Frondihabitans peucedani sp. nov., an actinobacterium isolated from rhizosphere soil, and emended description of the genus Frondihabitans Greene et al. 2009

International Journal of Systematic and Evolutionary Microbiology

Volumn 60, Issue 8, 2010, Pages 1740-1744

  Lee, Soon Dong ^a  

^a Jeju National University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

CATALASE; DIAMINO ACID; GLYCOLIPID; MENAQUINONE; MYCOLIC ACID; ORNITHINE; OXIDOREDUCTASE; PEPTIDOGLYCAN; PHOSPHATIDYLGLYCEROL; PHOSPHOLIPID; RIBOSOME RNA;

ACTINOBACTERIA; ARTICLE; BACTERIUM ISOLATE; DNA DNA HYBRIDIZATION; FRONDIHABITANS; FRONDIHABITANS AUSTRALICUS; FRONDIHABITANS PEUCEDANI; GC RICH SEQUENCE; GRAM POSITIVE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; RHIZOSPHERE; RNA GENE; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SOUTH KOREA;

ACTINOMYCETALES; ANGIOSPERMS; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT ROOTS; RNA, RIBOSOMAL, 16S; SOIL MICROBIOLOGY;

MICROBACTERIACEAE; PEUCEDANUM JAPONICUM;

EID: 77955617868     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.017947-0     Document Type: Article

References (23)

1. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
2. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
3. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
4. Felsenstein, J. (1993). PHYLIP (phylogeny inference package), version 3.5c. Distributed by the author. Department of Genetics, University of Washington, Seattle, USA.
5. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
6. Gordon, R. E., Barnett, D. A., Handerhan, J. E. & Pang, C. H.-N. (1974). Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain. Int J Syst Bacteriol 24, 54-63.
7. Greene, A. C., Euzéby, J. P., Tindall, B. J. & Petal, B. K. C. (2009). Proposal of Frondihabitans gen. nov. to replace the illegitimate genus name Frondicola Zhang et al. 2007. Int J Syst Evol Microbiol 59, 447-448.
8. Hancock, I. C. (1994). Analysis of cell wall constituents of Gram-positive bacteria. In Chemical Methods in Prokaryotic Systematics, pp. 63-84. Edited by M. Goodfellow & A. G. O'Donnell. Chichester: Wiley.
9. Huß, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192. (Pubitemid 13066307)
10. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
11. Kroppenstedt, R. M. (1985). Fatty acid and menaquinone analysis of actinomycetes and related organisms. In Chemical Methods in Bacterial Systematics (Society for Applied Bacteriology Technical Series vol. 20), pp. 173-199. Edited by M. Goodfellow & D. E. Minnikin. New York: Academic Press.
12. Lee, S. D. (2007). Labedella gwakjiensis gen. nov., sp. nov., a novel genus of the family Microbacteriaceae. Int J Syst Evol Microbiol 57, 2498-2502.
13. Lee, S. D. (2009). Amycolatopsis ultiminotia sp. nov., isolated from rhizosphere soil, and emended description of the genus Amycolatopsis. Int J Syst Evol Microbiol 59, 1401-1404.
14. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
15. Minnikin, D. E., Alshamaony, L. & Goodfellow, M. (1975). Differentiation of Mycobacterium, Nocardia, and related taxa by thin layer chromatographic analysis of whole-cell methanolysates. J Gen Microbiol 88, 200-204.
16. Minnikin, D. E., Hutchinson, I. G., Caldicott, A. B. & Goodfellow, M. (1980). Thin-layer chromatography of methanolysates of mycolic acid-containing bacteria. J Chromatogr A 188, 221-233.
17. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
18. Schleifer, K. H. & Kandler, O. (1972). Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36, 407-477.
19. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313-340.
20. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
21. Uchida, K. & Aida, K. (1984). An improved method for the glycolate test for simple identification of acyl type of bacterial cell walls. J Gen Appl Microbiol 30, 131-134. (Pubitemid 14034552)
22. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
23. Zhang, L., Xu, Z. & Patel, B. K. C. (2007). Frondicola australicus gen. nov., sp. nov., isolated from decaying leaf litter of a pine forest. Int J Syst Evol Microbiol 57, 1177-1182. (Pubitemid 46958851)