-
1
-
-
3142768347
-
Chromatin regulates origin activity in Drosophila follicle cells
-
Aggarwal, B., and B. Calvi, 2004 Chromatin regulates origin activity in Drosophila follicle cells. Nature 430: 372-376.
-
(2004)
Nature
, vol.430
, pp. 372-376
-
-
Aggarwal, B.1
Calvi, B.2
-
2
-
-
22544470259
-
Disruption of mechanisms that prevent rereplication triggers a DNA damage response
-
Archambault, V., A. Ikui, B. Drapkin, and F. Cross, 2005 Disruption of mechanisms that prevent rereplication triggers a DNA damage response. Mol. Cell. Biol. 25: 6707-6721.
-
(2005)
Mol. Cell. Biol
, vol.25
, pp. 6707-6721
-
-
Archambault, V.1
Ikui, A.2
Drapkin, B.3
Cross, F.4
-
3
-
-
77649276054
-
Histone H3 Thr 45 phosphorylation is a replicationassociated post-translational modification in S. cerevisiae
-
Baker, S. P., J. Phillips, S. Anderson, Q. Qiu, J. Shabanowitz et al., 2010 Histone H3 Thr 45 phosphorylation is a replicationassociated post-translational modification in S. cerevisiae. Nat. Cell Biol. 12: 294-298.
-
(2010)
Nat. Cell Biol
, vol.12
, pp. 294-298
-
-
Baker, S.P.1
Phillips, J.2
Anderson, S.3
Qiu, Q.4
Shabanowitz, J.5
-
4
-
-
84857187167
-
PR-Set7 and H4K20me1: At the crossroads of genome integrity, cell cycle, chromosome condensation, and transcription
-
Beck, D. B., H. Oda, S. S. Shen, and D. Reinberg, 2012 PR-Set7 and H4K20me1: at the crossroads of genome integrity, cell cycle, chromosome condensation, and transcription. Genes Dev. 26: 325-337.
-
(2012)
Genes Dev
, vol.26
, pp. 325-337
-
-
Beck, D.B.1
Oda, H.2
Shen, S.S.3
Reinberg, D.4
-
5
-
-
0035997368
-
DNA replication in eukaryotic cells
-
Bell, S., and A. Dutta, 2002 DNA replication in eukaryotic cells. Annu. Rev. Biochem. 71: 333-374.
-
(2002)
Annu. Rev. Biochem
, vol.71
, pp. 333-374
-
-
Bell, S.1
Dutta, A.2
-
6
-
-
78049415820
-
Diversity of eukaryotic DNA replication origins revealed by genome-wide analysis of chromatin structure
-
Berbenetz, N. M., C. Nislow, and G. W. Brown, 2010 Diversity of eukaryotic DNA replication origins revealed by genome-wide analysis of chromatin structure. PLoS Genet. 6: pii: e1001092.
-
(2010)
PLoS Genet
, vol.6
-
-
Berbenetz, N.M.1
Nislow, C.2
Brown, G.W.3
-
7
-
-
79960621198
-
Sgf29 binds histone H3K4me2/3 and is required for SAGA complex recruitment and histone H3 acetylation
-
Bian, C., C. Xu, J. Ruan, K. K. Lee, T. L. Burke et al., 2011 Sgf29 binds histone H3K4me2/3 and is required for SAGA complex recruitment and histone H3 acetylation. EMBO J. 30: 2829-2842.
-
(2011)
EMBO J
, vol.30
, pp. 2829-2842
-
-
Bian, C.1
Xu, C.2
Ruan, J.3
Lee, K.K.4
Burke, T.L.5
-
8
-
-
33749354043
-
Opposing roles for Set2 and yFACT in regulating TBP binding at promoters
-
Biswas, D., R. Dutta-Biswas, D. Mitra, Y. Shibata, B. Strahl et al., 2006 Opposing roles for Set2 and yFACT in regulating TBP binding at promoters. EMBO J. 25: 4479-4489.
-
(2006)
EMBO J
, vol.25
, pp. 4479-4489
-
-
Biswas, D.1
Dutta-Biswas, R.2
Mitra, D.3
Shibata, Y.4
Strahl, B.5
-
9
-
-
79961170861
-
How dormant origins promote complete genome replication
-
Blow, J. J., X. Q. Ge, and D. A. Jackson, 2011 How dormant origins promote complete genome replication. Trends Biochem. Sci. 36: 405-414.
-
(2011)
Trends Biochem. Sci
, vol.36
, pp. 405-414
-
-
Blow, J.J.1
Ge, X.Q.2
Jackson, D.A.3
-
10
-
-
0032579440
-
Designer deletion strains derived from Saccharomyces cerevisiae S288C: A useful set of strains and plasmids for PCRmediated gene disruption and other applications
-
Brachmann, C. B., A. Davies, G. J. Cost, E. Caputo, J. Li et al., 1998 Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCRmediated gene disruption and other applications. Yeast 14: 115-132.
-
(1998)
Yeast
, vol.14
, pp. 115-132
-
-
Brachmann, C.B.1
Davies, A.2
Cost, G.J.3
Caputo, E.4
Li, J.5
-
11
-
-
0035805606
-
Replication factors MCM2 and ORC1 interact with the histone acetyltransferase HBO1
-
Burke, T., J. Cook, M. Asano, and J. Nevins, 2001 Replication factors MCM2 and ORC1 interact with the histone acetyltransferase HBO1. J. Biol. Chem. 276: 15397-15408.
-
(2001)
J. Biol. Chem
, vol.276
, pp. 15397-15408
-
-
Burke, T.1
Cook, J.2
Asano, M.3
Nevins, J.4
-
12
-
-
77953400995
-
Histone H2B C-terminal helix mediates trans-histone H3K4 methylation independent of H2B ubiquitination
-
Chandrasekharan, M. B., F. Huang, Y.-C. Chen, and Z.-W. Sun, 2010 Histone H2B C-terminal helix mediates trans-histone H3K4 methylation independent of H2B ubiquitination. Mol. Cell. Biol. 30: 3216-3232.
-
(2010)
Mol. Cell. Biol
, vol.30
, pp. 3216-3232
-
-
Chandrasekharan, M.B.1
Huang, F.2
Chen, Y.-C.3
Sun, Z.-W.4
-
13
-
-
75649111192
-
The genetic landscape of a cell
-
Costanzo, M., A. Baryshnikova, J. Bellay, Y. Kim, E. D. Spear et al., 2010 The genetic landscape of a cell. Science 327: 425-431.
-
(2010)
Science
, vol.327
, pp. 425-431
-
-
Costanzo, M.1
Baryshnikova, A.2
Bellay, J.3
Kim, Y.4
Spear, E.D.5
-
14
-
-
43049124410
-
An ARS element inhibits DNA replication through a SIR2-dependent mechanism
-
Crampton, A., F. Chang, D. Pappas, R. Frisch, and M. Weinreich, 2008 An ARS element inhibits DNA replication through a SIR2-dependent mechanism. Mol. Cell 30: 156-166.
-
(2008)
Mol. Cell
, vol.30
, pp. 156-166
-
-
Crampton, A.1
Chang, F.2
Pappas, D.3
Frisch, R.4
Weinreich, M.5
-
15
-
-
34347346075
-
Linear derivatives of Saccharomyces cerevisiae chromosome III can be maintained in the absence of autonomously replicating sequence elements
-
Dershowitz, A., M. Snyder, M. Sbia, J. H. Skurnick, L. Y. Ong et al., 2007 Linear derivatives of Saccharomyces cerevisiae chromosome III can be maintained in the absence of autonomously replicating sequence elements. Mol. Cell. Biol. 27: 4652-4663.
-
(2007)
Mol. Cell. Biol
, vol.27
, pp. 4652-4663
-
-
Dershowitz, A.1
Snyder, M.2
Sbia, M.3
Skurnick, J.H.4
Ong, L.Y.5
-
16
-
-
77950962157
-
Conserved nucleosome positioning defines replication origins
-
Eaton, M. L., K. Galani, S. Kang, S. P. Bell, and D. M. Macalpine, 2010 Conserved nucleosome positioning defines replication origins. Genes Dev. 24: 748-753.
-
(2010)
Genes Dev
, vol.24
, pp. 748-753
-
-
Eaton, M.L.1
Galani, K.2
Kang, S.3
Bell, S.P.4
Macalpine, D.M.5
-
17
-
-
77952520644
-
GCN5 is a positive regulator of origins of DNA replication in Saccharomyces cerevisiae
-
Espinosa, M. C., M. A. Rehman, P. Chisamore-Robert, D. Jeffery, and K. Yankulov, 2010 GCN5 is a positive regulator of origins of DNA replication in Saccharomyces cerevisiae. PLoS ONE 5: e8964.
-
(2010)
PLoS ONE
, vol.5
-
-
Espinosa, M.C.1
Rehman, M.A.2
Chisamore-Robert, P.3
Jeffery, D.4
Yankulov, K.5
-
18
-
-
0033853131
-
Loss control of Mcm5 interaction with chromatin in cdc6-1 mutated in CDCNTP motif
-
Feng, L., Y. Hu, B. Wang, L. Wu, and A. Jong, 2000 Loss control of Mcm5 interaction with chromatin in cdc6-1 mutated in CDCNTP motif. DNA Cell Biol. 19: 447-457.
-
(2000)
DNA Cell Biol
, vol.19
, pp. 447-457
-
-
Feng, L.1
Hu, Y.2
Wang, B.3
Wu, L.4
Jong, A.5
-
19
-
-
79251551440
-
Identification of lysine 37 of histone H2B as a novel site of methylation
-
Gardner, K. E., L. Zhou, M. A. Parra, X. Chen, and B. D. Strahl, 2011 Identification of lysine 37 of histone H2B as a novel site of methylation. PLoS ONE 6: e16244.
-
(2011)
PLoS ONE
, vol.6
-
-
Gardner, K.E.1
Zhou, L.2
Parra, M.A.3
Chen, X.4
Strahl, B.D.5
-
20
-
-
37249025795
-
Dormant origins licensed by excess Mcm2 7 are required for human cells to survive replicative stress
-
Ge, X., D. Jackson, and J. Blow, 2007 Dormant origins licensed by excess Mcm2 7 are required for human cells to survive replicative stress. Genes Dev. 21: 3331-3341.
-
(2007)
Genes Dev
, vol.21
, pp. 3331-3341
-
-
Ge, X.1
Jackson, D.2
Blow, J.3
-
21
-
-
0024266139
-
New yeast-Escherichia coli shuttle vectors constructed with in vitro mutagenized yeast genes lacking six-base pair restriction sites
-
Gietz, R. D., and A. Sugino, 1988 New yeast-Escherichia coli shuttle vectors constructed with in vitro mutagenized yeast genes lacking six-base pair restriction sites. Gene 74: 527-534.
-
(1988)
Gene
, vol.74
, pp. 527-534
-
-
Gietz, R.D.1
Sugino, A.2
-
22
-
-
44149084708
-
DNA replication timing of the human beta-globin domain is controlled by histone modification at the origin
-
Goren, A., A. Tabib, M. Hecht, and H. Cedar, 2008 DNA replication timing of the human beta-globin domain is controlled by histone modification at the origin. Genes Dev. 22: 1319-1324.
-
(2008)
Genes Dev
, vol.22
, pp. 1319-1324
-
-
Goren, A.1
Tabib, A.2
Hecht, M.3
Cedar, H.4
-
23
-
-
0033605238
-
Expanded lysine acetylation specificity of Gcn5 in native complexes
-
Grant, P., A. Eberharter, S. John, R. Cook, B. Turner et al., 1999 Expanded lysine acetylation specificity of Gcn5 in native complexes. J. Biol. Chem. 274: 5895-5900.
-
(1999)
J. Biol. Chem
, vol.274
, pp. 5895-5900
-
-
Grant, P.1
Eberharter, A.2
John, S.3
Cook, R.4
Turner, B.5
-
24
-
-
79953760389
-
H3 lysine 4 is acetylated at active gene promoters and is regulated by h3 lysine 4 methylation
-
Guillemette, B., P. Drogaris, H.-H. S. Lin, H. Armstrong, K. Hiragami-Hamada et al., 2011 H3 lysine 4 is acetylated at active gene promoters and is regulated by h3 lysine 4 methylation. PLoS Genet. 7: e1001354.
-
(2011)
PLoS Genet
, vol.7
-
-
Guillemette, B.1
Drogaris, P.2
Lin H.-H., S.3
Armstrong, H.4
Hiragami-Hamada, K.5
-
25
-
-
65449142884
-
Replicationtiming and transcriptional control: Beyond cause and effect: Part II
-
Hiratani, I., S. Takebayashi, J. Lu, and D. Gilbert, 2009 Replicationtiming and transcriptional control: beyond cause and effect: part II. Curr. Opin. Genet. Dev. 19: 142-149.
-
(2009)
Curr. Opin. Genet. Dev
, vol.19
, pp. 142-149
-
-
Hiratani, I.1
Takebayashi, S.2
Lu, J.3
Gilbert, D.4
-
26
-
-
0028943705
-
A new class of histone H2A mutations in Saccharomyces cerevisiae causes specific transcriptional defects in vivo
-
Hirschhorn, J. N., A. L. Bortvin, S. L. Ricupero-Hovasse, and F. Winston, 1995 A new class of histone H2A mutations in Saccharomyces cerevisiae causes specific transcriptional defects in vivo. Mol. Cell. Biol. 15: 1999-2009.
-
(1995)
Mol. Cell. Biol
, vol.15
, pp. 1999-2009
-
-
Hirschhorn, J.N.1
Bortvin, A.L.2
Ricupero-Hovasse, S.L.3
Winston, F.4
-
27
-
-
0026506383
-
Addition of extra origins of replication to a minichromosome suppresses its mitotic loss in cdc6 and cdc14 mutants of Saccharomyces cerevisiae
-
Hogan, E., and D. Koshland, 1992 Addition of extra origins of replication to a minichromosome suppresses its mitotic loss in cdc6 and cdc14 mutants of Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 89: 3098-3102.
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 3098-3102
-
-
Hogan, E.1
Koshland, D.2
-
28
-
-
0033551686
-
Histone acetyltransferase HBO1 interacts with the ORC1 subunit of the human initiator protein
-
Iizuka, M., and B. Stillman, 1999 Histone acetyltransferase HBO1 interacts with the ORC1 subunit of the human initiator protein. J. Biol. Chem. 274: 23027-23034.
-
(1999)
J. Biol. Chem
, vol.274
, pp. 23027-23034
-
-
Iizuka, M.1
Stillman, B.2
-
29
-
-
31344462362
-
Regulation of replication licensing by acetyltransferase Hbo1
-
Iizuka, M., T. Matsui, H. Takisawa, and M. Smith, 2006 Regulation of replication licensing by acetyltransferase Hbo1. Mol. Cell. Biol. 26: 1098-1108.
-
(2006)
Mol. Cell. Biol
, vol.26
, pp. 1098-1108
-
-
Iizuka, M.1
Matsui, T.2
Takisawa, H.3
Smith, M.4
-
30
-
-
65449160972
-
Genomewide replication profiles indicate an expansive role for Rpd3L in regulating replication initiation timing or efficiency, and reveal genomic loci of Rpd3 function in Saccharomyces cerevisiae
-
Knott, S., C. Viggiani, S. Tavare, and O. Aparicio, 2009 Genomewide replication profiles indicate an expansive role for Rpd3L in regulating replication initiation timing or efficiency, and reveal genomic loci of Rpd3 function in Saccharomyces cerevisiae. Genes Dev. 23: 1077-1090.
-
(2009)
Genes Dev
, vol.23
, pp. 1077-1090
-
-
Knott, S.1
Viggiani, C.2
Tavare, S.3
Aparicio, O.4
-
31
-
-
33847076849
-
Chromatin modifications and their function
-
Kouzarides, T., 2007 Chromatin modifications and their function. Cell 128: 693-705.
-
(2007)
Cell
, vol.128
, pp. 693-705
-
-
Kouzarides, T.1
-
32
-
-
84862818911
-
The BAH domain of ORC1 links H4K20me2 to DNA replication licensing and Meier-Gorlin syndrome
-
Kuo, A. J., J. Song, P. Cheung, S. Ishibe-Murakami, S. Yamazoe et al., 2012 The BAH domain of ORC1 links H4K20me2 to DNA replication licensing and Meier-Gorlin syndrome. Nature 484: 115-119.
-
(2012)
Nature
, vol.484
, pp. 115-119
-
-
Kuo, A.J.1
Song, J.2
Cheung, P.3
Ishibe-Murakami, S.4
Yamazoe, S.5
-
33
-
-
77953954908
-
How do Cdc7 and cyclin-dependent kinases trigger the initiation of chromosome replication in eukaryotic cells?
-
Labib, K., 2010 How do Cdc7 and cyclin-dependent kinases trigger the initiation of chromosome replication in eukaryotic cells? Genes Dev. 24: 1208-1219.
-
(2010)
Genes Dev
, vol.24
, pp. 1208-1219
-
-
Labib, K.1
-
34
-
-
36849046285
-
Histone crosstalk between H2B monoubiquitination and H3 methylation mediated by COMPASS
-
Lee, J., A. Shukla, J. Schneider, S. Swanson, M. Washburn et al., 2007 Histone crosstalk between H2B monoubiquitination and H3 methylation mediated by COMPASS. Cell 131: 1084-1096.
-
(2007)
Cell
, vol.131
, pp. 1084-1096
-
-
Lee, J.1
Shukla, A.2
Schneider, J.3
Swanson, S.4
Washburn, M.5
-
35
-
-
79955949044
-
The specificity and topology of chromatin interaction pathways in yeast
-
Lenstra, T. L., J. J. Benschop, T. Kim, J. M. Schulze, N. A. C. H. Brabers et al., 2011 The specificity and topology of chromatin interaction pathways in yeast. Mol. Cell 42: 536-549.
-
(2011)
Mol. Cell
, vol.42
, pp. 536-549
-
-
Lenstra, T.L.1
Benschop, J.J.2
Kim, T.3
Schulze, J.M.4
Brabers, N.A.C.H.5
-
36
-
-
0021342031
-
Mutants of S. cerevisiae defective in the maintenance of minichromosomes
-
Maine, G., P. Sinha, and B. Tye, 1984 Mutants of S. cerevisiae defective in the maintenance of minichromosomes. Genetics 106: 365-385.
-
(1984)
Genetics
, vol.106
, pp. 365-385
-
-
Maine, G.1
Sinha, P.2
Tye, B.3
-
37
-
-
33750328340
-
The Yng1p plant homeodomain finger is a methylhistone binding module that recognizes lysine 4-methylated histone H3
-
Martin, D., K. Baetz, X. Shi, K. Walter, V. MacDonald et al., 2006a The Yng1p plant homeodomain finger is a methylhistone binding module that recognizes lysine 4-methylated histone H3. Mol. Cell. Biol. 26: 7871-7879.
-
(2006)
Mol. Cell. Biol
, vol.26
, pp. 7871-7879
-
-
Martin, D.1
Baetz, K.2
Shi, X.3
Walter, K.4
Macdonald, V.5
-
38
-
-
33645804789
-
Methylation of histone H3 mediates the association of the NuA3 histone acetyltransferase with chromatin
-
Martin, D., D. Grimes, K. Baetz, and L. Howe, 2006b Methylation of histone H3 mediates the association of the NuA3 histone acetyltransferase with chromatin. Mol. Cell. Biol. 26: 3018-3028.
-
(2006)
Mol. Cell. Biol
, vol.26
, pp. 3018-3028
-
-
Martin, D.1
Grimes, D.2
Baetz, K.3
Howe, L.4
-
39
-
-
0028967493
-
Characterization of novel yeast RAD6 (UBC2) ubiquitin-conjugating enzyme mutants constructed by charge-to-alanine scanning mutagenesis
-
McDonough, M., P. Sangan, and D. K. Gonda, 1995 Characterization of novel yeast RAD6 (UBC2) ubiquitin-conjugating enzyme mutants constructed by charge-to-alanine scanning mutagenesis. J. Bacteriol. 177: 580-585.
-
(1995)
J. Bacteriol
, vol.177
, pp. 580-585
-
-
McDonough, M.1
Sangan, P.2
Gonda, D.K.3
-
40
-
-
77957168933
-
Eukaryotic DNA replication origins: Many choices for appropriate answers
-
Méchali, M., 2010 Eukaryotic DNA replication origins: many choices for appropriate answers. Nat. Rev. Mol. Cell Biol. 11: 728-738.
-
(2010)
Nat. Rev. Mol. Cell Biol
, vol.11
, pp. 728-738
-
-
Méchali, M.1
-
41
-
-
84856068282
-
Charge-based interaction conserved within the histone H3 lysine 4 (H3K4) methyltransferase complexes is needed for protein stability, histone methylation, and gene expression
-
Mersman, D. P., H.-N. Du, I. M. Fingerman, P. F. South, and S. D. Briggs, 2012 Charge-based interaction conserved within the histone H3 lysine 4 (H3K4) methyltransferase complexes is needed for protein stability, histone methylation, and gene expression. J. Biol. Chem. 287: 2652-2665.
-
(2012)
J. Biol. Chem
, vol.287
, pp. 2652-2665
-
-
Mersman, D.P.1
Du, H.-N.2
Fingerman, I.M.3
South, P.F.4
Briggs, S.D.5
-
42
-
-
73649089696
-
HBO1 histone acetylase activity is essential for DNA replication licensing and inhibited by Geminin
-
Miotto, B., and K. Struhl, 2010 HBO1 histone acetylase activity is essential for DNA replication licensing and inhibited by Geminin. Mol. Cell 37: 57-66.
-
(2010)
Mol. Cell
, vol.37
, pp. 57-66
-
-
Miotto, B.1
Struhl, K.2
-
43
-
-
77954526472
-
The conserved bromo-adjacent homology domain of yeast Orc1 functions in the selection of DNA replication origins within chromatin
-
Müller, P., S. Park, E. Shor, D. J. Huebert, C. L. Warren et al., 2010 The conserved bromo-adjacent homology domain of yeast Orc1 functions in the selection of DNA replication origins within chromatin. Genes Dev. 24: 1418-1433.
-
(2010)
Genes Dev
, vol.24
, pp. 1418-1433
-
-
Müller, P.1
Park, S.2
Shor, E.3
Huebert, D.J.4
Warren, C.L.5
-
44
-
-
34247365026
-
The role of histone ubiquitylation and deubiquitylation in gene expression as determined by the analysis of an HTB1 (K123R) Saccharomyces cerevisiae strain
-
Mutiu, A. I., S. M. T. Hoke, J. Genereaux, G. Liang, and C. J. Brandl, 2007 The role of histone ubiquitylation and deubiquitylation in gene expression as determined by the analysis of an HTB1 (K123R) Saccharomyces cerevisiae strain. Mol. Genet. Genomics 277: 491-506.
-
(2007)
Mol. Genet. Genomics
, vol.277
, pp. 491-506
-
-
Mutiu, A.I.1
Hoke, S.M.T.2
Genereaux, J.3
Liang, G.4
Brandl, C.J.5
-
45
-
-
49449118512
-
A comprehensive library of histone mutants identifies nucleosomal residues required for H3K4 methylation
-
Nakanishi, S., B. W. Sanderson, K. M. Delventhal, W. D. Bradford, K. Staehling-Hampton et al., 2008 A comprehensive library of histone mutants identifies nucleosomal residues required for H3K4 methylation. Nat. Struct. Mol. Biol. 15: 881-888.
-
(2008)
Nat. Struct. Mol. Biol
, vol.15
, pp. 881-888
-
-
Nakanishi, S.1
Sanderson, B.W.2
Delventhal, K.M.3
Bradford, W.D.4
Staehling-Hampton, K.5
-
46
-
-
68549090934
-
Histone H2BK123 monoubiquitination is the critical determinant for H3K4 and H3K79 trimethylation by COMPASS and Dot1
-
Nakanishi, S., J. S. Lee, K. E. Gardner, J. M. Gardner, Y.-H. Takahashi et al., 2009 Histone H2BK123 monoubiquitination is the critical determinant for H3K4 and H3K79 trimethylation by COMPASS and Dot1. J. Cell Biol. 186: 371-377.
-
(2009)
J. Cell Biol
, vol.186
, pp. 371-377
-
-
Nakanishi, S.1
Lee, J.S.2
Gardner, K.E.3
Gardner, J.M.4
Takahashi, Y.-H.5
-
47
-
-
78751491475
-
Dynamic interplay between histone H3 modifications and protein interpreters: Emerging evidence for a "histone language."
-
Oliver, S. S., and J. M. Denu, 2010 Dynamic interplay between histone H3 modifications and protein interpreters: emerging evidence for a "histone language." Chembiochem. 12: 299-307.
-
(2010)
Chembiochem
, vol.12
, pp. 299-307
-
-
Oliver, S.S.1
Denu, J.M.2
-
48
-
-
64049105933
-
Acetylation by GCN5 regulates CDC6 phosphorylation in the S phase of the cell cycle
-
Paolinelli, R., R. Mendoza-Maldonado, A. Cereseto, and M. Giacca, 2009 Acetylation by GCN5 regulates CDC6 phosphorylation in the S phase of the cell cycle. Nat. Struct. Mol. Biol. 16: 412-420.
-
(2009)
Nat. Struct. Mol. Biol
, vol.16
, pp. 412-420
-
-
Paolinelli, R.1
Mendoza-Maldonado, R.2
Cereseto, A.3
Giacca, M.4
-
49
-
-
67649550089
-
H3 lysine 4 diand tri-methylation deposited by cryptic transcription attenuates promoter activation
-
Pinskaya, M., S. Gourvennec, and A. Morillon, 2009 H3 lysine 4 diand tri-methylation deposited by cryptic transcription attenuates promoter activation. EMBO J. 28: 1697-1707.
-
(2009)
EMBO J
, vol.28
, pp. 1697-1707
-
-
Pinskaya, M.1
Gourvennec, S.2
Morillon, A.3
-
50
-
-
23944462969
-
Genome-wide map of nucleosome acetylation and methylation in yeast
-
Pokholok, D., C. Harbison, S. Levine, M. Cole, N. Hannett et al., 2005 Genome-wide map of nucleosome acetylation and methylation in yeast. Cell 122: 517-527.
-
(2005)
Cell
, vol.122
, pp. 517-527
-
-
Pokholok, D.1
Harbison, C.2
Levine, S.3
Cole, M.4
Hannett, N.5
-
51
-
-
67651245131
-
H3 k36 methylation helps determine the timing of cdc45 association with replication origins
-
Pryde, F., D. Jain, A. Kerr, R. Curley, F. R. Mariotti et al., 2009 H3 k36 methylation helps determine the timing of cdc45 association with replication origins. PLoS ONE 4: e5882.
-
(2009)
PLoS ONE
, vol.4
-
-
Pryde, F.1
Jain, D.2
Kerr, A.3
Curley, R.4
Mariotti, F.R.5
-
52
-
-
77649217817
-
Replication and active demethylation represent partially overlapping mechanisms for erasure of H3K4me3 in budding yeast
-
Radman-Livaja, M., C. L. Liu, N. Friedman, S. L. Schreiber, and O. J. Rando, 2010 Replication and active demethylation represent partially overlapping mechanisms for erasure of H3K4me3 in budding yeast. PLoS Genet. 6: e1000837.
-
(2010)
PLoS Genet
, vol.6
-
-
Radman-Livaja, M.1
Liu, C.L.2
Friedman, N.3
Schreiber, S.L.4
Rando, O.J.5
-
53
-
-
70349235389
-
Dynamic changes in chromatin structure through posttranslational modifications of histone H3 during replication origin activation
-
Rampakakis, E., D. Di Paola, M. K. Chan, and M. Zannis-Hadjopoulos, 2009 Dynamic changes in chromatin structure through posttranslational modifications of histone H3 during replication origin activation. J. Cell. Biochem. 108: 400-407.
-
(2009)
J. Cell. Biochem
, vol.108
, pp. 400-407
-
-
Rampakakis, E.1
Di Paola, D.2
Chan, M.K.3
Zannis-Hadjopoulos, M.4
-
54
-
-
17144365769
-
Histone trimethylation by Set1 is coordinated by the RRM, autoinhibitory, and catalytic domains
-
Schlichter, A., and B. R. Cairns, 2005 Histone trimethylation by Set1 is coordinated by the RRM, autoinhibitory, and catalytic domains. EMBO J. 24: 1222-1231.
-
(2005)
EMBO J
, vol.24
, pp. 1222-1231
-
-
Schlichter, A.1
Cairns, B.R.2
-
55
-
-
33750845099
-
Quantitative genetic analysis in Saccharomyces cerevisiae using epistatic miniarray profiles (E-MAPs) and its application to chromatin functions
-
Schuldiner, M., S. R. Collins, J. S. Weissman, and N. J. Krogan, 2006 Quantitative genetic analysis in Saccharomyces cerevisiae using epistatic miniarray profiles (E-MAPs) and its application to chromatin functions. Methods 40: 344-352.
-
(2006)
Methods
, vol.40
, pp. 344-352
-
-
Schuldiner, M.1
Collins, S.R.2
Weissman, J.S.3
Krogan, N.J.4
-
56
-
-
61849177618
-
Chromatin state marks cell-type- and gender-specific replication of the Drosophila genome
-
Schwaiger, M., M. B. Stadler, O. Bell, H. Kohler, E. J. Oakeley et al., 2009 Chromatin state marks cell-type- and gender-specific replication of the Drosophila genome. Genes Dev. 23: 589-601.
-
(2009)
Genes Dev
, vol.23
, pp. 589-601
-
-
Schwaiger, M.1
Stadler, M.B.2
Bell, O.3
Kohler, H.4
Oakeley, E.J.5
-
57
-
-
33748065020
-
SAGA binds TBP via its Spt8 subunit in competition with DNA: Implications for TBP recruitment
-
Sermwittayawong, D., and S. Tan, 2006 SAGA binds TBP via its Spt8 subunit in competition with DNA: implications for TBP recruitment. EMBO J. 25: 3791-3800.
-
(2006)
EMBO J
, vol.25
, pp. 3791-3800
-
-
Sermwittayawong, D.1
Tan, S.2
-
58
-
-
34047248383
-
Proteome-wide analysis in Saccharomyces cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36
-
Shi, X., I. Kachirskaia, K. Walter, J. Kuo, A. Lake et al., 2007 Proteome-wide analysis in Saccharomyces cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36. J. Biol. Chem. 282: 2450-2455.
-
(2007)
J. Biol. Chem
, vol.282
, pp. 2450-2455
-
-
Shi, X.1
Kachirskaia, I.2
Walter, K.3
Kuo, J.4
Lake, A.5
-
59
-
-
33745865880
-
Functional analysis of H2B-Lys-123 ubiquitination in regulation of H3-Lys-4 methylation and recruitment of RNA polymerase II at the coding sequences of several active genes in vivo
-
Shukla, A., N. Stanojevic, Z. Duan, T. Shadle, and S. R. Bhaumik, 2006 Functional analysis of H2B-Lys-123 ubiquitination in regulation of H3-Lys-4 methylation and recruitment of RNA polymerase II at the coding sequences of several active genes in vivo. J. Biol. Chem. 281: 19045-19054.
-
(2006)
J. Biol. Chem
, vol.281
, pp. 19045-19054
-
-
Shukla, A.1
Stanojevic, N.2
Duan, Z.3
Shadle, T.4
Bhaumik, S.R.5
-
60
-
-
0025067370
-
Nucleosome positioning can affect the function of a cis-acting DNA element in vivo
-
Simpson, R., 1990 Nucleosome positioning can affect the function of a cis-acting DNA element in vivo. Nature 343: 387-389.
-
(1990)
Nature
, vol.343
, pp. 387-389
-
-
Simpson, R.1
-
61
-
-
29644433964
-
Human but not yeast CHD1 binds directly and selectively to histone H3 methylated at lysine 4 via its tandem chromodomains
-
Sims, R., C. Chen, H. Santos-Rosa, T. Kouzarides, S. Patel et al., 2005 Human but not yeast CHD1 binds directly and selectively to histone H3 methylated at lysine 4 via its tandem chromodomains. J. Biol. Chem. 280: 41789-41792.
-
(2005)
J. Biol. Chem
, vol.280
, pp. 41789-41792
-
-
Sims, R.1
Chen, C.2
Santos-Rosa, H.3
Kouzarides, T.4
Patel, S.5
-
62
-
-
84860848751
-
Yeast Swd2 is essential because of antagonism between Set1 histone methyltransferase complex and APT (associated with Pta1) termination factor
-
Soares, L. M., and S. Buratowski, 2012 Yeast Swd2 is essential because of antagonism between Set1 histone methyltransferase complex and APT (associated with Pta1) termination factor. J. Biol. Chem. 287: 15219-15231.
-
(2012)
J. Biol. Chem
, vol.287
, pp. 15219-15231
-
-
Soares, L.M.1
Buratowski, S.2
-
63
-
-
0034610814
-
The language of covalent histone modifications
-
Strahl, B., and C. Allis, 2000 The language of covalent histone modifications. Nature 403: 41-45.
-
(2000)
Nature
, vol.403
, pp. 41-45
-
-
Strahl, B.1
Allis, C.2
-
64
-
-
37449015999
-
Association with the origin recognition complex suggests a novel role for histone acetyltransferase Hat1p/Hat2p
-
Suter, B., O. Pogoutse, X. Guo, N. Krogan, P. Lewis et al., 2007 Association with the origin recognition complex suggests a novel role for histone acetyltransferase Hat1p/Hat2p. BMC Biol. 5: 38.
-
(2007)
BMC Biol
, vol.5
, pp. 38
-
-
Suter, B.1
Pogoutse, O.2
Guo, X.3
Krogan, N.4
Lewis, P.5
-
65
-
-
0037013301
-
Functions of sensor 1 and sensor 2 regions of Saccharomyces cerevisiae Cdc6p in vivo and in vitro
-
Takahashi, N., S. Tsutsumi, T. Tsuchiya, B. Stillman, and T. Mizushima, 2002 Functions of sensor 1 and sensor 2 regions of Saccharomyces cerevisiae Cdc6p in vivo and in vitro. J. Biol. Chem. 277: 16033-16040.
-
(2002)
J. Biol. Chem
, vol.277
, pp. 16033-16040
-
-
Takahashi, N.1
Tsutsumi, S.2
Tsuchiya, T.3
Stillman, B.4
Mizushima, T.5
-
66
-
-
77955291294
-
Structural basis for H3K4 trimethylation by yeast Set1/COMPASS
-
Takahashi, Y.-H., and A. Shilatifard, 2010 Structural basis for H3K4 trimethylation by yeast Set1/COMPASS. Adv. Enzyme Regul. 50: 104-110.
-
(2010)
Adv. Enzyme Regul
, vol.50
, pp. 104-110
-
-
Takahashi, Y.-H.1
Shilatifard, A.2
-
67
-
-
67650091137
-
Regulation of H3K4 Trimethylation via Cps40 (Spp1) of COMPASS is monoubiquitination independent: Implication for a Phe/Tyr switch by the catalytic domain of Set1
-
Takahashi, Y., J. Lee, S. Swanson, A. Saraf, L. Florens et al., 2009 Regulation of H3K4 Trimethylation via Cps40 (Spp1) of COMPASS is monoubiquitination independent: implication for a Phe/Tyr switch by the catalytic domain of Set1. Mol. Cell. Biol. 29: 3478-3486.
-
(2009)
Mol. Cell. Biol
, vol.29
, pp. 3478-3486
-
-
Takahashi, Y.1
Lee, J.2
Swanson, S.3
Saraf, A.4
Florens, L.5
-
68
-
-
84855488676
-
Structural analysis of the core COMPASS family of histone H3K4 methylases from yeast to human
-
Takahashi, Y.-H., G. H. Westfield, A. N. Oleskie, R. C. Trievel, A. Shilatifard et al., 2011 Structural analysis of the core COMPASS family of histone H3K4 methylases from yeast to human. Proc. Natl. Acad. Sci. USA 108: 20526-20531.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 20526-20531
-
-
Takahashi, Y.-H.1
Westfield, G.H.2
Oleskie, A.N.3
Trievel, R.C.4
Shilatifard, A.5
-
69
-
-
38049025837
-
PRSet7-dependent lysine methylation ensures genome replication and stability through S phase
-
Tardat, M., R. Murr, Z. Herceg, C. Sardet, and E. Julien, 2007 PRSet7-dependent lysine methylation ensures genome replication and stability through S phase. J. Cell Biol. 179: 1413-1426.
-
(2007)
J. Cell Biol
, vol.179
, pp. 1413-1426
-
-
Tardat, M.1
Murr, R.2
Herceg, Z.3
Sardet, C.4
Julien, E.5
-
70
-
-
78149281634
-
The histone H4 Lys 20 methyltransferase PR-Set7 regulates replication origins in mammalian cells
-
Tardat, M., J. Brustel, O. Kirsh, C. Lefevbre, M. Callanan et al., 2010 The histone H4 Lys 20 methyltransferase PR-Set7 regulates replication origins in mammalian cells. Nat. Cell Biol. 12: 1086-1093.
-
(2010)
Nat. Cell Biol
, vol.12
, pp. 1086-1093
-
-
Tardat, M.1
Brustel, J.2
Kirsh, O.3
Lefevbre, C.4
Callanan, M.5
-
71
-
-
33751527233
-
Yng1 PHD finger binding to H3 trimethylated at K4 promotes NuA3 HAT activity at K14 of H3 and transcription at a subset of targeted ORFs
-
Taverna, S., S. Ilin, R. Rogers, J. Tanny, H. Lavender et al., 2006 Yng1 PHD finger binding to H3 trimethylated at K4 promotes NuA3 HAT activity at K14 of H3 and transcription at a subset of targeted ORFs. Mol. Cell 24: 785-796.
-
(2006)
Mol. Cell
, vol.24
, pp. 785-796
-
-
Taverna, S.1
Ilin, S.2
Rogers, R.3
Tanny, J.4
Lavender, H.5
-
72
-
-
0034595211
-
DNA synthesis at individual replication forks requires the essential initiation factor Cdc45p
-
Tercero, J., K. Labib, and J. Diffley, 2000 DNA synthesis at individual replication forks requires the essential initiation factor Cdc45p. EMBO J. 19: 2082-2093.
-
(2000)
EMBO J
, vol.19
, pp. 2082-2093
-
-
Tercero, J.1
Labib, K.2
Diffley, J.3
-
73
-
-
33644807842
-
Synthetic genetic array analysis in Saccharomyces cerevisiae
-
Tong, A. H. Y., and C. Boone, 2006 Synthetic genetic array analysis in Saccharomyces cerevisiae. Methods Mol. Biol. 313: 171-192.
-
(2006)
Methods Mol. Biol
, vol.313
, pp. 171-192
-
-
Tong, A.H.Y.1
Boone, C.2
-
74
-
-
0032845169
-
Minichromosome maintenance as a genetic assay for defects in DNA replication
-
Tye, B. K., 1999 Minichromosome maintenance as a genetic assay for defects in DNA replication. Methods 18: 329-334.
-
(1999)
Methods
, vol.18
, pp. 329-334
-
-
Tye, B.K.1
-
75
-
-
77950519650
-
Dynamic changes in histone acetylation regulate origins of DNA replication
-
Unnikrishnan, A., P. R. Gafken, and T. Tsukiyama, 2010 Dynamic changes in histone acetylation regulate origins of DNA replication. Nat. Struct. Mol. Biol. 17: 430-437.
-
(2010)
Nat. Struct. Mol. Biol
, vol.17
, pp. 430-437
-
-
Unnikrishnan, A.1
Gafken, P.R.2
Tsukiyama, T.3
-
76
-
-
0036863542
-
Histone acetylation regulates the time of replication origin firing
-
Vogelauer, M., L. Rubbi, I. Lucas, B. Brewer, and M. Grunstein, 2002 Histone acetylation regulates the time of replication origin firing. Mol. Cell 10: 1223-1233.
-
(2002)
Mol. Cell
, vol.10
, pp. 1223-1233
-
-
Vogelauer, M.1
Rubbi, L.2
Lucas, I.3
Brewer, B.4
Grunstein, M.5
-
77
-
-
1542268353
-
The activities of eukaryotic replication origins in chromatin
-
Weinreich, M., M. Palacios DeBeer, and C. Fox, 2004 The activities of eukaryotic replication origins in chromatin. Biochim. Biophys. Acta 1677: 142-157.
-
(2004)
Biochim. Biophys. Acta
, vol.1677
, pp. 142-157
-
-
Weinreich, M.1
de Beer, M.P.2
Fox, C.3
-
78
-
-
78650840362
-
A new regulator of the cell cycle: The PR-Set7 histone methyltransferase
-
Wu, S., and J. C. Rice, 2011 A new regulator of the cell cycle: the PR-Set7 histone methyltransferase. Cell Cycle 10: 68-72.
-
(2011)
Cell Cycle
, vol.10
, pp. 68-72
-
-
Wu, S.1
Rice, J.C.2
-
79
-
-
84862777220
-
Histone H3 lysine 56 methylation regulates DNA replication through its interaction with PCNA
-
Yu, Y., C. Song, Q. Zhang, P. A. DiMaggio, B. A. Garcia et al., 2012 Histone H3 lysine 56 methylation regulates DNA replication through its interaction with PCNA. Mol Cell. 46: 7-17.
-
(2012)
Mol Cell
, vol.46
, pp. 7-17
-
-
Yu, Y.1
Song, C.2
Zhang, Q.3
Dimaggio, P.A.4
Garcia, B.A.5
|