  • 12
    • 39049119384 scopus 로고    scopus 로고
    • A review on the interactions between gut microbiota and innate immunity of fish
    • Gómez G.D. & Balcázar J.L. (2008) A review on the interactions between gut microbiota and innate immunity of fish. FEMS Immunology and Medical Microbiology 52, 145-154.
    • (2008) FEMS Immunology and Medical Microbiology , vol.52 , pp. 145-154
    • Gómez, G.D.1    Balcázar, J.L.2
  • 13
    • 0000803388 scopus 로고
    • The population frequencies of species and estimation of population parameters
    • Good I.L. (1953) The population frequencies of species and estimation of population parameters. Biometrika 40, 237-264.
    • (1953) Biometrika , vol.40 , pp. 237-264
    • Good, I.L.1
  • 14
    • 0003816899 scopus 로고    scopus 로고
    • EcoSim: Null Models Software for Ecology, Version 7
    • Acquired Intelligence and Kesey-Bear, Jericho, VT, USA. Available at
    • Gotelli N.J. & Entsminger G.L. (2002) EcoSim: Null Models Software for Ecology, Version 7. Acquired Intelligence and Kesey-Bear, Jericho, VT, USA. Available at .
    • (2002)
    • Gotelli, N.J.1    Entsminger, G.L.2
  • 15
    • 0029660135 scopus 로고    scopus 로고
    • Phylogenetic analysis of the bacterial communities in marine sediments
    • Grey J.P. & Herwig R.P. (1996) Phylogenetic analysis of the bacterial communities in marine sediments. Applied and Environmental Microbiology 62, 4049-4059.
    • (1996) Applied and Environmental Microbiology , vol.62 , pp. 4049-4059
    • Grey, J.P.1    Herwig, R.P.2
  • 16
    • 78650149421 scopus 로고    scopus 로고
    • Isolation of cellulose-producing microbes from the intestine of grass carp (Ctenopharyngodon idellus)
    • He L., Zhang Z., Xie C., Hao B., Wang C. & He G. (2008) Isolation of cellulose-producing microbes from the intestine of grass carp (Ctenopharyngodon idellus). Environmental Biology of Fishes 272, 140-145.
    • (2008) Environmental Biology of Fishes , vol.272 , pp. 140-145
    • He, L.1    Zhang, Z.2    Xie, C.3    Hao, B.4    Wang, C.5    He, G.6
  • 17
    • 67650217559 scopus 로고    scopus 로고
    • ®) on growth performance, intestinal autochthonous bacterial community and non-specific immunity of hybrid tilapia (Oreochromis niloticus♀×O. aureus♂) cultured in cages
    • ®) on growth performance, intestinal autochthonous bacterial community and non-specific immunity of hybrid tilapia (Oreochromis niloticus♀×O. aureus♂) cultured in cages. Aquaculture 294, 99-107.
    • (2009) Aquaculture , vol.294 , pp. 99-107
    • He, S.1    Zhou, Z.2    Liu, Y.3    Shi, P.4    Yao, B.5    Ringø, E.6    Yoon, I.7
  • 18
    • 78650108441 scopus 로고    scopus 로고
    • Effects of three different DNA extraction methods on the analysis of bacteria community from different micro-ecological environments in a farming pond by PCR-DGGE
    • article in Chinese with English abstract).
    • He S., Zhou Z., Yao B. & Bai D. (2009) Effects of three different DNA extraction methods on the analysis of bacteria community from different micro-ecological environments in a farming pond by PCR-DGGE. Journal of Agricultural Science and Technology 11, 73-79 (article in Chinese with English abstract).
    • (2009) Journal of Agricultural Science and Technology , vol.11 , pp. 73-79
    • He, S.1    Zhou, Z.2    Yao, B.3    Bai, D.4
  • 19
    • 73149099402 scopus 로고    scopus 로고
    • Isolation of a novel strain of Bacillus pumilus from penaeid shrimp that is inhibitory against marine pathogens
    • Hill J.E., Baiano J.C. & Barnes A.C. (2009) Isolation of a novel strain of Bacillus pumilus from penaeid shrimp that is inhibitory against marine pathogens. Journal of Fish Diseases 32, 1007-1016.
    • (2009) Journal of Fish Diseases , vol.32 , pp. 1007-1016
    • Hill, J.E.1    Baiano, J.C.2    Barnes, A.C.3
  • 20
    • 0036399823 scopus 로고    scopus 로고
    • How host-microbial interactions shape the nutrient environment of the mammalian intestine
    • Hooper L.V., Midtvedt T. & Gordon J.I. (2002) How host-microbial interactions shape the nutrient environment of the mammalian intestine. Annual Review Nutrition 22, 283-307.
    • (2002) Annual Review Nutrition , vol.22 , pp. 283-307
    • Hooper, L.V.1    Midtvedt, T.2    Gordon, J.I.3
  • 21
    • 62149115657 scopus 로고    scopus 로고
    • Gene diversity of beta-propeller phytase in the intestinal contents of grass carp insight into the major phosphorus release from phytate in nature
    • Huang H., Shi P., Wang Y., Luo H., Shao N., Wang G., Yang P. & Yao B. (2009) Gene diversity of beta-propeller phytase in the intestinal contents of grass carp insight into the major phosphorus release from phytate in nature. Applied and Environmental Microbiology 75, 1508-1516.
    • (2009) Applied and Environmental Microbiology , vol.75 , pp. 1508-1516
    • Huang, H.1    Shi, P.2    Wang, Y.3    Luo, H.4    Shao, N.5    Wang, G.6    Yang, P.7    Yao, B.8
  • 22
    • 0842308827 scopus 로고    scopus 로고
    • Phylogenetic analysis and in situ identification of the intestinal microbial community of rainbow trout (Oncorhynchus mykiss, Walbaum)
    • Huber I., Spanggaard B., Appel K.F., Rossen L., Nielsen T. & Gram L. (2004) Phylogenetic analysis and in situ identification of the intestinal microbial community of rainbow trout (Oncorhynchus mykiss, Walbaum). Journal of Applied Microbiology 96, 117-132.
    • (2004) Journal of Applied Microbiology , vol.96 , pp. 117-132
    • Huber, I.1    Spanggaard, B.2    Appel, K.F.3    Rossen, L.4    Nielsen, T.5    Gram, L.6
  • 24
    • 68849129314 scopus 로고    scopus 로고
    • Phenotypic variation in Lactococcus lactis subsp. lactis isolates derived from intestinal tracts of marine and freshwater fish
    • Itoi S., Yuasa K., Washio S., Abe T., Ikuno E. & Sugita H. (2009) Phenotypic variation in Lactococcus lactis subsp. lactis isolates derived from intestinal tracts of marine and freshwater fish. Journal of Applied Microbiology 107, 867-874.
    • (2009) Journal of Applied Microbiology , vol.107 , pp. 867-874
    • Itoi, S.1    Yuasa, K.2    Washio, S.3    Abe, T.4    Ikuno, E.5    Sugita, H.6
  • 25
    • 58849083220 scopus 로고    scopus 로고
    • The sphingolipid transporter spns functions in migration of zebrafish myocardial precursors
    • Kawahara A., Nishi T., Hisano Y., Fukui H., Yamaguchi A. & Mochizuki N. (2009) The sphingolipid transporter spns functions in migration of zebrafish myocardial precursors. Science 323, 524-527.
    • (2009) Science , vol.323 , pp. 524-527
    • Kawahara, A.1    Nishi, T.2    Hisano, Y.3    Fukui, H.4    Yamaguchi, A.5    Mochizuki, N.6
  • 26
    • 34250639282 scopus 로고    scopus 로고
    • Microbial diversity of intestinal contents and mucus in rainbow trout (Oncorhynchus mykiss)
    • Kim D.-H., Brunt J. & Austin B. (2007) Microbial diversity of intestinal contents and mucus in rainbow trout (Oncorhynchus mykiss). Journal of Applied Microbiology 102, 1654-1664.
    • (2007) Journal of Applied Microbiology , vol.102 , pp. 1654-1664
    • Kim, D.1    Brunt, J.2    Austin, B.3
  • 27
    • 0001578004 scopus 로고
    • Probiotics growth promoting factors produced by micro-organisms
    • Lilly D.M. & Stillwell R.H. (1965) Probiotics growth promoting factors produced by micro-organisms. Science 147, 747-748.
    • (1965) Science , vol.147 , pp. 747-748
    • Lilly, D.M.1    Stillwell, R.H.2
  • 28
    • 78650119782 scopus 로고    scopus 로고
    • Effects of Andrographis paniculata on the variation of intestinal microflora of Ctenopharyngodon idellus
    • article in Chinese with English abstract).
    • Luo L., Chen X. & Cai X. (2001) Effects of Andrographis paniculata on the variation of intestinal microflora of Ctenopharyngodon idellus. Journal of Fisheries of China 25, 232-237. (article in Chinese with English abstract).
    • (2001) Journal of Fisheries of China , vol.25 , pp. 232-237
    • Luo, L.1    Chen, X.2    Cai, X.3
  • 29
    • 0030628034 scopus 로고    scopus 로고
    • Human colonic microbiota
    • ecology, physiology and metabolic potential of intestinal bacteria.
    • Macfarlane G.T. & Macfarlane S. (1997) Human colonic microbiota: ecology, physiology and metabolic potential of intestinal bacteria. Scandinavian Journal of Gastroenterology 32 (Suppl. 222), 3-9.
    • (1997) Scandinavian Journal of Gastroenterology , vol.32 , Issue.SUPPL. 222 , pp. 3-9
    • Macfarlane, G.T.1    Macfarlane, S.2
  • 32
    • 65549084931 scopus 로고    scopus 로고
    • Screening and distributing features of bacteria with hydantoinase and carbamoylase
    • Mei Y., He B., Liu N. & Ouyang P. (2009) Screening and distributing features of bacteria with hydantoinase and carbamoylase. Microbiology Research 164, 322-329.
    • (2009) Microbiology Research , vol.164 , pp. 322-329
    • Mei, Y.1    He, B.2    Liu, N.3    Ouyang, P.4
  • 33
    • 78650144169 scopus 로고    scopus 로고
    • China Fishery Products Annual 2008
    • Ministry of Agriculture, China China Agriculture Press, Beijing, China.
    • Ministry of Agriculture, China (2009) China Fishery Products Annual 2008. China Agriculture Press, Beijing, China.
    • (2009)
  • 34
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer G., Waal E.C. & Uitterlinden A.G. (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Applied and Environmental Microbiology 59, 695-700.
    • (1993) Applied and Environmental Microbiology , vol.59 , pp. 695-700
    • Muyzer, G.1    Waal, E.C.2    Uitterlinden, A.G.3
  • 35
    • 0022422655 scopus 로고
    • Nearly all single base substitutions in DNA fragments joined to a GC-clamp can be detected by denaturing gradient gel electrophoresis
    • Myers R.M., Fischer S.G., Lerman L.S. & Maniatis T. (1985) Nearly all single base substitutions in DNA fragments joined to a GC-clamp can be detected by denaturing gradient gel electrophoresis. Nucleic Acids Research 13, 3131-3145.
    • (1985) Nucleic Acids Research , vol.13 , pp. 3131-3145
    • Myers, R.M.1    Fischer, S.G.2    Lerman, L.S.3    Maniatis, T.4
  • 36
    • 85042619897 scopus 로고    scopus 로고
    • Molecular analysis of microbiota along the digestive tract of juvenile Atlantic salmon (Salmo salar L.)
    • Navarrete P., Espejo R.T. & Romero J. (2009) Molecular analysis of microbiota along the digestive tract of juvenile Atlantic salmon (Salmo salar L.). Microbial Ecology 57, 550-561.
    • (2009) Microbial Ecology , vol.57 , pp. 550-561
    • Navarrete, P.1    Espejo, R.T.2    Romero, J.3
  • 38
    • 0000952661 scopus 로고
    • Comparison between the bacterial flora associated with fingerling rainbow trout cultured in two different hatcheries in the north-west of Spain
    • Nieto T.P., Toranzo A.E. & Barja J.L. (1984) Comparison between the bacterial flora associated with fingerling rainbow trout cultured in two different hatcheries in the north-west of Spain. Aquaculture 42, 193-206.
    • (1984) Aquaculture , vol.42 , pp. 193-206
    • Nieto, T.P.1    Toranzo, A.E.2    Barja, J.L.3
  • 39
    • 0035881132 scopus 로고    scopus 로고
    • Interactions between fish larvae and bacteria in marine aquaculture
    • Olafsen J. (2001) Interactions between fish larvae and bacteria in marine aquaculture. Aquaculture 200, 223-247.
    • (2001) Aquaculture , vol.200 , pp. 223-247
    • Olafsen, J.1
  • 40
    • 0030982247 scopus 로고    scopus 로고
    • A molecular view of microbial diversity and the biosphere
    • Pace N.R. (1997) A molecular view of microbial diversity and the biosphere. Science 276, 734-740.
    • (1997) Science , vol.276 , pp. 734-740
    • Pace, N.R.1
  • 42
    • 33745485829 scopus 로고    scopus 로고
    • 16S rDNA-Based analysis of dominant bacterial populations associated with early life stages of coho salmon (Oncorhynchus kisutch)
    • Romero J. & Navarrete P. (2006) 16S rDNA-Based analysis of dominant bacterial populations associated with early life stages of coho salmon (Oncorhynchus kisutch). Microbial Ecology 51, 422-430.
    • (2006) Microbial Ecology , vol.51 , pp. 422-430
    • Romero, J.1    Navarrete, P.2
  • 43
    • 0034141962 scopus 로고    scopus 로고
    • The microflora of rainbow trout intestine
    • a comparison of traditional and molecular identification.
    • Spanggaard B., Huber I., Nielsen J., Nielsen T., Appel K.F. & Gram L. (2000) The microflora of rainbow trout intestine: a comparison of traditional and molecular identification. Aquaculture 182, 1-15.
    • (2000) Aquaculture , vol.182 , pp. 1-15
    • Spanggaard, B.1    Huber, I.2    Nielsen, J.3    Nielsen, T.4    Appel, K.F.5    Gram, L.6
  • 45
    • 0030067991 scopus 로고    scopus 로고
    • Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
    • Suzuki B. & Giovannoni S.J. (1996) Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Applied and Environmental Microbiology 62, 625-630.
    • (1996) Applied and Environmental Microbiology , vol.62 , pp. 625-630
    • Suzuki, B.1    Giovannoni, S.J.2
  • 47
    • 0001338516 scopus 로고
    • Obligate anaerobic bacteria in the gastrointestinal microflora of the grass carp (Ctenopharyngodon idella), goldfish (Carassius auratus), and rainbow trout (Salmo gairdneri)
    • Trust T.J., Bull L.M., Currie B.R. & Buckley J.T. (1979) Obligate anaerobic bacteria in the gastrointestinal microflora of the grass carp (Ctenopharyngodon idella), goldfish (Carassius auratus), and rainbow trout (Salmo gairdneri). Journal of the Fisheries Research Board of Canada 36, 1174-1179.
    • (1979) Journal of the Fisheries Research Board of Canada , vol.36 , pp. 1174-1179
    • Trust, T.J.1    Bull, L.M.2    Currie, B.R.3    Buckley, J.T.4
  • 48
    • 0025903592 scopus 로고
    • Rapid method for direct extraction of DNA from soil and sediments
    • Tsai Y.L. & Olson B.H. (1991) Rapid method for direct extraction of DNA from soil and sediments. Applied and Environmental Microbiology 57, 1070-1074.
    • (1991) Applied and Environmental Microbiology , vol.57 , pp. 1070-1074
    • Tsai, Y.L.1    Olson, B.H.2
  • 49
    • 0032696569 scopus 로고    scopus 로고
    • Microbial diversity on marinesediments from Sagami Bay and Tokyo Bay, Japan, as determined by 16S rRNA gene analysis
    • Urakawa H., Kita-Tsukamoto K. & Ohwada K. (1999) Microbial diversity on marinesediments from Sagami Bay and Tokyo Bay, Japan, as determined by 16S rRNA gene analysis. Microbiology 145, 3305-3315.
    • (1999) Microbiology , vol.145 , pp. 3305-3315
    • Urakawa, H.1    Kita-Tsukamoto, K.2    Ohwada, K.3
  • 51
    • 77955979110 scopus 로고    scopus 로고
    • Identification of the adherent microbiota on gills and skins of poly-cultured gibel carp (Carassius auratus gibelio) and bluntnose black bream (Megalorama mablycephala Yih)
    • doi: DOI: 10.1111/j.1365-2109.2009.0259.x.
    • Wang W., Zhou Z., He S., Liu Y., Cao Y., Shi P., Yao B. & Ringø E. (2010) Identification of the adherent microbiota on gills and skins of poly-cultured gibel carp (Carassius auratus gibelio) and bluntnose black bream (Megalorama mablycephala Yih). Aquaculture Research, doi: DOI: 10.1111/j.1365-2109.2009.0259.x.
    • (2010) Aquaculture Research
    • Wang, W.1    Zhou, Z.2    He, S.3    Liu, Y.4    Cao, Y.5    Shi, P.6    Yao, B.7    Ringø, E.8
  • 52
    • 70349437027 scopus 로고    scopus 로고
    • Characterization of the intestinal microbiota of two Antarctic Notothenioid fish species
    • Ward N., Blaire S., Penn K., Methé B. & Detrich H.W. (2009) Characterization of the intestinal microbiota of two Antarctic Notothenioid fish species. Extremophiles 13, 679-685.
    • (2009) Extremophiles , vol.13 , pp. 679-685
    • Ward, N.1    Blaire, S.2    Penn, K.3    Methé, B.4    Detrich, H.W.5
  • 53
    • 0025895719 scopus 로고
    • Isolation and characterization of turbot (Scophtalmus maximus)-associated bacteria with inhibitory effects against Vibrio anguillarum
    • Westerdahl A., Olsson J.C., Kjelleberg S. & Conway P.L. (1991) Isolation and characterization of turbot (Scophtalmus maximus)-associated bacteria with inhibitory effects against Vibrio anguillarum. Applied and Environmental Microbiology 57, 2223-2228.
    • (1991) Applied and Environmental Microbiology , vol.57 , pp. 2223-2228
    • Westerdahl, A.1    Olsson, J.C.2    Kjelleberg, S.3    Conway, P.L.4
  • 54
    • 78650140500 scopus 로고    scopus 로고
    • A preliminary study on the influence of different feeding stuff on intestinal microflora of grass carp (Ctenopharyngodon idellus)
    • article in Chinese with English abstract).
    • Zhou W., Chen X., Zhang D. & Chen C. (1998) A preliminary study on the influence of different feeding stuff on intestinal microflora of grass carp (Ctenopharyngodon idellus). Journal of Huazhong Agricultural University 17, 252-256. (article in Chinese with English abstract).
    • (1998) Journal of Huazhong Agricultural University , vol.17 , pp. 252-256
    • Zhou, W.1    Chen, X.2    Zhang, D.3    Chen, C.4
  • 55
    • 67349158891 scopus 로고    scopus 로고
    • Effects of dietary potassium diformate (KDF) on growth performance, feed conversion and intestinal bacterial community of hybrid tilapia (Oreochromis niloticus♀×O. aureus♂)
    • Zhou Z., Liu Y., He S., Shi P., Gao X., Yao B. & Ringø E. (2009) Effects of dietary potassium diformate (KDF) on growth performance, feed conversion and intestinal bacterial community of hybrid tilapia (Oreochromis niloticus♀×O. aureus♂). Aquaculture 291, 89-94.
    • (2009) Aquaculture , vol.291 , pp. 89-94
    • Zhou, Z.1    Liu, Y.2    He, S.3    Shi, P.4    Gao, X.5    Yao, B.6    Ringø, E.7


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