Functional analysis of H2B-Lys-123 ubiquitination in regulation of H3-Lys-4 methylation and recruitment of RNA polymerase II at the coding sequences of several active genes in vivo

Journal of Biological Chemistry

Volumn 281, Issue 28, 2006, Pages 19045-19054

  Shukla, Abhijit ^a   Stanojevic, Nadia ^a   Duan, Zhen ^a   Shadle, Thomas ^a   Bhaumik, Sukesh R ^a  

^a SOUTHERN ILLINOIS UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOASSAY; CHEMICAL MODIFICATION; ENZYME KINETICS; FORMALDEHYDE; GENETIC ENGINEERING; IMMUNOLOGY; PRECIPITATION (CHEMICAL);

DIMETHYLATION; METHYLATION; MONOMETHYLATION; TRIMETHYLATION;

RNA;

FORMALDEHYDE; HISTONE H2B; HISTONE H3; LYSINE; RNA POLYMERASE II; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR ADH1; TRANSCRIPTION FACTOR PHO84; TRANSCRIPTION FACTOR PYK1; UNCLASSIFIED DRUG;

ACETYLATION; AMINO ACID ANALYSIS; ARTICLE; CHROMATIN IMMUNOPRECIPITATION; CONTROLLED STUDY; COVALENT BOND; CROSS LINKING; GALACTOSE INDUCIBLE GENE; GENE; GENE SEQUENCE; GENETIC CODE; GENETIC TRANSCRIPTION; IN VIVO STUDY; NONHUMAN; PRIORITY JOURNAL; PROTEIN METHYLATION; PROTEIN MODIFICATION; UBIQUITINATION; UPREGULATION;

CHROMATIN IMMUNOPRECIPITATION; DNA PRIMERS; HISTONES; LYSINE; METHYLATION; MODELS, GENETIC; OPEN READING FRAMES; PLASMIDS; RNA POLYMERASE II; SACCHAROMYCES CEREVISIAE; UBIQUITIN;

EID: 33745865880     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M513533200     Document Type: Article

References (63)

1. Luger, K., Mader, A. W., Richmond, R. K., Sargent, D. F., and Richmond, T. J. (1997) Nature 389, 251-260
2. Hayes, J. J., and Hansen, J. C. (2001) Curr. Opin. Genet. Dev. 11, 124-129
3. van Holde, K. E. (1989) Histone Modifications, pp. 111-148, Springer-Verlag New York Inc., New York
4. Rice, J. C., and Allis, C. D. (2001) Curr. Opin. Cell Biol. 13, 263-273
5. Turner, B. M. (2002) Cell 111, 285-291
6. Berger, S. L. (2002) Curr. Opin. Genet. Dev. 12, 142-148
7. Iizuka, M., and Smith, M. M. (2003) Curr. Opin. Genet. Dev. 13, 154-160
8. Liu, C. L., Kaplan, T., Kim, M., Buratowski, S., Schreiber, S. L., Friedman, N., and Rando, O. J. (2005) PLoS Biol. 3, 1753-1769
9. Zhang, Y., and Reinberg, D. (2001) Genes Dev. 15, 2343-2360
10. Lachner, M., and Jenuwein, T. (2002) Curr. Opin. Cell Biol. 14, 286-298
11. Briggs, S. D., Bryk, M., Strahl, B. D., Cheung, W. L., Davie, J. K., Dent, S. Y., Winston, F., and Allis, C. D. (2001) Genes Dev. 15, 3286-3295
12. Roguev, A., Schaft, D., Shevchenko, A., Pijnappel, W. W., Wilm, M., Aasland, R., and Stewart, A. F. (2001) EMBO J. 20, 7137-7148
13. Krogan, N., Dover, J., Khorrami, S., Greenblatt, J. F., Schneider, J., Johnston, M., and Shilatifard, A. (2002) J. Biol. Chem. 277, 10753-10755
14. Nagy, P. L., Griesenbeck, J., Kornberg, R. D., and Cleary, M. L. (2002) Proc. Natl. Acad. Sci. U. S. A. 99, 90-94
15. Bryk, M., Briggs, S. D., Strahl, B. D., Curcio, M. J., Allis, C. D., and Winston, F. (2002) Curr. Biol. 12, 165-170
16. Santos-Rosa, H., Schneider, R., Bannister, A. J., Sherriff, J., Bernstein, B. E., Emre, N. C., Schreiber, S. L., Mellor, J., and Kouzarides, T. (2002) Nature 419, 407-411
17. Strahl, B. D., Grant, P. A., Briggs, S. D., Sun, Z. W., Bone, J. R., Caldwell, J. A., Mollah, S., Cook, R. G., Shabanowitz, J., Hunt, D. F., and Allis, C. D. (2002) Mol. Cell. Biol. 22, 1298-1306
18. Feng, Q., Wang, H., Ng, H. H., Erdjument-Bromage, H., Tempst, P., Struhl, K., and Zhang, Y. (2002) Curr. Biol. 12, 1052-1058
19. Lacoste, N., Utley, R. T., Hunter, J., Poirier, G. G., and Cote, J. (2002) J. Biol. Chem. 277, 30421-30424
20. van Leeuwen, F., Gafken, P. R., and Gottschling, D. E. (2002) Cell 109, 745-756
21. Ng, H. H., Feng, Q., Wang, H., Erdjument-Bromage, H., Tempst, P., Zhang, Y., and Struhl, K. (2002) Genes Dev. 16, 1518-1527
22. Singer, M. S., Kahana, A., Wolf, A. J., Meisinger, L. L., Peterson, S. E., Goggin, C., Mahowald, M., and Gottschling, D. E. (1998) Genetics 150, 613-632
23. Robzyk, K., Recht, L., and Osley, M. A. (2000) Science 287, 501-504
24. Sun, Z. W., and Allis, C. D. (2002) Nature 418, 104-108
25. Dover, J., Schneider, J., Tawiah-Boateng, M. A., Wood, A., Dean, K., Johnston, M., and Shilatifard, A. (2002) J. Biol. Chem. 277, 28368-28371
26. Briggs, S. D., Xiao, T., Sun, Z.-W., Caldwell, J. A., Shabanowitz, J., Hunt, D. F., Allis, C. D., and Strahl, B. D. (2002) Nature 418, 498
27. Ng, H. H., Xu, R. M., Zhang, Y., and Struhl, K. (2002) J. Biol. Chem. 277, 34655-34657
28. Schneider, J., Wood, A., Lee, J. S., Schuster, R., Dueker, J., Maguire, C., Swanson, S. K., Florens, L., Washburn, M. P., and Shilatifard, A. (2005) Mol. Cell 19, 849-856
29. Ezhkova, E., and Tansey, W. P. (2004) Mol. Cell 13, 435-442
30. Henry, K. W., Wyce, A., Lo, W. S., Duggan, L. J., Emre, N. C., Kao, C. F., Pillus, L., Shilatifard, A., Osley, M. A., and Berger, S. L. (2003) Genes Dev. 17, 2648-2663
31. Dehe, P. M., Pamblanco, M., Luciano, P., Lebrun, R., Moinier, D., Sendra, R., Verreault, A., Tordera, V., and Geli, V. (2005) J. Mol. Biol. 353, 477-484
32. Shahbazian, M. D., Zhang, K., and Grunstein, M. (2005) Mol. Cell 19, 271-277
33. Shukla, A., Stanojevic, N., Duan, Z., Sen, P., and Bhaumik, S. R. (2006) Mol. Cell. Biol. 26, 3339-3352
34. Sikorski, R. S., and Hieter, P. (1989) Genetics 122, 19-27
35. Brachmann, C. B., Davies, A., Cost, G. J., Caputo, E., Li, J., Hieter, P., and Boeke, J. D. (1998) Yeast 14, 115-132
36. Li, X.-Y., Bhaumik, S. R., and Green, M. R. (2000) Science 288, 1242-1244
37. Bhaumik, S. R., and Green, M. R. (2003) Methods Enzymol. 370, 445-454
38. Bhaumik, S. R., and Green, M. R. (2002) Mol. Cell. Biol. 22, 7365-7371
39. Bhaumik, S. R., and Green, M. R. (2001) Genes Dev. 15, 1935-1945
40. Bhaumik, S. R., Raha, T., Aiello, D. P., and Green, M. R. (2004) Genes Dev. 18, 333-343
41. Kao, C. F., Hillyer, C., Tsukuda, T., Henry, K., Berger, S., and Osley, M. A. (2004) Genes Dev. 18, 184-195
42. Xiao, T., Kao, C. F., Krogan, N. J., Sun, Z. W., Greenblatt, J. F., Osley, M. A., Strahl, B. D. (2005) Mol. Cell. Biol. 25, 637-651
43. Ng, H. H., Robert, F., Young, R. A., and Struhl, K. (2003) Mol. Cell 11, 709-719
44. Bernstein, B. E., Humphrey, E. L., Erlich, R. L., Schneider, R., Bouman, P., Liu, J. S., Kouzarides, T., and Schreiber, S. L. (2002) Proc. Natl. Acad. Sci. U. S. A. 99, 8695-8697
45. Litt, M. D., Simpson, M., Gaszner, M., Allis, C. D., and Felsenfeld, G. (2001) Science 293, 2453-2455
46. Pokholok, D. K., Harbison, C. T., Levine, S., Cole, M., Hannett, N. M., Lee, T. I., Bell, G. W., Walker, K., Rolfe, P. A., Herbolsheimer, E., Zeitlinger, J., Lewitter, F., Gifford, D. K., and Young, R. A. (2005) Cell 122, 517-527
47. Kao, C. F., and Osley, M. A. (2003) Methods (Orlando) 31, 59-66
48. Laribee, R. N., Krogan, N. J., Xiao, T., Shibata, Y., Hughes, T. R., Greenblatt, J. F., and Strahl, B. D. (2005) Curr. Biol. 15, 1487-1493
49. Boggs, B. A., Cheung, P., Heard, E., Spector, D. L., Chinault, A. C., and Allis, C. D. (2002) Nat. Genet. 30, 73-76
50. Gendrel, A. V., Lippman, Z., Yordan, C., Colot, V., and Martienssen, R. A. (2002) Science 297, 1871-1873
51. Noma, K. I., and Grewel, S. I. (2002) Proc. Natl. Acad. Sci. U. S. A. 99, 16438-16445
52. Reuben, M., and Lin, R. (2002) Dev. Biol. 245, 71-82
53. Strahl, B. D., Ohba, R., Cook, R. G., and Allis, C. D. (1999) Proc. Natl. Acad. Sci. U. S. A. 96, 14967-14972
54. Gerber, M., and Shilatifard, A. (2003) J. Biol. Chem. 278, 26303-26306
55. Hampsey, M., and Reinberg, D. (2003) Cell 113, 429-432
56. Nislow, C., Ray, E., and Pillus, L. (1997) Mol. Biol. Cell 8, 2421-2436
57. Kurdistani, S. K., and Grunstein, M. (2003) Nat. Rev. Mol. Cell. Biol. 4, 276-284
58. Kurdistani, S. K., Tavazoie, S., and Grunstein, M. (2004) Cell 117, 721-733
59. Wang, H., Cao, R., Xia, L., Erdjument-Bromage, H., Borchers, C., Tempst, P., and Zhang, Y. (2001) Mol Cell 8, 1207-1217
60. Daniel, J. A., Torok, M. S., Sun, Z. W., Schieltz, D., Allis, C. D., Yates, Y. R., III, and Grant, P. A. (2004) J. Biol. Chem. 279, 1867-1871
61. Lee, K. K., Florens, L., Swanson, S. K., Washburn, M. P., and Workman, J. L. (2005) Mol. Cell. Biol. 25, 1173-1182
62. Carvin, C. D., and Kladde, M. P. (2004) J. Biol. Chem. 279, 33057-33062
63. Strahl, B. D., and Allis, C. D. (2000) Nature 403, 41-45