Compostimonas suwonensis gen. nov., sp. nov., isolated from spent mushroom compost

International Journal of Systematic and Evolutionary Microbiology

Volumn 62, Issue 10, 2012, Pages 2410-2416

  Kim, Soo Jin ^a   Tamura, Tomohiko ^b   Hamada, Moriyuki ^b   Ahn, Jae Hyung ^a   Weon, Hang Yeon ^a   Park, In Cheol ^a   Suzuki, Ken ichiro ^b   Kwon, Soon Wo ^a  

^a National Institute of Agricultural Science   (South Korea)

^b NATIONAL INSTITUTE OF TECHNOLOGY AND EVALUATION   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CARDIOLIPIN; FATTY ACID; GLYCOLIPID; MENAQUINONE; PEPTIDOGLYCAN; PHOSPHATIDYLGLYCEROL; RNA 16S;

AGARICUS BISPORUS; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; CELL STRUCTURE; CHEMOTAXONOMY; COMPOST; COMPOSTIMONAS SUWONENSIS; DNA BASE COMPOSITION; GRAM POSITIVE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SOUTH KOREA;

ACTINOMYCETALES; AGARICALES; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CELL WALL; DNA, BACTERIAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; PHYLOGENY; REPUBLIC OF KOREA; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL; SOIL MICROBIOLOGY; VITAMIN K 2;

BASIDIOMYCOTA; FRIGORIBACTERIUM FAENI; MICROBACTERIACEAE; POSIBACTERIA;

EID: 84867183650     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.036343-0     Document Type: Article

References (48)

1. An, S. Y., Xiao, T. & Yokota, A. (2008). Schumannella luteola gen. nov., sp. nov., a novel genus of the family Microbacteriaceae. J Gen Appl Microbiol 54, 253-258.
2. Bendinger, B., Kroppenstedt, R. M., Klatte, S. & Altendorf, K. (1992). Chemotaxonomic differentiation of coryneform bacteria isolated from biofilters. Int J Syst Bacteriol 42, 474-486.
3. Bora, N., Vancanneyt, M., Gelsomino, R., Snauwaert, C., Swings, J., Jones, A. L., Ward, A. C., Chamba, J. F., Kroppenstedt, R. M. & other authors (2008). Mycetocola reblochoni sp. nov., isolated from the surface microbial flora of Reblochon cheese. Int J Syst Evol Microbiol 58, 2687-2693.
4. Breznak, J. A. & Costilow, R. N. (1994). Physicochemical factors in growth. In Methods for General and Molecular Bacteriology, pp. 137-154. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
5. Chun, J., Lee, J.-H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y.-W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
6. Collins, M. D. & Bradbury, J. F. (1992). The genera Agromyces, Aureobacterium, Clavibacter, Curtobacterium, and Microbacterium. In The Prokaryotes, 2nd edn, pp. 1355-1368. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K. H. Schleifer. New York: Springer.
7. Cook, D. M., Henriksen, E. D., Rogers, T. E. & Peterson, J. D. (2008). Klugiella xanthotipulae gen. nov., sp. nov., a novel member of the family Microbacteriaceae. Int J Syst Evol Microbiol 58, 2779-2782.
8. Dastager, S. G., Lee, J.-C., Ju, Y.-J., Park, D.-J. & Kim, C.-J. (2008a). Cryobacterium mesophilum sp. nov., a novel mesophilic bacterium. Int J Syst Evol Microbiol 58, 1241-1244.
9. Dastager, S. G., Lee, J.-C., Ju, Y.-J., Park, D.-J. & Kim, C.-J. (2008b). Frigoribacterium mesophilum sp. nov., a mesophilic actinobacterium isolated from Bigeum Island, Korea. Int J Syst Evol Microbiol 58, 1869-1872.
10. Dorofeeva, L. V., Evtushenko, L. I., Krausova, V. I., Karpov, A. V., Subbotin, S. A. & Tiedje, J. M. (2002). Rathayibacter caricis sp. nov. and Rathayibacter festucae sp. nov., isolated from the phyllosphere of Carex sp. and the leaf gall induced by the nematode Anguina graminis on Festuca rubra L., respectively. Int J Syst Evol Microbiol 52, 1917-1923.
11. Evtushenko, L. I., Dorofeeva, L. V., Subbotin, S. A., Cole, J. R. & Tiedje, J. M. (2000). Leifsonia poae gen. nov., sp. nov., isolated from nematode galls on Poa annua, and reclassification of 'Corynebacterium aquaticum' Leifson 1962 as Leifsonia aquatica (ex Leifson 1962) gen. nov., nom. rev., comb. nov. and Clavibacter xyli Davis et al. 1984 with two subspecies as Leifsonia xyli (Davis et al. 1984) gen. nov., comb. nov. Int J Syst Evol Microbiol 50, 371-380.
12. Greene, A. C., Euzéby, J. P., Tindall, B. J. & Patel, B. K. (2009). Proposal of Frondihabitans gen. nov. to replace the illegitimate genus name Frondicola Zhang et al. 2007. Int J Syst Evol Microbiol 59, 447-448.
13. Groth, I., Schumann, P., Weiss, N., Martin, K. & Rainey, F. A. (1996). Agrococcus jenensis gen. nov., sp. nov., a new genus of actinomycetes with diaminobutyric acid in the cell wall. Int J Syst Bacteriol 46, 234-239.
14. Hamada, M., Iino, T., Iwami, T., Harayama, S., Tamura, T. & Suzuki, K. (2010). Mobilicoccus pelagius gen. nov., sp. nov. and Piscicoccus intestinalis gen. nov., sp. nov., two new members of the family Dermatophilaceae, and reclassification of Dermatophilus chelonae (Masters et al. 1995) as Austwickia chelonae gen. nov., comb. nov. J Gen Appl Microbiol 56, 427-436.
15. Han, S. K., Nedashkovskaya, O. I., Mikhailov, V. V., Kim, S. B. & Bae, K. S. (2003). Salinibacterium amurskyense gen. nov., sp. nov., a novel genus of the family Microbacteriaceae from the marine environment. Int J Syst Evol Microbiol 53, 2061-2066.
16. Kämpfer, P., Rainey, F. A., Andersson, M. A., Nurmiaho Lassila, E.-L., Ulrych, U., Busse, H.-J., Weiss, N., Mikkola, R. & Salkinoja-Salonen, M. (2000). Frigoribacterium faeni gen. nov., sp. nov., a novel psychrophilic genus of the family Microbacteriaceae. Int J Syst Evol Microbiol 50, 355-363.
17. Katayama, T., Kato, T., Tanaka, M., Douglas, T. A., Brouchkov, A., Fukuda, M., Tomita, F. & Asano, K. (2009). Glaciibacter superstes gen. nov., sp. nov., a novel member of the family Microbacteriaceae isolated from a permafrost ice wedge. Int J Syst Evol Microbiol 59, 482-486.
18. Kim, S.-J. & Lee, S.-S. (2011). Amnibacterium kyonggiense gen. nov., sp. nov., a new member of the family Microbacteriaceae. Int J Syst Evol Microbiol 61, 155-159.
19. Lee, S. D. (2007). Labedella gwakjiensis gen. nov., sp. nov., a novel actinomycete of the family Microbacteriaceae. Int J Syst Evol Microbiol 57, 2498-2502.
20. Lee, S. D. (2010). Frondihabitans peucedani sp. nov., an actinobacterium isolated from rhizosphere soil, and emended description of the genus Frondihabitans Greene et al. 2009. Int J Syst Evol Microbiol 60, 1740-1744.
21. Lee, D. W., Lee, J. M., Seo, J. P., Schumann, P., Kim, S. J. & Lee, S. D. (2008). Phycicola gilvus gen. nov., sp. nov., an actinobacterium isolated from living seaweed. Int J Syst Evol Microbiol 58, 1318-1323.
22. Li, H.-R., Yu, Y., Luo, W. & Zeng, Y.-X. (2010). Marisediminicola antarctica gen. nov., sp. nov., an actinobacterium isolated from the Antarctic. Int J Syst Evol Microbiol 60, 2535-2539.
23. Ludwig, W., Strunk, O., Westram, R., Richter, L., Meier, H., Yadhukumar, Buchner, A., Lai, T., Steppi, S. & other authors, (2004). ARB: a software environment for sequence data. Nucleic Acids Res 32, 1363-1371.
24. Männistö, M. K., Schumann, P., Rainey, F. A., Kämpfer, P., Tsitko, I., Tiirola, M. A. & Salkinoja-Salonen, M. S. (2000). Subtercola boreus gen. nov., sp. nov. and Subtercola frigoramans sp. nov., two new psychrophilic actinobacteria isolated from boreal groundwater. Int J Syst Evol Microbiol 50, 1731-1739.
25. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
26. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
27. Park, Y.-H., Suzuki, K., Yim, D.-G., Lee, K.-C., Kim, E., Yoon, J., Kim, S., Kho, Y.-H., Goodfellow, M. & Komagata, K. (1993). Suprageneric classification of peptidoglycan group B actinomycetes by nucleotide sequencing of 5S ribosomal RNA. Antonie van Leeuwenhoek 64, 307-313.
28. Pruesse, E., Quast, C., Knittel, K., Fuchs, B. M., Ludwig, W., Peplies, J. & Glöckner, F. O. (2007). SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35, 7188-7196.
29. Reddy, G. S. N., Pradhan, S., Manorama, R. & Shivaji, S. (2010). Cryobacterium roopkundense sp. nov., a psychrophilic bacterium isolated from glacial soil. Int J Syst Evol Microbiol 60, 866-870.
30. Sasaki, J., Chijimatsu, M. & Suzuki, K.-I. (1998). Taxonomic significance of 2, 4-diaminobutyric acid isomers in the cell wall peptidoglycan of actinomycetes and reclassification of Clavibacter toxicus as Rathayibacter toxicus comb. nov. Int J Syst Bacteriol 48, 403-410.
31. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
32. Schleifer, K. H. & Kandler, O. (1972). Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36, 407-477.
33. Sheridan, P. P., Loveland-Curtze, J., Miteva, V. I. & Brenchley, J. E. (2003). Rhodoglobus vestalii gen. nov., sp. nov., a novel psychrophilic organism isolated from an Antarctic Dry Valley lake. Int J Syst Evol Microbiol 53, 985-994.
34. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
35. Stackebrandt, E., Rainey, F. A. & Ward-Rainey, N. L. (1997). Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 47, 479-491.
36. Suzuki, K., Sasaki, J., Uramoto, M., Nakase, T. & Komagata, K. (1997). Cryobacterium psychrophilum gen. nov., sp. nov., nom. rev., comb. nov., an obligately psychrophilic actinomycete to accommodate 'Curtobacterium psychrophilum' Inoue and Komagata 1976. Int J Syst Bacteriol 47, 474-478.
37. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
38. Tiago, I., Pires, C., Mendes, V., Morais, P. V., da Costa, M. & Veri{dotless}́ssimo, A. (2005). Microcella putealis gen. nov., sp. nov., a grampositive alkaliphilic bacterium isolated from a nonsaline alkaline groundwater. Syst Appl Microbiol 28, 479-487.
39. Tiago, I., Morais, P. V., da Costa, M. S. & Veri{dotless}́ssimo, A. (2006). Microcella alkaliphila sp. nov., a novel member of the family Microbacteriaceae isolated from a non-saline alkaline groundwater, and emended description of the genus Microcella. Int J Syst Evol Microbiol 56, 2313-2316.
40. Tsukamoto, T., Takeuchi, M., Shida, O., Murata, H. & Shirata, A. (2001). Proposal of Mycetocola gen. nov. in the family Microbacteriaceae and three new species, Mycetocola saprophilus sp. nov., Mycetocola tolaasinivorans sp. nov. and Mycetocola lacteus sp. nov., isolated from cultivated mushroom, Pleurotus ostreatus. Int J Syst Evol Microbiol 51, 937-944.
41. Uchida, K. & Aida, K. (1984). An improved method for the glycolate test for simple identification of acyl type of bacterial cell walls. J Gen Appl Microbiol 30, 131-134.
42. Vaz-Moreira, I., Nobre, M. F., Ferreira, A. C. S., Schumann, P., Nunes, O. C. & Manaia, C. M. (2008). Humibacter albus gen. nov., sp. nov., isolated from sewage sludge compost. Int J Syst Evol Microbiol 58, 1014-1018.
43. Weon, H.-Y., Kim, B.-Y., Yoo, S.-H., Lee, S.-Y., Kwon, S.-W., Go, S.-J. & Stackebrandt, E. (2006). Niastella koreensis gen. nov., sp. nov. and Niastella yeongjuensis sp. nov., novel members of the phylum Bacteroidetes, isolated from soil cultivated with Korean ginseng. Int J Syst Evol Microbiol 56, 1777-1782.
44. Yoon, J.-H., Kang, S.-J., Schumann, P. & Oh, T.-K. (2006). Yonghaparkia alkaliphila gen. nov., sp. nov., a novel member of the family Microbacteriaceae isolated from an alkaline soil. Int J Syst Evol Microbiol 56, 2415-2420.
45. Zgurskaya, H. I., Evtushenko, L. I., Akimov, V. N. & Kalakoutskii, L. V. (1993). Rathayibacter gen. nov., including the species Rathayibacter rathayi comb. nov., Rathayibacter tritici comb. nov., Rathayibacter iranicus comb. nov., and six strains from annual grasses. Int J Syst Bacteriol 43, 143-149.
46. Zhang, D.-C., Wang, H.-X., Cui, H.-L., Yang, Y., Liu, H.-C., Dong, X.-Z. & Zhou, P.-J. (2007a). Cryobacterium psychrotolerans sp. nov., a novel psychrotolerant bacterium isolated from the China No. 1 glacier. Int J Syst Evol Microbiol 57, 866-869.
47. Zhang, L., Xu, Z. & Patel, B. K. C. (2007b). Frondicola australicus gen. nov., sp. nov., isolated from decaying leaf litter from a pine forest. Int J Syst Evol Microbiol 57, 1177-1182.
48. Zhi, X.-Y., Li, W.-J. & Stackebrandt, E. (2009). An update of the structure and 16S rRNA gene sequence-based definition of higher ranks of the class Actinobacteria, with the proposal of two new suborders and four new families and emended descriptions of the existing higher taxa. Int J Syst Evol Microbiol 59, 589-608.