-
1
-
-
59749098821
-
Frameshifting RNA pseudoknots: Structure and mechanism
-
Giedroc DP, Cornish PV (2009) Frameshifting RNA pseudoknots: Structure and mechanism. Virus Res 139:193-208.
-
(2009)
Virus Res
, vol.139
, pp. 193-208
-
-
Giedroc, D.P.1
Cornish, P.V.2
-
2
-
-
77349093307
-
Pseudoknot-dependent programmed -1 ribosomal frameshifting: Structures, mechanisms and models
-
Brierley I, Gilbert RJC, Pennell S (2010) Pseudoknot-dependent programmed -1 ribosomal frameshifting: Structures, mechanisms and models. Nucleic Acids Mol Biol 24:149-174.
-
(2010)
Nucleic Acids Mol Biol
, vol.24
, pp. 149-174
-
-
Brierley, I.1
Gilbert, R.J.C.2
Pennell, S.3
-
3
-
-
0022411386
-
Expression of the Rous sarcoma virus pol gene by ribosomal frameshifting
-
Jacks T, Varmus HE (1985) Expression of the Rous sarcoma virus pol gene by ribosomal frameshifting. Science 230:1237-1242. (Pubitemid 16194530)
-
(1985)
Science
, vol.230
, Issue.4731
, pp. 1237-1242
-
-
Jacks, T.1
Varmus, H.E.2
-
4
-
-
0029870925
-
Programmed translational frameshifting
-
Farabaugh PJ (1996) Programmed translational frameshifting. Microbiol Rev 60:103-134.
-
(1996)
Microbiol Rev
, vol.60
, pp. 103-134
-
-
Farabaugh, P.J.1
-
5
-
-
0026643735
-
Ribosomal frameshifting efficiency and gag/gag-pol ratio are critical for yeast M1 double-stranded RNA virus propagation
-
Dinman JD, Wickner RB (1992) Ribosomal frameshifting efficiency and gag/gag-pol ratio are critical for yeast M1 double-stranded RNA virus propagation. J Virol 66:3669-3676.
-
(1992)
J Virol
, vol.66
, pp. 3669-3676
-
-
Dinman, J.D.1
Wickner, R.B.2
-
6
-
-
30844443739
-
Decreasing the frameshift efficiency translates into an equivalent reduction of the replication of the human immunodeficiency virus type 1
-
DOI 10.1016/j.virol.2005.08.048, PII S0042682205006288
-
Dulude D, Berchiche YA, Gendron K, Brakier-Gingras L, Heveker N (2006) Decreasing the frameshift efficiency translates into an equivalent reduction of the replication of the human immunodeficiency virus type 1. Virology 345:127-136. (Pubitemid 43107578)
-
(2006)
Virology
, vol.345
, Issue.1
, pp. 127-136
-
-
Dulude, D.1
Berchiche, Y.A.2
Gendron, K.3
Brakier-Gingras, L.4
Heveker, N.5
-
7
-
-
15044348272
-
Characterization of the frameshift signal of Edr, a mammalian example of programmed -1 ribosomal frameshifting
-
Manktelow E, Shigemoto K, Brierley I (2005) Characterization of the frameshift signal of Edr, a mammalian example of programmed -1 ribosomal frameshifting. Nucleic Acids Res 33:1553-1563.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 1553-1563
-
-
Manktelow, E.1
Shigemoto, K.2
Brierley, I.3
-
8
-
-
33646359444
-
A functional -1 ribosomal frameshift signal in the human paraneoplastic Ma3 gene
-
Wills NM, Moore B, Hammer A, Gesteland RF, Atkins JF (2006) A functional -1 ribosomal frameshift signal in the human paraneoplastic Ma3 gene. J Biol Chem 281:7082-7088.
-
(2006)
J Biol Chem
, vol.281
, pp. 7082-7088
-
-
Wills, N.M.1
Moore, B.2
Hammer, A.3
Gesteland, R.F.4
Atkins, J.F.5
-
9
-
-
79960092700
-
Programmed ribosomal frameshifting in the expression of the regulator of intestinal stem cell proliferation, adenomatous polyposis coli (APC)
-
Baranov PV, et al. (2011) Programmed ribosomal frameshifting in the expression of the regulator of intestinal stem cell proliferation, adenomatous polyposis coli (APC). RNA Biol 8:637-647.
-
(2011)
RNA Biol
, vol.8
, pp. 637-647
-
-
Baranov, P.V.1
-
10
-
-
0025086640
-
RNA pseudoknots: Translational frameshifting and readthrough on viral RNAs
-
ten Dam E, Pleij C, Bosch L (1990) RNA pseudoknots: Translational frameshifting and readthrough on viral RNAs. Virus Genes 4:121-136. (Pubitemid 20380467)
-
(1990)
Virus Genes
, vol.4
, Issue.2
, pp. 121-136
-
-
Ten, D.E.B.1
Pleij, C.W.A.2
Bosch, L.3
-
12
-
-
0026758711
-
Mutational analysis of the "slippery-sequence"component of a coronavirus ribosomal frameshifting signal
-
Brierley I, Jenner AJ, Inglis SC (1992) Mutational analysis of the "slippery-sequence"component of a coronavirus ribosomal frameshifting signal. J Mol Biol 227:463-479.
-
(1992)
J Mol Biol
, vol.227
, pp. 463-479
-
-
Brierley, I.1
Jenner, A.J.2
Inglis, S.C.3
-
13
-
-
0026483177
-
Structural and functional aspects of RNA pseudoknots
-
ten Dam E, Pleij K, Draper D (1992) Structural and functional aspects of RNA pseudoknots. Biochemistry 31:11665-11676.
-
(1992)
Biochemistry
, vol.31
, pp. 11665-11676
-
-
Ten Dam, E.1
Pleij, K.2
Draper, D.3
-
14
-
-
0024277965
-
Signals for ribosomal frameshifting in the Rous sarcoma virus gag-pol region
-
Jacks T, Madhani HD, Masiarz FR, Varmus HE (1988) Signals for ribosomal frameshifting in the Rous sarcoma virus gag-pol region. Cell 55:447-458.
-
(1988)
Cell
, vol.55
, pp. 447-458
-
-
Jacks, T.1
Madhani, H.D.2
Masiarz, F.R.3
Varmus, H.E.4
-
15
-
-
0037316485
-
The 9-Å solution: How mRNA pseudoknots promote efficient programmed -1 ribosomal frameshifting
-
DOI 10.1261/rna.2132503
-
Plant EP, et al. (2003) The 9-Å solution: How mRNA pseudoknots promote efficient programmed -1 ribosomal frameshifting. RNA 9:168-174. (Pubitemid 36206284)
-
(2003)
RNA
, vol.9
, Issue.2
, pp. 168-174
-
-
Plant, E.P.1
Jacobs, K.L.M.2
Harger, J.W.3
Meskauskas, A.4
Jacobs, J.L.5
Baxter, J.L.6
Petrov, A.N.7
Dinman, J.D.8
-
16
-
-
17844384225
-
Torsional restraint: A new twist on frameshifting pseudoknots
-
DOI 10.1093/nar/gki329
-
Plant EP, Dinman JD (2005) Torsional restraint: A new twist on frameshifting pseudoknots. Nucleic Acids Res 33:1825-1833. (Pubitemid 41748329)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.6
, pp. 1825-1833
-
-
Plant, E.P.1
Dinman, J.D.2
-
17
-
-
33646557329
-
A mechanical explanation of RNA pseudoknot function in programmed ribosomal frameshifting
-
Namy O, Moran SJ, Stuart DI, Gilbert RJ, Brierley I (2006) A mechanical explanation of RNA pseudoknot function in programmed ribosomal frameshifting. Nature 441:244-247.
-
(2006)
Nature
, vol.441
, pp. 244-247
-
-
Namy, O.1
Moran, S.J.2
Stuart, D.I.3
Gilbert, R.J.4
Brierley, I.5
-
18
-
-
0035200990
-
Ribosomal pausing at a frameshifter RNA pseudoknot is sensitive to reading phase but shows little correlation with frameshift efficiency
-
DOI 10.1128/MCB.21.24.8657-8670.2001
-
Kontos H, Napthine S, Brierley I (2001) Ribosomal pausing at a frameshifter RNA pseudoknot is sensitive to reading phase but shows little correlation with frameshift efficiency. Mol Cell Biol 21:8657-8670. (Pubitemid 33108622)
-
(2001)
Molecular and Cellular Biology
, vol.21
, Issue.24
, pp. 8657-8670
-
-
Kontos, H.1
Napthine, S.2
Brierley, I.3
-
19
-
-
79959676389
-
The ribosome uses two active mechanisms to unwind messenger RNA during translation
-
Qu X, et al. (2011) The ribosome uses two active mechanisms to unwind messenger RNA during translation. Nature 475:118-121.
-
(2011)
Nature
, vol.475
, pp. 118-121
-
-
Qu, X.1
-
20
-
-
41149155366
-
Following translation by single ribosomes one codon at a time
-
Wen JD, et al. (2008) Following translation by single ribosomes one codon at a time. Nature 452:598-603.
-
(2008)
Nature
, vol.452
, pp. 598-603
-
-
Wen, J.D.1
-
21
-
-
42449095556
-
Predicting ribosomal frameshifting efficiency
-
Cao S, Chen SJ (2008) Predicting ribosomal frameshifting efficiency. Phys Biol 5:016002.
-
(2008)
Phys Biol
, vol.5
, pp. 016002
-
-
Cao, S.1
Chen, S.J.2
-
22
-
-
0033532080
-
The role of RNA pseudoknot stem 1 length in the promotion of efficient -1 ribosomal frameshifting
-
DOI 10.1006/jmbi.1999.2688
-
Napthine S, Liphardt J, Bloys A, Routledge S, Brierley I (1999) The role of RNA pseudoknot stem 1 length in the promotion of efficient -1 ribosomal frameshifting. J Mol Biol 288:305-320. (Pubitemid 29221804)
-
(1999)
Journal of Molecular Biology
, vol.288
, Issue.3
, pp. 305-320
-
-
Napthine, S.1
Liphardt, J.2
Bloys, A.3
Routledge, S.4
Brierley, I.5
-
23
-
-
0028962374
-
Structural and functional studies of retroviral RNA pseudoknots involved in ribosomal frameshifting: Nucleotides at the junction of the two stems are important for efficient ribosomal frameshifting
-
Chen X, et al. (1995) Structural and functional studies of retroviral RNA pseudoknots involved in ribosomal frameshifting: Nucleotides at the junction of the two stems are important for efficient ribosomal frameshifting. EMBO J 14:842-852.
-
(1995)
EMBO J
, vol.14
, pp. 842-852
-
-
Chen, X.1
-
24
-
-
0030011355
-
Conformation of a non-frameshifting RNA pseudoknot from mouse mammary tumor virus
-
DOI 10.1006/jmbi.1996.0308
-
Kang H, Hines JV, Tinoco I, Jr (1996) Conformation of a non-frameshifting RNA pseudoknot from mouse mammary tumor virus. J Mol Biol 259:135-147. (Pubitemid 26162627)
-
(1996)
Journal of Molecular Biology
, vol.259
, Issue.1
, pp. 135-147
-
-
Kang, H.1
Hines, J.V.2
Tinoco Jr., I.3
-
25
-
-
4644308292
-
Efficient stimulation of site-specific ribosome frameshifting by antisense oligonucleotides
-
DOI 10.1261/rna.7810204
-
Howard MT, Gesteland RF, Atkings JF (2004) Efficient stimulation of site-specific ribosome frameshifting by antisense oligonucleotides. RNA 10:1653-1661. (Pubitemid 39288198)
-
(2004)
RNA
, vol.10
, Issue.10
, pp. 1653-1661
-
-
Howard, M.T.1
Gesteland, R.F.2
Atkins, J.F.3
-
26
-
-
80455129659
-
Stem-loop structures can effectively substitute for an RNA pseudoknot in -1 ribosomal frameshifting
-
Yu CH, Noteborn MH, Pleij CW, Olsthoorn RC (2011) Stem-loop structures can effectively substitute for an RNA pseudoknot in -1 ribosomal frameshifting. Nucleic Acids Res 39:8952-8959.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 8952-8959
-
-
Yu, C.H.1
Noteborn, M.H.2
Pleij, C.W.3
Olsthoorn, R.C.4
-
27
-
-
0028910590
-
The structure of an RNA pseudoknot that causes efficient frameshifting in mouse mammary tumor virus
-
Shen LX, Tinoco I, Jr (1995) The structure of an RNA pseudoknot that causes efficient frameshifting in mouse mammary tumor virus. J Mol Biol 247:963-978.
-
(1995)
J Mol Biol
, vol.247
, pp. 963-978
-
-
Shen, L.X.1
Tinoco Jr., I.2
-
28
-
-
0033010932
-
Minor groove RNA triplex in the crystal structure of a ribosomal frameshifting viral pseudoknot
-
DOI 10.1038/6722
-
Su L, Chen L, Egli M, Berger JM, Rich A (1999) Minor groove RNA triplex in the crystal structure of a ribosomal frameshifting viral pseudoknot. Nat Struct Biol 6:285-292. (Pubitemid 29107232)
-
(1999)
Nature Structural Biology
, vol.6
, Issue.3
, pp. 285-292
-
-
Su, L.1
Chen, L.2
Egli, M.3
Berger, J.M.4
Rich, A.5
-
29
-
-
0033452721
-
Specific mutations in a viral RNA pseudoknot drastically change ribosomal frameshifting efficiency
-
DOI 10.1073/pnas.96.25.14234
-
Kim YG, Su L, Maas S, O'Neill A, Rich A (1999) Specific mutations in a viral RNA pseudoknot drastically change ribosomal frameshifting efficiency. Proc Natl Acad Sci USA 96:14234-14239. (Pubitemid 30000634)
-
(1999)
Proceedings of the National Academy of Sciences of the United States of America
, vol.96
, Issue.25
, pp. 14234-14239
-
-
Kim, Y.-G.1
Su, L.2
Maas, S.3
O'Neill, A.4
Rich, A.5
-
30
-
-
0033532081
-
Evidence for an RNA pseudoknot loop-helix interaction essential for efficient -1 ribosomal frameshifting
-
DOI 10.1006/jmbi.1999.2689
-
Liphardt J, Napthine S, Kontos H, Brierley I (1999) Evidence for an RNA pseudoknot loop-helix interaction essential for efficient -1 ribosomal frameshifting. J Mol Biol 288:321-335. (Pubitemid 29221805)
-
(1999)
Journal of Molecular Biology
, vol.288
, Issue.3
, pp. 321-335
-
-
Liphardt, J.1
Napthine, S.2
Kontos, H.3
Brierley, I.4
-
31
-
-
0035958689
-
Solution structure of the pseudoknot of SRV-1 RNA, involved in ribosomal frameshifting
-
DOI 10.1006/jmbi.2001.4823
-
Michiels PJ, et al. (2001) Solution structure of the pseudoknot of SRV-1 RNA, involved in ribosomal frameshifting. J Mol Biol 310:1109-1123. (Pubitemid 32738381)
-
(2001)
Journal of Molecular Biology
, vol.310
, Issue.5
, pp. 1109-1123
-
-
Michiels, P.J.A.1
Versleijen, A.A.M.2
Verlaan, P.W.3
Pleij, C.W.A.4
Hilbers, C.W.5
Heus, H.A.6
-
32
-
-
0036385783
-
Solution structure of a luteoviral P1-P2 frameshifting mRNA pseudoknot
-
Nixon PL, et al. (2002) Solution structure of a luteoviral P1-P2 frameshifting mRNA pseudoknot. J Mol Biol 322:621-633.
-
(2002)
J Mol Biol
, vol.322
, pp. 621-633
-
-
Nixon, P.L.1
-
34
-
-
69149104281
-
Triplex structures in an RNA pseudoknot enhance mechanical stability and increase efficiency of -1 ribosomal frameshifting
-
Chen G, Chang KY, Chou MY, Bustamante C, Tinoco I, Jr (2009) Triplex structures in an RNA pseudoknot enhance mechanical stability and increase efficiency of -1 ribosomal frameshifting. Proc Natl Acad Sci USA 106:12706-12711.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 12706-12711
-
-
Chen, G.1
Chang, K.Y.2
Chou, M.Y.3
Bustamante, C.4
Tinoco Jr., I.5
-
35
-
-
78649893453
-
Functional analysis of the SRV-1 RNA frameshifting pseudoknot
-
Olsthoorn RC, Reumerman R, Hilbers CW, Pleij CW, Heus HA (2010) Functional analysis of the SRV-1 RNA frameshifting pseudoknot. Nucleic Acids Res 38:7665-7672.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 7665-7672
-
-
Olsthoorn, R.C.1
Reumerman, R.2
Hilbers, C.W.3
Pleij, C.W.4
Heus, H.A.5
-
36
-
-
36749056800
-
Characterization of the Mechanical Unfolding of RNA Pseudoknots
-
DOI 10.1016/j.jmb.2007.05.058, PII S0022283607007115
-
Green L, Kim CH, Bustamante C, Tinoco I, Jr (2008) Characterization of the mechanical unfolding of RNA pseudoknots. J Mol Biol 375:511-528. (Pubitemid 350199660)
-
(2008)
Journal of Molecular Biology
, vol.375
, Issue.2
, pp. 511-528
-
-
Green, L.1
Kim, C.-H.2
Bustamante, C.3
Tinoco Jr., I.4
-
37
-
-
34347256404
-
Correlation between mechanical strength of messenger RNA pseudoknots and ribosomal frameshifting
-
DOI 10.1073/pnas.0608668104
-
Hansen TM, Reihani SN, Oddershede LB, Sørensen MA (2007) Correlation between mechanical strength of messenger RNA pseudoknots and ribosomal frameshifting. Proc Natl Acad Sci USA 104:5830-5835. (Pubitemid 47175619)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.14
, pp. 5830-5835
-
-
Hansen, T.M.1
Nader S, R.S.2
Oddershede, L.B.3
Sorensen, M.A.4
-
38
-
-
36248968677
-
Single-molecule mechanical unfolding and folding of a pseudoknot in human telomerase RNA
-
DOI 10.1261/rna.676707
-
Chen G, Wen JD, Tinoco I, Jr (2007) Single-molecule mechanical unfolding and refolding of a pseudoknot in human telomerase RNA. RNA 13:2175-2188. (Pubitemid 350127559)
-
(2007)
RNA
, vol.13
, Issue.12
, pp. 2175-2188
-
-
Chen, G.1
Wen, J.-D.2
Tinoco Jr., I.3
-
39
-
-
79959503033
-
Mechanical unfolding of the beet western yellow virus -1 frameshift signal
-
White KH, Orzechowski M, Fourmy D, Visscher K (2011) Mechanical unfolding of the beet western yellow virus -1 frameshift signal. J Am Chem Soc 133:9775-9782.
-
(2011)
J Am Chem Soc
, vol.133
, pp. 9775-9782
-
-
White, K.H.1
Orzechowski, M.2
Fourmy, D.3
Visscher, K.4
-
41
-
-
33645004171
-
Intrinsic rates and activation free energies from single-molecule pulling experiments
-
Dudko OK, Hummer G, Szabo A (2006) Intrinsic rates and activation free energies from single-molecule pulling experiments. Phys Rev Lett 96:108101-108104.
-
(2006)
Phys Rev Lett
, vol.96
, pp. 108101-108104
-
-
Dudko, O.K.1
Hummer, G.2
Szabo, A.3
-
42
-
-
57349124448
-
Theory, analysis, and interpretation of single-molecule force spectroscopy experiments
-
Dudko OK, Hummer G, Szabo A (2008) Theory, analysis, and interpretation of single-molecule force spectroscopy experiments. Proc Natl Acad Sci USA 105:15755-15760.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 15755-15760
-
-
Dudko, O.K.1
Hummer, G.2
Szabo, A.3
-
43
-
-
79961021741
-
Experimental validation of free-energy-landscape reconstruction from non-equilibrium single-molecule force spectroscopy measurements
-
Gupta AN, et al. (2011) Experimental validation of free-energy-landscape reconstruction from non-equilibrium single-molecule force spectroscopy measurements. Nat Phys 7:631-634.
-
(2011)
Nat Phys
, vol.7
, pp. 631-634
-
-
Gupta, A.N.1
-
44
-
-
0034724565
-
Structure, stability and function of RNA pseudoknots involved in stimulating ribosomal frameshifting
-
Giedroc DP, Theimer CA, Nixon PL (2000) Structure, stability and function of RNA pseudoknots involved in stimulating ribosomal frameshifting. J Mol Biol 298:167-185.
-
(2000)
J Mol Biol
, vol.298
, pp. 167-185
-
-
Giedroc, D.P.1
Theimer, C.A.2
Nixon, P.L.3
-
45
-
-
0036675593
-
Comparative studies of frameshifting and nonframeshifting RNA pseudoknots: A mutational and NMR investigation of pseudoknots derived from the bacteriophage T2 gene 32 mRNA and the retroviral gag-pro frameshift site
-
Wang Y, et al. (2002) Comparative studies of frameshifting and nonframeshifting RNA pseudoknots: A mutational and NMR investigation of pseudoknots derived from the bacteriophage T2 gene 32 mRNA and the retroviral gag-pro frameshift site. RNA 8:981-996.
-
(2002)
RNA
, vol.8
, pp. 981-996
-
-
Wang, Y.1
-
46
-
-
45749109340
-
The stimulatory RNA of the Visna-Maedi retrovirus ribosomal frameshifting signal is an unusual pseudoknot with an interstem element
-
DOI 10.1261/rna.1042108
-
Pennell S, et al. (2008) The stimulatory RNA of the Visna-Maedi retrovirus ribosomal frameshifting signal is an unusual pseudoknot with an interstem element. RNA 14:1366-1377. (Pubitemid 351872193)
-
(2008)
RNA
, vol.14
, Issue.7
, pp. 1366-1377
-
-
Pennell, S.1
Manktelow, E.2
Flatt, A.3
Kelly, G.4
Smerdon, S.J.5
Brierley, I.6
-
47
-
-
0026598965
-
An RNA pseudoknot and an optimal heptameric shift site are required for highly efficient ribosomal frameshifting on a retroviral messenger RNA
-
Chamorro M, Parkin N, Varmus HE (1992) An RNA pseudoknot and an optimal heptameric shift site are required for highly efficient ribosomal frameshifting on a retroviral messenger RNA. Proc Natl Acad Sci USA 89:713-717.
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 713-717
-
-
Chamorro, M.1
Parkin, N.2
Varmus, H.E.3
-
48
-
-
33748760172
-
The global structures of a wild-type and poorly functional plant luteoviral mRNA pseudoknot are essentially identical
-
DOI 10.1261/rna.199006
-
Cornish PV, Stammler SN, Giedroc DP (2006) The global structures of a wild-type and poorly functional plant luteoviral mRNA pseudoknot are essentially identical. RNA 12:1959-1969. (Pubitemid 44771755)
-
(2006)
RNA
, vol.12
, Issue.11
, pp. 1959-1969
-
-
Cornish, P.V.1
Stammler, S.N.2
Giedroc, D.P.3
-
49
-
-
13144277572
-
Programmed ribosomal frameshifting in decoding the SARS-CoV genome
-
DOI 10.1016/j.virol.2004.11.038, PII S004268220400813X
-
Baranov PV, et al. (2005) Programmed ribosomal frameshifting in decoding the SARS-CoV genome. Virology 332:498-510. (Pubitemid 40179188)
-
(2005)
Virology
, vol.332
, Issue.2
, pp. 498-510
-
-
Baranov, P.V.1
Henderson, C.M.2
Anderson, C.B.3
Gesteland, R.F.4
Atkins, J.F.5
Howard, M.T.6
-
50
-
-
0033061281
-
An examination of coaxial stacking of helical stems in a pseudoknot motif: The gene 32 messenger RNA pseudoknot of bacteriophage T2
-
DOI 10.1017/S1355838299981360
-
Holland JA, Hansen MR, Du Z, Hoffman DW (1999) An examination of coaxial stacking of helical stems in a pseudoknot motif: The gene 32 messenger RNA pseudoknot of bacteriophage T2. RNA 5:257-271. (Pubitemid 29079285)
-
(1999)
RNA
, vol.5
, Issue.2
, pp. 257-271
-
-
Holland, J.A.1
Hansen, M.R.2
Du, Z.3
Hoffman, D.W.4
-
51
-
-
22744450786
-
A three-stemmed mRNA pseudoknot in the SARS coronavirus frameshift signal
-
Plant EP, et al. (2005) A three-stemmed mRNA pseudoknot in the SARS coronavirus frameshift signal. PLoS Biol 3:e172.
-
(2005)
PLoS Biol
, vol.3
-
-
Plant, E.P.1
-
52
-
-
79959876045
-
Identification of RNA pseudoknot-binding ligand that inhibits the -1 ribosomal frameshifting of SARS-coronavirus by structure-based virtual screening
-
Park SJ, Kim YG, Park HJ (2011) Identification of RNA pseudoknot-binding ligand that inhibits the -1 ribosomal frameshifting of SARS-coronavirus by structure-based virtual screening. J Am Chem Soc 133:10094-10100.
-
(2011)
J Am Chem Soc
, vol.133
, pp. 10094-10100
-
-
Park, S.J.1
Kim, Y.G.2
Park, H.J.3
-
53
-
-
80053216036
-
Single-molecule force spectroscopy of the add adenine riboswitch relates folding to regulatory mechanism
-
Neupane K, Yu H, Foster DA, Wang F, Woodside MT (2011) Single-molecule force spectroscopy of the add adenine riboswitch relates folding to regulatory mechanism. Nucleic Acids Res 39:7677-7687.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 7677-7687
-
-
Neupane, K.1
Yu, H.2
Foster, D.A.3
Wang, F.4
Woodside, M.T.5
-
54
-
-
0035957720
-
Reversible unfolding of single RNA molecules by mechanical force
-
DOI 10.1126/science.1058498
-
Liphardt J, Onoa B, Smith SB, Tinoco I, Jr, Bustamante C (2001) Reversible unfolding of single RNA molecules by mechanical force. Science 292:733-737. (Pubitemid 32385545)
-
(2001)
Science
, vol.292
, Issue.5517
, pp. 733-737
-
-
Liphardt, J.1
Onoa, B.2
Smith, S.B.3
Tinoco Jr., I.4
Bustamante, C.5
-
55
-
-
38849204944
-
Direct observation of hierarchical folding in single riboswitch aptamers
-
DOI 10.1126/science.1151298
-
Greenleaf WJ, Frieda KL, Foster DAN, Woodside MT, Block SM (2008) Direct observation of hierarchical folding in single riboswitch aptamers. Science 319:630-633. (Pubitemid 351197067)
-
(2008)
Science
, vol.319
, Issue.5863
, pp. 630-633
-
-
Greenleaf, W.J.1
Frieda, K.L.2
Foster, D.A.N.3
Woodside, M.T.4
Block, S.M.5
-
56
-
-
33646587736
-
Nanomechanical measurements of the sequence-dependent folding landscapes of single nucleic acid hairpins
-
Woodside MT, et al. (2006) Nanomechanical measurements of the sequence-dependent folding landscapes of single nucleic acid hairpins. Proc Natl Acad Sci USA 103:6190-6195.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 6190-6195
-
-
Woodside, M.T.1
-
57
-
-
14644435818
-
Structure of the human telomerase RNA pseudoknot reveals conserved tertiary interactions essential for function
-
DOI 10.1016/j.molcel.2005.01.017
-
Theimer CA, Blois CA, Feigon J (2005) Structure of the human telomerase RNA pseudoknot reveals conserved tertiary interactions essential for function. Mol Cell 17:671-682. (Pubitemid 40320917)
-
(2005)
Molecular Cell
, vol.17
, Issue.5
, pp. 671-682
-
-
Theimer, C.A.1
Blois, C.A.2
Feigon, J.3
-
58
-
-
0030602904
-
A characteristic bent conformation of RNA pseudoknots promotes - 1. Frameshifting during translation of retroviral RNA
-
DOI 10.1006/jmbi.1996.0415
-
Chen X, et al. (1996) A characteristic bent conformation of RNA pseudoknots promotes -1 frameshifting during translation of retroviral RNA. J Mol Biol 260:479-483. (Pubitemid 26254237)
-
(1996)
Journal of Molecular Biology
, vol.260
, Issue.4
, pp. 479-483
-
-
Chen, X.1
Kang, H.2
Shen, L.X.3
Chamorro, M.4
Varmus, H.E.5
Tinoco Jr., I.6
-
59
-
-
23944524314
-
Crystal structure of a luteoviral RNA pseudoknot and model for a minimal ribosomal frameshifting motif
-
DOI 10.1021/bi051061i
-
Pallan PS, et al. (2005) Crystal structure of a luteoviral RNA pseudoknot and model for a minimal ribosomal frameshift motif. Biochemistry 44:11315-11322. (Pubitemid 41209067)
-
(2005)
Biochemistry
, vol.44
, Issue.34
, pp. 11315-11322
-
-
Pallan, P.S.1
Marshall, W.S.2
Harp, J.3
Jewett III, F.C.4
Wawrzak, Z.5
Brown II, B.A.6
Rich, A.7
Egli, M.8
-
60
-
-
84355161447
-
An equilibrium-dependent retroviral mRNA switch regulates translational recoding
-
Houck-Loomis B, et al. (2011) An equilibrium-dependent retroviral mRNA switch regulates translational recoding. Nature 480:561-564.
-
(2011)
Nature
, vol.480
, pp. 561-564
-
-
Houck-Loomis, B.1
-
61
-
-
69049113945
-
Footprinting analysis of BWYV pseudoknot-ribosome complexes
-
Mazauric MH, Leroy JL, Visscher K, Yoshizawa S, Fourmy D (2009) Footprinting analysis of BWYV pseudoknot-ribosome complexes. RNA 15:1775-1786.
-
(2009)
RNA
, vol.15
, pp. 1775-1786
-
-
Mazauric, M.H.1
Leroy, J.L.2
Visscher, K.3
Yoshizawa, S.4
Fourmy, D.5
-
62
-
-
33845258512
-
A novel single amino acid change in small subunit ribosomal protein S5 has profound effects on translational fidelity
-
DOI 10.1261/rna.302006
-
Kirthi N, Roy-Chaudhuri B, Kelley T, CulverGM(2006) A novel single amino acid change in small subunit ribosomal protein S5 has profound effects on translational fidelity. RNA 12:2080-2091. (Pubitemid 44865956)
-
(2006)
RNA
, vol.12
, Issue.12
, pp. 2080-2091
-
-
Kirthi, N.1
Roy-Chaudhuri, B.2
Kelley, T.3
Culver, G.M.4
|