-
1
-
-
20444441572
-
Ribozyme catalysis: Not different, just worse
-
Doudna, J. A., and Lorsch, J. R. (2005) Ribozyme catalysis: Not different, just worse, Nat. Struct. Mol. Biol. 12, 395-402.
-
(2005)
Nat. Struct. Mol. Biol.
, vol.12
, pp. 395-402
-
-
Doudna, J.A.1
Lorsch, J.R.2
-
2
-
-
1642586299
-
Control of gene expression by a natural metabolite-responsive ribozyme
-
Winkler, W. C., Nahvi, A., Roth, A., Collins, J. A., and Breaker, R. R. (2004) Control of gene expression by a natural metabolite-responsive ribozyme, Nature 428, 281-286.
-
(2004)
Nature
, vol.428
, pp. 281-286
-
-
Winkler, W.C.1
Nahvi, A.2
Roth, A.3
Collins, J.A.4
Breaker, R.R.5
-
3
-
-
0024836211
-
RNA pseudoknots: Structure, detection, and prediction
-
Pleij, C. W. A., and Bosch, L. (1989) RNA pseudoknots: Structure, detection, and prediction, Methods Enzymol 180, 289-303.
-
(1989)
Methods Enzymol
, vol.180
, pp. 289-303
-
-
Pleij, C.W.A.1
Bosch, L.2
-
4
-
-
0029896020
-
Receding: Dynamic reprogramming of translation
-
Gesteland, R. F., and Atkins, J. F. (1996) Receding: Dynamic reprogramming of translation, Annu. Rev. Biochem. 65, 741-768.
-
(1996)
Annu. Rev. Biochem.
, vol.65
, pp. 741-768
-
-
Gesteland, R.F.1
Atkins, J.F.2
-
5
-
-
0034724565
-
Structure, stability, and function of RNA pseudoknots involved in stimulating ribosomal frameshifting
-
Giedroc, D. P., Theimer, C. A., and Nixon, P. L. (2000) Structure, stability, and function of RNA pseudoknots involved in stimulating ribosomal frameshifting, J. Mol. Biol. 298, 167-169.
-
(2000)
J. Mol. Biol.
, vol.298
, pp. 167-169
-
-
Giedroc, D.P.1
Theimer, C.A.2
Nixon, P.L.3
-
6
-
-
0033860774
-
Mutational study reveals that tertiary interactions are conserved in ribosomal frameshifting pseudoknots of two luteoviruses
-
Kim, Y.-G., Maas, S. Wang, S. C., and Rich, A. (2000) Mutational study reveals that tertiary interactions are conserved in ribosomal frameshifting pseudoknots of two luteoviruses, RNA 6, 1157-1165.
-
(2000)
RNA
, vol.6
, pp. 1157-1165
-
-
Kim, Y.-G.1
Maas, S.2
Wang, S.C.3
Rich, A.4
-
7
-
-
0033010932
-
Minor groove RNA triplex in the crystal structure of a ribosomal frameshifting viral pseudoknot
-
Su, L., Chen, L., Egli, M., Berger, J. M., and Rich, A. (1999) Minor groove RNA triplex in the crystal structure of a ribosomal frameshifting viral pseudoknot, Nat. Struct. Biol. 6, 285-292.
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 285-292
-
-
Su, L.1
Chen, L.2
Egli, M.3
Berger, J.M.4
Rich, A.5
-
8
-
-
0033452721
-
Specific mutations in a viral RNA pseudoknot drastically change ribosomal frameshifting efficiency
-
Kim, Y.-G., Su, L., Maas, S., O'Neill, A., and Rich, A. (1999) Specific mutations in a viral RNA pseudoknot drastically change ribosomal frameshifting efficiency, Proc. Natl. Acad. Sci. U.S.A. 96, 14232-14239.
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, pp. 14232-14239
-
-
Kim, Y.-G.1
Su, L.2
Maas, S.3
O'Neill, A.4
Rich, A.5
-
9
-
-
0037735185
-
Structure and function of the ribosomal frameshifting pseudoknot RNA from beet western yellow virus
-
Egli, M., Sarkhel, S., Minasov, G., and Rich, A. (2003) Structure and function of the ribosomal frameshifting pseudoknot RNA from beet western yellow virus, Helv. Chim. Acta 86, 1709-1727.
-
(2003)
Helv. Chim. Acta
, vol.86
, pp. 1709-1727
-
-
Egli, M.1
Sarkhel, S.2
Minasov, G.3
Rich, A.4
-
10
-
-
11844292767
-
mRNA helicase activity of the ribosome
-
Takyar, S., Hickerson, R. P., and Noller, H. F. (2005) mRNA helicase activity of the ribosome, Cell 120, 49-58.
-
(2005)
Cell
, vol.120
, pp. 49-58
-
-
Takyar, S.1
Hickerson, R.P.2
Noller, H.F.3
-
11
-
-
4644308292
-
Efficient stimulation of site-specific ribosome frameshifting by antisense oligonucleotides
-
Howard, M. T., Gesteland, R. F., and Atkins, J. F. (2004) Efficient stimulation of site-specific ribosome frameshifting by antisense oligonucleotides, RNA 10, 1653-1661.
-
(2004)
RNA
, vol.10
, pp. 1653-1661
-
-
Howard, M.T.1
Gesteland, R.F.2
Atkins, J.F.3
-
12
-
-
0027879008
-
Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants
-
Kabsch, W. (1993) Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants, J. Appl. Crystallogr. 26, 795-800.
-
(1993)
J. Appl. Crystallogr.
, vol.26
, pp. 795-800
-
-
Kabsch, W.1
-
13
-
-
0000560808
-
MOLREP: An automated program for molecular replacement
-
Vagin, A., and Teplyakov, A. (1997) MOLREP: An automated program for molecular replacement, J. Appl. Crystallogr. 30, 1022-1025.
-
(1997)
J. Appl. Crystallogr.
, vol.30
, pp. 1022-1025
-
-
Vagin, A.1
Teplyakov, A.2
-
14
-
-
3543012707
-
Crystallography and NMR System: A new software suite for macromolecular structure determination
-
Brünger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren G. L. (1998) Crystallography and NMR System: A new software suite for macromolecular structure determination, Acta Crystallogr., Sect. D: Biol. Crystallogr. 54, 905-921.
-
(1998)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.54
, pp. 905-921
-
-
Brünger, A.T.1
Adams, P.D.2
Clore, G.M.3
Delano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
Read, R.J.11
Rice, L.M.12
Simonson, T.13
Warren, G.L.14
-
15
-
-
0004198012
-
-
Université Aix-Marseille II, Marseille, France
-
Cambillau, C., and Roussel, A. (1997) TURBO FRODO, version OpenGL.l, Université Aix-Marseille II, Marseille, France.
-
(1997)
TURBO FRODO, Version OpenGL.l
-
-
Cambillau, C.1
Roussel, A.2
-
16
-
-
0030880598
-
SHELXL: High-resolution refinement
-
Sheldrick, G. M., and Schneider, T. R. (1997) SHELXL: High-resolution refinement, Methods Enzymol. 277, 319-343.
-
(1997)
Methods Enzymol.
, vol.277
, pp. 319-343
-
-
Sheldrick, G.M.1
Schneider, T.R.2
-
17
-
-
0026597444
-
Free R value: A novel statistical quantity for assessing the accuracy of crystal structures
-
Brünger, A. T. (1992) Free R value: A novel statistical quantity for assessing the accuracy of crystal structures, Nature 355, 472-475.
-
(1992)
Nature
, vol.355
, pp. 472-475
-
-
Brünger, A.T.1
-
18
-
-
0037007108
-
Metal ions and flexibility in a viral RNA pseudoknot at atomic resolution
-
Egli, M., Minasov, G., Su, L., and Rich, A. (2002) Metal ions and flexibility in a viral RNA pseudoknot at atomic resolution, Proc. Natl. Acad. Sci U.S.A. 99, 4302-4307.
-
(2002)
Proc. Natl. Acad. Sci U.S.A.
, vol.99
, pp. 4302-4307
-
-
Egli, M.1
Minasov, G.2
Su, L.3
Rich, A.4
-
19
-
-
0031406029
-
Folding of an mRNA pseudoknot required for stop codon readthrough: Effects of mono- and divalent ions on stability
-
Gluick, T. C., Wills, N. M., Gesteland, R. F., and Draper, D. E. (1997) Folding of an mRNA pseudoknot required for stop codon readthrough: Effects of mono- and divalent ions on stability, Biochemistry 36, 16173-16186.
-
(1997)
Biochemistry
, vol.36
, pp. 16173-16186
-
-
Gluick, T.C.1
Wills, N.M.2
Gesteland, R.F.3
Draper, D.E.4
-
20
-
-
0034681297
-
Energetics of a strongly pH dependent RNA tertiary structure in a frameshifting pseudoknot
-
Nixon, P. L., and Giedroc, D. P. (2000) Energetics of a strongly pH dependent RNA tertiary structure in a frameshifting pseudoknot, J. Mol. Biol. 296, 659-671.
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 659-671
-
-
Nixon, P.L.1
Giedroc, D.P.2
-
21
-
-
0041866679
-
Water-nucleobase "stacking" H-π and lone pair-π interactions in the atomic resolution crystal structure of an RNA pseudoknot
-
Sarkhel, S., Rich, A, and Egli, M. (2003) Water-nucleobase "stacking" H-π and lone pair-π interactions in the atomic resolution crystal structure of an RNA pseudoknot, J. Am. Chem. Soc. 125, 8998-8999.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 8998-8999
-
-
Sarkhel, S.1
Rich, A.2
Egli, M.3
-
22
-
-
0035958587
-
The path of messenger RNA through the ribosome
-
Yusupova, G. Z., Yusupov, M. M., Cate, J. H. D., and Noller, H. F. (2001) The path of messenger RNA through the ribosome, Cell 106, 233-241.
-
(2001)
Cell
, vol.106
, pp. 233-241
-
-
Yusupova, G.Z.1
Yusupov, M.M.2
Cate, J.H.D.3
Noller, H.F.4
-
23
-
-
0034699518
-
Structure of the 3OS ribosomal subunit
-
Wimberly, B. T., Brodersen, D. E., Clemons, W. M., Jr., Morgan-Warren, R. J., Carter, A. P., Vonrhein, C., Hartsch, T., and Ramakrishnan, V. (2000) Structure of the 3OS ribosomal subunit, Nature 407, 327-339.
-
(2000)
Nature
, vol.407
, pp. 327-339
-
-
Wimberly, B.T.1
Brodersen, D.E.2
Clemons Jr., W.M.3
Morgan-Warren, R.J.4
Carter, A.P.5
Vonrhein, C.6
Hartsch, T.7
Ramakrishnan, V.8
-
24
-
-
0042307441
-
X-ray crystal structures of the WT and a hyper-accurate ribosome from Escherichia coli
-
Vila-Sanjurjo, A., Ridgeway, W. K., Seymaner, V., Zhang, W., Santoso, S., Yu, K., and Doudna Cate, J. H. (2003) X-ray crystal structures of the WT and a hyper-accurate ribosome from Escherichia coli, Proc. Natl. Acad. Sci. U.S.A. 100, 8682-8687.
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 8682-8687
-
-
Vila-Sanjurjo, A.1
Ridgeway, W.K.2
Seymaner, V.3
Zhang, W.4
Santoso, S.5
Yu, K.6
Doudna Cate, J.H.7
-
25
-
-
0024766985
-
E. coli ribosomes re-phase on retroviral frameshift signals at rates ranging from 2 to 50%
-
Weiss, R. B., Dunn, D. M., Shuh, M., Atkins, J. F., and Gesteland, R. F. (1989) E. coli ribosomes re-phase on retroviral frameshift signals at rates ranging from 2 to 50%, New Biol. 1, 159-169.
-
(1989)
New Biol.
, vol.1
, pp. 159-169
-
-
Weiss, R.B.1
Dunn, D.M.2
Shuh, M.3
Atkins, J.F.4
Gesteland, R.F.5
-
26
-
-
0000732609
-
GRASP: Graphical representation and analysis of surface properties
-
Nicholls, A., Bharadwaj, R., and Honig, B. (1993) GRASP: Graphical representation and analysis of surface properties, Biophys. J. 64, 166-170.
-
(1993)
Biophys. J.
, vol.64
, pp. 166-170
-
-
Nicholls, A.1
Bharadwaj, R.2
Honig, B.3
|