Mycetocola reblochoni sp. nov., isolated from the surface microbial flora of Reblochon cheese

International Journal of Systematic and Evolutionary Microbiology

Volumn 58, Issue 12, 2008, Pages 2687-2693

  Bora, Nagamani ^a   Vancanneyt, Marc ^b   Gelsomino, Roberto ^b   Snauwaert, Cindy ^b   Swings, Jean ^b   Jones, Amanda L ^a   Ward, Alan C ^a   Chamba, Jean Francois ^c   Kroppenstedt, Reiner M ^d   Schumann, Peter ^d   Goodfellow, Michael ^a  

^a NEWCASTLE UNIVERSITY   (United Kingdom)

^b GHENT UNIVERSITY   (Belgium)

^c Institut Technique Francais des Fromages   (France)

^d LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S; FARNOQUINONE; FATTY ACID;

ARTICLE; BACILLUS (ROD SHAPED BACTERIUM); BACTERIAL STRAIN; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CHEESE; CHEMOTAXONOMY; CONTROLLED STUDY; GRAM POSITIVE BACTERIUM; MICROFLORA; MYCETOCOLA REBLOCHONI; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; RNA SEQUENCE; TAXONOMIC RANK; ACTINOMYCETALES; CHEMISTRY; CLASSIFICATION; GENETICS; MICROBIOLOGY; MOLECULAR GENETICS; PHYSIOLOGY; SPECIES DIFFERENCE;

MICROBACTERIACEAE; MYCETOCOLA; POSIBACTERIA;

ACTINOMYCETALES; CHEESE; ELECTROPHORESIS, POLYACRYLAMIDE GEL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SPECIES SPECIFICITY; VITAMIN K 2;

EID: 58949093123     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64201-0     Document Type: Article

References (40)

1. Brennan, N. M., Brown, R., Goodfellow, M., Ward, A. C., Beresford, T. P., Simpson, P. J., Fox, P. F. & Cogan, T. M. (2001a). Corynebacterium mooreparkense sp. nov. and Corynebacterium casei sp. nov., isolated from the surface of a smear-ripened cheese. Int J Syst Evol Microbiol 51, 843-852.
2. Brennan, N. M., Brown, R., Goodfellow, M., Ward, A. C., Beresford, T. P., Vancanneyt, M., Cogan, T. M. & Fox, P. F. (2001b). Microbacterium gubbeenense sp. nov., from the surface of a smear-ripened cheese. Int J Syst Evol Microbiol 51, 1969-1976.
3. Brennan, N. M., Ward, A. C., Beresford, T. P., Fox, P. F., Goodfellow, M. & Cogan, T. M. (2002). Biodiversity of the bacterial flora on the surface of a smear cheese. Appl Environ Microbiol 68, 820-830.
4. Eliskases-Lechner, F. & Ginzinger, W. (1995). The bacterial flora of surface-ripened cheeses with special regard to coryneforms. Lait 75, 571-584.
5. Evtushenko, L. I. & Takeuchi, M. (2006). The family Microbacteriaceae. In The Prokaryotes: a Handbook on the Biology of Bacteria, 3rd edn, vol. 3, pp. 1020-1098. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K. H. Schleifer & E. Stackebrandt. New York: Springer.
6. Evtushenko, L. I., Dorofeeva, L. V., Krausova, V. I., Gavrish, E. Y., Yashina, S. G. & Takeuchi, M. (2002). Okibacterium fritillariae gen. nov., sp. nov., a novel genus of the family Microbacteriaceae. Int J Syst Evol Microbiol 52, 987-993.
7. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
8. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
9. Felsenstein, J. (1993). PHYLIP (phylogeny inference package), version 3.5c. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
10. Fitch, W. M. & Margoliash, E. (1967). Construction of phylogenetic trees: a method based on mutation distances as estimated from cytochrome c sequences is of general applicability. Science 155, 279-284.
11. Gevers, D., Huys, G. & Swings, J. (2001). Applicability of rep-PCR fingerprinting for identification of Lactobacillus species. FEMS Microbiol Lett 205, 31-36.
12. Goris, J., Suzuki, K., De Vos, P., Nakase, T. & Kersters, K. (1998). Evaluation of a microplate DNA-DNA hybridization method compared with the initial renaturation method. Can J Microbiol 44, 1148-1153.
13. Groth, I., Schumann, P., Weiss, N., Martin, K. & Rainey, F. A. (1996). Agrococcus jenensis gen. nov., sp. nov., a new genus of actinomycetes with diaminobutyric acid in the cell wall. Int J Syst Bacteriol 46, 234-239.
14. Irlinger, F., Bimet, F., Delettre, J., Lefevre, M. & Grimont, P. A. D. (2005). Arthrobacter bergerei sp. nov. and Arthrobacter arilaitensis sp. nov., novel coryneform species isolated from the surfaces of cheeses. Int J Syst Evol Microbiol 55, 457-462.
15. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
16. Kämpfer, P., Rainey, F. A., Andersson, M. A., Nurmiaho Lassila, E. L., Ulrych, U., Busse, H.-J., Weiss, N., Mikkola, R. & Salkinoja-Salonen, M. (2000). Frigoribacterium faeni gen. nov., sp. nov., a novel psychrophilic genus of the family Microbacteriaceae. Int J Syst Evol Microbiol 50, 355-363.
17. Kim, S. B., Falconer, C., Williams, E. & Goodfellow, M. (1998). Streptomyces thermocarboxydovorans sp. nov. and Streptomyces thermocarboxydus sp. nov., two moderately thermophilic carboxydotrophic species from soil. Int J Syst Bacteriol 48, 59-68.
18. Klatte, S., Rainey, F. A. & Kroppenstedt, R. M. (1994). Transfer of Rhodococcus aichiensis Tsukamura 1982 and Nocardia amarae Lechevalier and Lechevalier 1974 to the genus Gordona as Gordona aichiensis comb. nov. and Gordona amarae comb. nov. Int J Syst Bacteriol 44, 769-773.
19. Kluge, A. G. & Farris, F. S. (1969). Quantitative phyletics and the evolution of anurans. Syst Zool 18, 1-32.
20. Kroppenstedt, R. M. (1985). Fatty acid and menaquinone analysis of actinomycetes and related organisms. In Chemical Methods in Bacterial Systematics (Society for Applied Bacteriology Technical Series vol. 20), pp. 173-199. Edited by M. Goodfellow & D. E. Minnikin. New York: Academic Press.
21. Lee, S. D. (2007). Labedella givakjiensis gen. nov., sp. nov., a novel actinomycete of the family Microbacteriaceae. Int J Syst Evol Microbiol 57, 2498-2502.
22. MacKenzie, S. L. (1987). Gas chromatographic analysis of amino acids as the N-heptafluorobutyryl isobutyl esters. J Assoc Off Anal Chem 70, 151-160.
23. Manaia, C. M., Nogales, B., Weiss, N. & Nunes, O. C. (2004). Glucosibacter molinativorax gen. nov., sp. nov., a molinate-degrading bacterium and classification of Brevibacterium helvolum DSM 20419 as Pseudoclavibacter helvolus gen. nov., sp. nov. Int J Syst Evol Microbiol 54, 783-789.
24. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
25. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
26. Park, Y.-H., Suzuki, K., Yim, D.-G., Lee, K.-C., Kim, E., Yoon, J., Kim, S., Kho, Y.-H., Goodfellow, M. & Komagata, K. (1993). Suprageneric classification of peptidoglycan group B actinomycetes by nucleotide sequencing of 5S ribosomal RNA. Antonie van Leeuwenhoek 64, 307-313.
27. Pitcher, D. G., Saunders, N. A. & Owen, R. J. (1989). Rapid extraction of bacterial genomic DNA with guanidium thiocyanate. Lett Appl Microbiol 8, 151-156.
28. Pot B., Vandamme, P. & Kersters, K. (1994). Analysis of electrophoretic whole-organism protein fingerprints. In Chemical Methods in Prokaryotic Systematics, pp. 493-521. Edited by M. Goodfellow & A. G. O'Donnell. Chichester: Wiley.
29. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
30. Sambrook, J. & Russell, D. W. (2001). Molecular Cloning: a Laboratory Manual, 3rd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
31. Schleifer, K. H. (1985). Analysis of the chemical composition and primary structure of murein. Methods Microbiol 18, 123-156.
32. Sheridan, P. P., Loveland-Curtze, J., Miteva, V. I. & Brenchley, J. E. (2003). Rhodoglobus vestalii gen. nov., sp. nov., a novel psychrophilic organism isolated from an Antarctic Dry Valley lake. Int J Syst Evol Microbiol 53, 985-994.
33. Stackebrandt, E., Rainey, F. A. & Ward-Rainey, N. L. (1997). Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 47, 479-491.
34. Takeuchi, M. & Hatano, K. (1998). Union of the genera Microbacterium Orla-Jensen and Aureobacterium Collins et al. in a redefined genus Microbacterium. Int J Syst Bacteriol 48, 739-747.
35. Tiago, I., Pires, C., Mendes, V., Morais, P. V., Da Costa, M. & Verissimo, A. (2005). Microcella putealis gen. nov., sp. nov., a Grampositive alkaliphilic bacterium isolated from a nonsaline alkaline groundwater. Syst Appl Microbiol 28, 479-487.
36. Tsukamoto, T., Takeuchi, M., Shida, O., Murata, H. & Shirata, A. (2001). Proposal of Mycetocola gen. nov. in the family Microbacteriaceae and three new species, Mycetocola saprophilus sp. nov., Mycetocola tolaasinivorans sp. nov. and Mycetocola lacteus sp. nov., isolated from cultivated mushroom, Pleurotus ostreatus. Int J Syst Evol Microbiol 51, 937-944.
37. Uchida, K., Kudo, T., Suzuki, K. & Nakase, T. (1999). A new rapid method of glycolate test by diethyl ether extraction, which is applicable to a small amount of bacterial cells of less than one milligram. J Gen Appl Microbiol 45, 49-56.
38. Valdes-Stauber, N., Scherer, S. & Seiler, H. (1997). Identification of yeasts and coryneform bacteria from the surface microflora of brick cheeses. Int J Food Microbiol 34, 115-129.
39. Versalovic, J., Schneider, M., de Bruijn, F. J. & Lupski, J. R. (1994). Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction. Methods Mol Cell Biol 5, 25-40.
40. Zhang, L., Xu, Z. & Patel, B. K. C. (2007). Frondicola australicus gen. nov., sp. nov., isolated from decaying leaf litter from a pine forest. Int J Syst Evol Microbiol 57, 1177-1182.