SAGA binds TBP via its Spt8 subunit in competition with DNA: Implications for TBP recruitment

EMBO Journal

Volumn 25, Issue 16, 2006, Pages 3791-3800

  Sermwittayawong, Decha ^a   Tan, Song ^a  

^a PENNSYLVANIA STATE UNIVERSITY   (United States)

Author keywords

Coactivator; Gene regulation; TATA binding protein; Transcription

Indexed keywords

DIMER; DNA; MONOMER; PROTEIN SPT8; PROTEIN SUBUNIT; TATA BINDING PROTEIN RELATED FACTOR; TRANSCRIPTION FACTOR SAGA; UNCLASSIFIED DRUG;

ARTICLE; COMPLEX FORMATION; CROSS LINKING; DNA BINDING; GENE CONTROL; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN INTERACTION; TATA BOX; TRANSCRIPTION INITIATION;

DNA; MODELS, BIOLOGICAL; PROMOTER REGIONS (GENETICS); PROTEIN SUBUNITS; SACCHAROMYCES CEREVISIAE PROTEINS; TATA BOX; TATA-BOX BINDING PROTEIN; TRANS-ACTIVATION (GENETICS); TRANS-ACTIVATORS; TRANSCRIPTION FACTORS;

EUKARYOTA;

EID: 33748065020     PISSN: 02614189     EISSN: 14602075     Source Type: Journal    
DOI: 10.1038/sj.emboj.7601265     Document Type: Article

References (48)

1. Barbaric S, Reinke H, Horz W (2003) Multiple mechanistically distinct functions of SAGA at the PHO5 promoter. Mol Cell Biol 23: 3468-3476
2. Belotserkovskaya R, Sterner DE, Deng M, Sayre MH, Lieberman PM, Berger SL (2000) Inhibition of TATA-binding protein function by SAGA subunits Spt3 and Spt8 at Gcn4-activated promoters. Mol Cell Biol 20: 634-647
3. Bhaumik SR, Green MR (2001) SAGA is an essential in vivo target of the yeast acidic activator Gal4p. Genes Dev 15: 1935-1945
4. Bhaumik SR, Green MR (2002) Differential requirement of SAGA components for recruitment of TATA-box-binding protein to promoters in vivo. Mol Cell Biol 22: 7365-7371
5. Brown CE, Howe L, Sousa K, Alley SC, Carrozza MJ, Tan S, Workman JL (2001) Recruitment of HAT complexes by direct activator interactions with the ATM-related Tra1 subunit. Science 292: 2333-2337
6. Burley SK, Roeder RG (1998) TATA box mimicry by TFIID: auto-inhibition of pol II transcription. Cell 94: 551-553
7. Chasman DI, Flaherty KM, Sharp PA, Kornberg RD (1993) Crystal structure of yeast TATA-binding protein and model for interaction with DNA. Proc Natl Acad Sci USA 90: 8174-8178
8. Chatterjee S, Struhl K (1995) Connecting a promoter-bound protein to TBP bypasses the need for a transcriptional activation domain. Nature 374: 820-822
9. Coleman RA, Taggart AK, Benjamin LR, Pugh BF (1995) Dimerization of the TATA binding protein. J Biol Chem 270: 13842-13849
10. Cormack BP, Strubin M, Stargell LA, Struhl K (1994) Conserved and nonconserved functions of the yeast and human TATA-binding proteins. Genes Dev 8: 1335-1343
11. Cosma MP, Tanaka T, Nasmyth K (1999) Ordered recruitment of transcription and chromatin remodeling factors to a cell cycle-and developmentally regulated promoter. Cell 97: 299-311
12. DeDecker BS, O'Brien R, Fleming PJ, Geiger JH, Jackson SP, Sigler PB (1996) The crystal structure of a hyperthermophilic archaeal TATA-box binding protein. J Mol Biol 264: 1072-1084
13. Dudley AM, Rougeulle C, Winston F (1999) The Spt components of SAGA facilitate TBP binding to a promoter at a post-activator-binding step in vivo. Genes Dev 13: 2940-2945
14. Eberharter A, John S, Grant PA, Utley RT, Workman JL (1998) Identification and analysis of yeast nucleosomal histone acetyltransferase complexes. Methods 15: 315-321
15. Eisenmann DM, Arndt KM, Ricupero SL, Rooney JW, Winston F (1992) SPT3 interacts with TFIID to allow normal transcription in Saccharomyces cerevisiae. Genes Dev 6: 1319-1331
16. Eisenmann DM, Chapon C, Roberts SM, Dollard C, Winston F (1994) The Saccharomyces cerevisiae SPT8 gene encodes a very acidic protein that is functionally related to SPT3 and TATA-binding protein. Genetics 137: 647-657
17. Ferrin TE, Huang CC, Jarvis LE, Langridge R (1988) The MIDAS display system. J Mol Graph 6: 13-27
18. Gangloff YG, Werten S, Romier C, Carre L, Poch O, Moras D, Davidson I (2000) The human TFIID components TAF(II)135 and TAF(II)20 and the yeast SAGA components ADA1 and TAF(II)68 heterodimerize to form histone-like pairs. Mol Cell Biol 20: 340-351
19. Govind CK, Yoon S, Qiu H, Govind S, Hinnebusch AG (2005) Simultaneous recruitment of coactivators by Gcn4p stimulates multiple steps of transcription in vivo. Mol Cell Biol 25: 5626-5638
20. Hampsey M (1998) Molecular genetics of the RNA polymerase II general transcriptional machinery. Microbiol Mol Biol Rev 62: 465-503
21. Huisinga KL, Pugh BF (2004) A genome-wide housekeeping role for TFIID and a highly regulated stress-related role for SAGA in Saccharomyces cerevisiae. Mol Cell 13: 573-585
22. Jackson-Fisher AJ, Chitikila C, Mitra M, Pugh BF (1999) A role for TBP dimerization in preventing unregulated gene expression. Mol Cell 3: 717-727
23. Kim JL, Nikolov DB, Burley SK (1993a) Co-crystal structure of TBP recognizing the minor groove of a TATA element. Nature 365: 520-527
24. Kim Y, Geiger JH, Hahn S, Sigler PB (1993b) Crystal structure of a yeast TBP/TATA-box complex. Nature 365: 512-520
25. Kotani T, Banno K, Ikura M, Hinnebusch AG, Nakatani Y, Kawaichi M, Kokubo T (2000) A role of transcriptional activators as antirepressors for the autoinhibitory activity of TATA box binding of transcription factor IID. Proc Natl Acad Sci USA 97: 7178-7183
26. Kou H, Pugh BF (2004) Engineering dimer-stabilizing mutations in the TATA-binding protein. J Biol Chem 279: 20966-20973
27. Kuras L, Struhl K (1999) Binding of TBP to promoters in vivo is stimulated by activators and requires Pol II holoenzyme. Nature 399: 609-613
28. Larschan E, Winston F (2001) The S. cerevisiae SAGA complex functions in vivo as a coactivator for transcriptional activation by Gal4. Genes Dev 15: 1946-1956
29. Larschan E, Winston F (2005) The Saccharomyces cerevisiae Srb8-Srb11 complex functions with the SAGA complex during Gal4-activated transcription. Mol Cell Biol 25: 114-123
30. Lee D, Ezhkova E, Li B, Pattenden SG, Tansey WP, Workman JL (2005) The proteasome regulatory particle alters the SAGA coactivator to enhance its interactions with transcriptional activators. Cell 123: 423-436
31. Lee TI, Causton HC, Holstege FC, Shen WC, Hannett N, Jennings EG, Winston F, Green MR, Young RA (2000) Redundant roles for the TFIID and SAGA complexes in global transcription. Nature 405: 701-704
32. Li XY, Virbasius A, Zhu X, Green MR (1999) Enhancement of TBP binding by activators and general transcription factors. Nature 399: 605-609
33. Liu D, Ishima R, Tong KI, Bagby S, Kokubo T, Muhandiram DR, Kay LE, Nakatani Y, Ikura M (1998) Solution structure of a TBP-TAF(II)230 complex: protein mimicry of the minor groove surface of the TATA box unwound by TBP. Cell 94: 573-583
34. Marchler-Bauer A, Bryant SH (2004) CD-Search: protein domain annotations on the fly. Nucleic Acids Res 32: W327-W331
35. Naar AM, Lemon BD, Tjian R (2001) Transcriptional coactivator complexes. Annu Rev Biochem 70: 475-501
36. Neely KE, Hassan AH, Brown CE, Howe L, Workman JL (2002) Transcription activator interactions with multiple SWI/SNF subunits. Mol Cell Biol 22: 1615-1625
37. Nikolov DB, Hu SH, Lin J, Gasch A, Hoffmann A, Horikoshi M, Chua NH, Roeder RG, Burley SK (1992) Crystal structure of TFIID TATA-box binding protein. Nature 360: 40-46
38. Nishikawa J, Kokubo T, Horikoshi M, Roeder RG, Nakatani Y (1997) Drosophila TAF(II)230 and the transcriptional activator VP16 bind competitively to the TATA box-binding domain of the TATA box-binding protein. Proc Natl Acad Sci USA 94: 85-90
39. Puig O, Caspary F, Rigaut G, Rutz B, Bouveret E, Bragado-Nilsson E, Wilm M, Seraphin B (2001) The tandem affinity purification (TAP) method: a general procedure of protein complex purification. Methods 24: 218-229
40. Qiu H, Hu C, Zhang F, Hwang GJ, Swanson MJ, Boonchird C, Hinnebusch AG (2005) Interdependent recruitment of SAGA and Srb mediator by transcriptional activator Gcn4p. Mol Cell Biol 25: 3461-3474
41. Reddy P, Hahn S (1991) Dominant negative mutations in yeast TFIID define a bipartite DNA-binding region. Cell 65: 349-357
42. Ricci AR, Genereaux J, Brandl CJ (2002) Components of the SAGA histone acetyltransferase complex are required for repressed transcription of ARG1 in rich medium. Mol Cell Biol 22: 4033-4042
43. Stargell LA, Struhl K (1996) A new class of activation-defective TATA-binding protein mutants: evidence for two steps of transcriptional activation in vivo. Mol Cell Biol 16: 4456-4464
44. Sterner DE, Grant PA, Roberts SM, Duggan LJ, Belotserkovskaya R, Pacella LA, Winston F, Workman JL, Berger SL (1999) Functional organization of the yeast SAGA complex: distinct components involved in structural integrity, nucleosome acetylation, and TATA-binding protein interaction. Mol Cell Biol 19: 86-98
45. Warfield L, Ranish JA, Hahn S (2004) Positive and negative functions of the SAGA complex mediated through interaction of Spt8 with TBP and the N-terminal domain of TFIIA. Genes Dev 18: 1022-1034
46. Wu PY, Winston F (2002) Analysis of Spt7 function in the Saccharomyces cerevisiae SAGA coactivator complex. Mol Cell Biol 22: 5367-5379
47. Xiao H, Friesen JD, Lis JT (1995) Recruiting TATA-binding protein to a promoter: transcriptional activation without an upstream activator. Mol Cell Biol 15: 5757-5761
48. Yu Y, Eriksson P, Bhoite LT, Stillman DJ (2003) Regulation of TATA-binding protein binding by the SAGA complex and the Nhp6 high-mobility group protein. Mol Cell Biol 23: 1910-1921