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Volumn 259, Issue 1, 1996, Pages 135-147

Conformation of a non-frameshifting RNA pseudoknot from mouse mammary tumor virus

Author keywords

Frameshift; NMR; Pseudoknot; RNA; Translational control

Indexed keywords

CARBON 13;

EID: 0030011355     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1996.0308     Document Type: Article
Times cited : (50)

References (52)
  • 1
    • 0000265069 scopus 로고
    • Conformational analysis of nucleic acids. Determination of backbone geometry of single-helical RNA and DNA in aqueous solution
    • Altona, C. (1982). Conformational analysis of nucleic acids. Determination of backbone geometry of single-helical RNA and DNA in aqueous solution. Recl. Trav. Chim. Pays Bas, 101, 413-433.
    • (1982) Recl. Trav. Chim. Pays Bas , vol.101 , pp. 413-433
    • Altona, C.1
  • 2
    • 0025036111 scopus 로고
    • Ribosome gymnastics-degree of difficulty 9.5, style 10.0
    • Atkins, J. F., Weiss, R. B. & Gesteland, R. F. (1990). Ribosome gymnastics-degree of difficulty 9.5, style 10.0. Cell, 62, 413-423.
    • (1990) Cell , vol.62 , pp. 413-423
    • Atkins, J.F.1    Weiss, R.B.2    Gesteland, R.F.3
  • 3
    • 5144233105 scopus 로고
    • MLEV-17 based two-dimensional homonuclear magnetization transfer spectroscopy
    • Bax, A. & Davis, D. G. (1985). MLEV-17 based two-dimensional homonuclear magnetization transfer spectroscopy. J. Magn. Reson. 65, 355-360.
    • (1985) J. Magn. Reson. , vol.65 , pp. 355-360
    • Bax, A.1    Davis, D.G.2
  • 4
    • 33644757144 scopus 로고
    • Correlation of proton and nitrogen-15 chemical shifts by multiple quantum NMR
    • Bax, A., Griffey, R. H. & Hawkins, B. L. (1983). Correlation of proton and nitrogen-15 chemical shifts by multiple quantum NMR. J. Magn. Reson. 55, 301-315.
    • (1983) J. Magn. Reson. , vol.55 , pp. 301-315
    • Bax, A.1    Griffey, R.H.2    Hawkins, B.L.3
  • 5
    • 0024411889 scopus 로고
    • Characterization of an efficient coronavirus ribosomal frameshifting signal: Requirement for an RNA pseudoknot
    • Brierley, I., Digard, P. & Inglis, S. C. (1989). Characterization of an efficient coronavirus ribosomal frameshifting signal: requirement for an RNA pseudoknot. Cell, 57, 537-547.
    • (1989) Cell , vol.57 , pp. 537-547
    • Brierley, I.1    Digard, P.2    Inglis, S.C.3
  • 6
    • 0025769767 scopus 로고
    • Mutational analysis of the RNA pseudoknot component of a coronavirus ribosomal frameshifting signal
    • Brierley, I., Rolley, N. J., Jenner, A. J. & Inglis, S. C. (1991). Mutational analysis of the RNA pseudoknot component of a coronavirus ribosomal frameshifting signal. J. Mol. Biol. 220, 889-902.
    • (1991) J. Mol. Biol. , vol.220 , pp. 889-902
    • Brierley, I.1    Rolley, N.J.2    Jenner, A.J.3    Inglis, S.C.4
  • 8
    • 0026598965 scopus 로고
    • An RNA pseudoknot and an optimal heptameric shift site are required for highly efficient ribosomal frameshifting on a retroviral messenger RNA
    • Chamorro, M., Parkin, N. & Varmus, H. E. (1992). An RNA pseudoknot and an optimal heptameric shift site are required for highly efficient ribosomal frameshifting on a retroviral messenger RNA. Proc. Natl Acad. Sci. USA, 89, 713-717.
    • (1992) Proc. Natl Acad. Sci. USA , vol.89 , pp. 713-717
    • Chamorro, M.1    Parkin, N.2    Varmus, H.E.3
  • 10
    • 0028962374 scopus 로고
    • Structural and functional studies of retroviral RNA pseudoknots involved in ribosomal frameshifting: Nucleotides at the junction of the two stems are important for efficient ribosomal frameshifting
    • Chen, X., Chamorro, M., Lee, S. I., Shen, L. X., Hines, J. V., Tinoco, I. & Varmus, H. E. (1995). Structural and functional studies of retroviral RNA pseudoknots involved in ribosomal frameshifting: nucleotides at the junction of the two stems are important for efficient ribosomal frameshifting. EMBO J. 14, 842-852.
    • (1995) EMBO J. , vol.14 , pp. 842-852
    • Chen, X.1    Chamorro, M.2    Lee, S.I.3    Shen, L.X.4    Hines, J.V.5    Tinoco, I.6    Varmus, H.E.7
  • 11
    • 0021956741 scopus 로고
    • Nucleotide sequence of a yeast Ty element: Evidence for an unusual mechanism of gene expression
    • Clare, J. & Farabaugh, P. J. (1985). Nucleotide sequence of a yeast Ty element: evidence for an unusual mechanism of gene expression. Proc. Natl Acad. Sci. USA, 82, 2829-2833.
    • (1985) Proc. Natl Acad. Sci. USA , vol.82 , pp. 2829-2833
    • Clare, J.1    Farabaugh, P.J.2
  • 12
    • 0023643112 scopus 로고
    • Translational frameshifting: Where will it stop?
    • Craigen, W. J. & Caskey, C. T. (1987). Translational frameshifting: where will it stop? Cell, 50, 1-2.
    • (1987) Cell , vol.50 , pp. 1-2
    • Craigen, W.J.1    Caskey, C.T.2
  • 14
    • 0026098002 scopus 로고
    • A-1 ribosomal frameshifting in a double-stranded RNA virus of yeast forms a gag-pol fusion protein
    • Dinman, J. D., Icho, T. & Wickner, R. B. (1991). A-1 ribosomal frameshifting in a double-stranded RNA virus of yeast forms a gag-pol fusion protein. Proc. Natl Acad. Sci. USA, 88, 174-178.
    • (1991) Proc. Natl Acad. Sci. USA , vol.88 , pp. 174-178
    • Dinman, J.D.1    Icho, T.2    Wickner, R.B.3
  • 15
    • 0025303309 scopus 로고
    • The g subunit of DNA polymerase III holoenzyme of E. Coli is produced by ribosomal frameshifting
    • Flower, A. M. & Mchenry, C. S. (1990). The g subunit of DNA polymerase III holoenzyme of E. coli is produced by ribosomal frameshifting. Proc. Natl Acad. Sci. USA, 87, 3713-3717.
    • (1990) Proc. Natl Acad. Sci. USA , vol.87 , pp. 3713-3717
    • Flower, A.M.1    Mchenry, C.S.2
  • 16
    • 0026462393 scopus 로고
    • Translational suppression in retroviral gene expression
    • Hatfield, D. L., Levin, J. G., Rein, A. & Oroszlan, S. (1992). Translational suppression in retroviral gene expression. Advan. Virus Res. 41, 193-239.
    • (1992) Advan. Virus Res. , vol.41 , pp. 193-239
    • Hatfield, D.L.1    Levin, J.G.2    Rein, A.3    Oroszlan, S.4
  • 17
    • 0027722243 scopus 로고
    • An 'elaborated' pseudoknot is required for high frequency frameshifting during translation of HCV 229E polymerase mRNA
    • Herold, J. & Siddell, S. G. (1993). An 'elaborated' pseudoknot is required for high frequency frameshifting during translation of HCV 229E polymerase mRNA. Nucl. Acids Res. 21, 5838-5842.
    • (1993) Nucl. Acids Res. , vol.21 , pp. 5838-5842
    • Herold, J.1    Siddell, S.G.2
  • 18
    • 0000764906 scopus 로고
    • 1H nuclear magnetic resonance assignment procedure for RNA duplexes
    • 1H nuclear magnetic resonance assignment procedure for RNA duplexes. J. Am. Chem. Soc. 113, 4360-4361.
    • (1991) J. Am. Chem. Soc. , vol.113 , pp. 4360-4361
    • Heus, H.A.1    Pardi, A.2
  • 20
    • 48749149745 scopus 로고
    • Solvent suppression in Fourier transform nuclear magnetic resonance
    • Hore, P. J. (1983). Solvent suppression in Fourier transform nuclear magnetic resonance. J. Magn. Reson. 55, 283-300.
    • (1983) J. Magn. Reson. , vol.55 , pp. 283-300
    • Hore, P.J.1
  • 21
    • 0025297912 scopus 로고
    • Translational suppression in gene expression in retroviruses and retrotransposons
    • Jacks, T. (1990). Translational suppression in gene expression in retroviruses and retrotransposons. Curr. Top. Microbiol. Immunol. 157, 93-124.
    • (1990) Curr. Top. Microbiol. Immunol. , vol.157 , pp. 93-124
    • Jacks, T.1
  • 22
    • 0024277965 scopus 로고
    • Signals for ribosomal frameshifting in the Rous sarcoma virus gag-pol region
    • Jacks, T., Madhani, H. D., Masiarz, F. R. & Varmus, H. E. (1988). Signals for ribosomal frameshifting in the Rous sarcoma virus gag-pol region. Cell, 55, 447-458.
    • (1988) Cell , vol.55 , pp. 447-458
    • Jacks, T.1    Madhani, H.D.2    Masiarz, F.R.3    Varmus, H.E.4
  • 23
    • 0037873281 scopus 로고
    • Two efficient ribosomal frameshifting events are required for synthesis of MMTV gag-related polyproteins
    • Jacks, T., Townsley K., Varmus, H. E. & Majors, J. (1987). Two efficient ribosomal frameshifting events are required for synthesis of MMTV gag-related polyproteins. Proc. Natl Acad. Sci. USA, 84, 4298-4302.
    • (1987) Proc. Natl Acad. Sci. USA , vol.84 , pp. 4298-4302
    • Jacks, T.1    Townsley, K.2    Varmus, H.E.3    Majors, J.4
  • 24
    • 0026665386 scopus 로고
    • Hydrolysis of oligoribonucleotides: Influence of sequence and length
    • Kierzek, R. (1992). Hydrolysis of oligoribonucleotides: influence of sequence and length. Nucl. Acids. Res. 20, 5073-5077.
    • (1992) Nucl. Acids. Res. , vol.20 , pp. 5073-5077
    • Kierzek, R.1
  • 25
    • 84915716471 scopus 로고
    • Elucidation of cross relaxation in liquids by two-dimensional NMR spectroscopy
    • Macura, S. & Ernst, R. R. (1980). Elucidation of cross relaxation in liquids by two-dimensional NMR spectroscopy. Mol. Phys. 41, 95-117.
    • (1980) Mol. Phys. , vol.41 , pp. 95-117
    • Macura, S.1    Ernst, R.R.2
  • 26
    • 0001591905 scopus 로고
    • Separation and suppression of coherent transfer effects in two-dimensional NOE and chemical exchange spectroscopy
    • Macura, S., Wüthrich, K. & Ernst, R. R. (1982). Separation and suppression of coherent transfer effects in two-dimensional NOE and chemical exchange spectroscopy. J. Magn. Reson. 46, 269-282.
    • (1982) J. Magn. Reson. , vol.46 , pp. 269-282
    • Macura, S.1    Wüthrich, K.2    Ernst, R.R.3
  • 28
    • 0021933247 scopus 로고
    • A retrovirus-like strategy for expression of a fusion protein encoded by yeast transposon Ty1
    • Mellor, J., Fulton, S. M., Dobson, M. J., Wilson, W., Kingsman, S. M. & Kingsman, A. J. (1985). A retrovirus-like strategy for expression of a fusion protein encoded by yeast transposon Ty1. Nature, 313, 243-246.
    • (1985) Nature , vol.313 , pp. 243-246
    • Mellor, J.1    Fulton, S.M.2    Dobson, M.J.3    Wilson, W.4    Kingsman, S.M.5    Kingsman, A.J.6
  • 29
    • 0023651444 scopus 로고
    • Oligonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates
    • Milligan, J. F., Groebe, D. R., Witherell, G. W. & Uhlenbeck, O. C. (1987). Oligonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates. Nucl. Acids Res. 15, 8783-8798.
    • (1987) Nucl. Acids Res. , vol.15 , pp. 8783-8798
    • Milligan, J.F.1    Groebe, D.R.2    Witherell, G.W.3    Uhlenbeck, O.C.4
  • 30
    • 0026533645 scopus 로고
    • Identification and analysis of the gag-pol ribosomal frameshift site of feline immunodeficiency virus
    • Morikawa, S. & Bishop, D. H. L. (1992). Identification and analysis of the gag-pol ribosomal frameshift site of feline immunodeficiency virus. Virology, 86, 389-397.
    • (1992) Virology , vol.86 , pp. 389-397
    • Morikawa, S.1    Bishop, D.H.L.2
  • 31
    • 33845373878 scopus 로고
    • Multiple-quantum-filtered two-dimensional correlated NMR spectroscopy of proteins
    • Müller, N., Ernst, R. R. & Wüthrich, K. (1986). Multiple-quantum-filtered two-dimensional correlated NMR spectroscopy of proteins. J. Am. Chem. Soc. 108, 6482-6492.
    • (1986) J. Am. Chem. Soc. , vol.108 , pp. 6482-6492
    • Müller, N.1    Ernst, R.R.2    Wüthrich, K.3
  • 32
    • 0025252231 scopus 로고
    • 1H]-NMR spectroscopy: Combined use with isotope labeling for studies of macromolecular conformation and intermolecular interactions
    • 1H]-NMR spectroscopy: combined use with isotope labeling for studies of macromolecular conformation and intermolecular interactions. Quart. Rev. Biophys. 23, 39-96.
    • (1990) Quart. Rev. Biophys. , vol.23 , pp. 39-96
    • Otting, G.1    Wüthrich, K.2
  • 33
    • 33845555707 scopus 로고
    • Exchangeable proton NMR without base-line distorsion, using new strong-pulse sequences
    • Plateau, P. & Gueron, M. (1982). Exchangeable proton NMR without base-line distorsion, using new strong-pulse sequences. J. Am. Chem. Soc. 104, 7310-7311.
    • (1982) J. Am. Chem. Soc. , vol.104 , pp. 7310-7311
    • Plateau, P.1    Gueron, M.2
  • 34
    • 0022423219 scopus 로고
    • A new principle of RNA folding based on pseudoknotting
    • Pleij, C. W. A., Rietveld, K. & Bosch, L. (1985). A new principle of RNA folding based on pseudoknotting. Nucl. Acids Res. 13, 1717-1731.
    • (1985) Nucl. Acids Res. , vol.13 , pp. 1717-1731
    • Pleij, C.W.A.1    Rietveld, K.2    Bosch, L.3
  • 37
    • 0028864098 scopus 로고
    • Synthesis and NMR of RNA with selective isotope enrichment in the base moieties
    • SantaLucia, J., Jr, Shen, L. X., Cai, Z., Lewis, H. & Tinoco, I., Jr (1995). Synthesis and NMR of RNA with selective isotope enrichment in the base moieties. Nucl. Acids Res. 23, 4913-4921.
    • (1995) Nucl. Acids Res. , vol.23 , pp. 4913-4921
    • Santalucia J., Jr.1    Shen, L.X.2    Cai, Z.3    Lewis, H.4    Tinoco I., Jr.5
  • 38
    • 13444269041 scopus 로고
    • Computer-optimized decoupling scheme for wide-band applications and low-level operation
    • Shaka, A. J., Barker, P. B. & Freeman, R. (1985). Computer-optimized decoupling scheme for wide-band applications and low-level operation. J. Magn. Reson. 64, 547-552.
    • (1985) J. Magn. Reson. , vol.64 , pp. 547-552
    • Shaka, A.J.1    Barker, P.B.2    Freeman, R.3
  • 39
    • 0028910590 scopus 로고
    • The structure of an RNA pseudoknot that causes efficient frameshifting in mouse mammary tumor virus
    • Shen, L. X. & Tinoco, I. (1995). The structure of an RNA pseudoknot that causes efficient frameshifting in mouse mammary tumor virus. J. Mol. Biol. 247, 963-978.
    • (1995) J. Mol. Biol. , vol.247 , pp. 963-978
    • Shen, L.X.1    Tinoco, I.2
  • 40
    • 0025168429 scopus 로고
    • The carboxyl-terminal part of the putative Berne virus polymerase is expressed by ribosomal frameshifting and contains sequence motifs which indicate that toro- and coronaviruses are evolutionarily related
    • Snijder, E. J., den Boon, J. A., Bredenbeek, P. J., Hirzinek, M. C., Rikinbrand, R. & Spaan, W. J. M. (1990). The carboxyl-terminal part of the putative Berne virus polymerase is expressed by ribosomal frameshifting and contains sequence motifs which indicate that toro- and coronaviruses are evolutionarily related. Nucl. Acids Res. 18, 4535-4542.
    • (1990) Nucl. Acids Res. , vol.18 , pp. 4535-4542
    • Snijder, E.J.1    Den Boon, J.A.2    Bredenbeek, P.J.3    Hirzinek, M.C.4    Rikinbrand, R.5    Spaan, W.J.M.6
  • 41
    • 0027494569 scopus 로고
    • Ribosomal pausing during translation of an RNA pseudoknot
    • Somogyi, P., Jenner, A. J., Brierley I. & Inglis, S. C. (1993). Ribosomal pausing during translation of an RNA pseudoknot. Mol. Cell. Biol. 13, 6931-6940.
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 6931-6940
    • Somogyi, P.1    Jenner, A.J.2    Brierley, I.3    Inglis, S.C.4
  • 42
    • 0025086640 scopus 로고
    • RNA pseudoknots; translational frameshifting and readthrough on viral RNAs
    • ten Dam, E. B., Pleij, C. W. A. & Bosch, L. (1990). RNA pseudoknots; translational frameshifting and readthrough on viral RNAs. Virus Genes, 4, 121-136.
    • (1990) Virus Genes , vol.4 , pp. 121-136
    • Ten Dam, E.B.1    Pleij, C.W.A.2    Bosch, L.3
  • 43
    • 0028307694 scopus 로고
    • Identification and analysis of the pseudoknot-containing gag-pro ribosomal frameshift signal of simian retrovirus-1
    • ten Dam, E. B., Brierley, I., Inglis, S. & Pleij, C. (1994). Identification and analysis of the pseudoknot-containing gag-pro ribosomal frameshift signal of simian retrovirus-1. Nucl. Acids Res. 22, 2304-2310.
    • (1994) Nucl. Acids Res. , vol.22 , pp. 2304-2310
    • Ten Dam, E.B.1    Brierley, I.2    Inglis, S.3    Pleij, C.4
  • 44
    • 0029281776 scopus 로고
    • Analysis of the role of the pseudoknot component in the SRV-1 gag-pro ribosomal frameshifting signal: Loop lengths and stability of the stem regions
    • ten Dam, E. B., Verlaan, P. W. G. & Pleij, C. W. A. (1995). Analysis of the role of the pseudoknot component in the SRV-1 gag-pro ribosomal frameshifting signal: loop lengths and stability of the stem regions. RNA, 1, 146-154.
    • (1995) RNA , vol.1 , pp. 146-154
    • Ten Dam, E.B.1    Verlaan, P.W.G.2    Pleij, C.W.A.3
  • 45
    • 0025355475 scopus 로고
    • Translational frameshifting generates the g subunit of DNA polymerase III holoenzyme
    • Tsuchihashi, Z. & Kornberg, A. (1990). Translational frameshifting generates the g subunit of DNA polymerase III holoenzyme. Proc. Natl Acad. Sci. USA, 87, 2516-2520.
    • (1990) Proc. Natl Acad. Sci. USA , vol.87 , pp. 2516-2520
    • Tsuchihashi, Z.1    Kornberg, A.2
  • 46
    • 0026733573 scopus 로고
    • Ribosomal movement impeded at a pseudoknot required for frameshifting
    • Tu, C., Tzeng, T.-H. & Bruenn, J. A. (1992). Ribosomal movement impeded at a pseudoknot required for frameshifting. Proc. Natl Acad. Sci. USA, 89, 8636-8640.
    • (1992) Proc. Natl Acad. Sci. USA , vol.89 , pp. 8636-8640
    • Tu, C.1    Tzeng, T.-H.2    Bruenn, J.A.3
  • 48
    • 0026598885 scopus 로고
    • Ribosomal frameshifting requires a pseudoknot in the Saccharomyces cerevisiae double-stranded RNA virus
    • Tzeng, T.-H., Tu, C.-L. & Bruenn, J. A. (1992). Ribosomal frameshifting requires a pseudoknot in the Saccharomyces cerevisiae double-stranded RNA virus. J. Virol. 66, 999-1006.
    • (1992) J. Virol. , vol.66 , pp. 999-1006
    • Tzeng, T.-H.1    Tu, C.-L.2    Bruenn, J.A.3
  • 51
    • 0025748046 scopus 로고
    • Synthesis and purification of large amounts of RNA oligonucleotides
    • Wyatt, J. R., Chastain, M. & Puglisi, J. D. (1991). Synthesis and purification of large amounts of RNA oligonucleotides. BioTechniques, 11, 764-769.
    • (1991) BioTechniques , vol.11 , pp. 764-769
    • Wyatt, J.R.1    Chastain, M.2    Puglisi, J.D.3
  • 52
    • 0025113514 scopus 로고
    • RNA pseudoknots; stability and loop size requirements
    • Wyatt, J. R., Puglisi, J. D. & Tinoco, I., Jr (1990). RNA pseudoknots; stability and loop size requirements. J. Mol. Biol. 214, 455-470.
    • (1990) J. Mol. Biol. , vol.214 , pp. 455-470
    • Wyatt, J.R.1    Puglisi, J.D.2    Tinoco I., Jr.3


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