Development of a method to measure DNA methylation levels by using methyl CpG-binding protein and luciferase-fused zinc finger protein

Analytical Chemistry

Volumn 84, Issue 19, 2012, Pages 8259-8264

  Hiraoka, Daisuke ^a   Yoshida, Wataru ^a   Abe, Koichi ^a   Wakeda, Hironobu ^b   Hata, Kenichiro ^c   Ikebukuro, Kazunori ^a  

^a TOKYO UNIVERSITY OF AGRICULTURE AND TECHNOLOGY   (Japan)

^b UNIVERSITY OF MIYAZAKI   (Japan)

^c NATIONAL RESEARCH INSTITUTE FOR CHILD HEALTH AND DEVELOPMENT   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ANDROGEN RECEPTORS; CANCER DIAGNOSIS; DETECTION SYSTEM; DNA METHYLATION; DNA PRECIPITATION; EARLY DIAGNOSIS; GENOMIC REGIONS; PCR AMPLIFICATION; PCR PRODUCTS; SENSITIVE METHOD; TRANSCRIPTIONAL REGULATION; WHOLE BLOOD; ZINC FINGER; ZINC FINGER PROTEIN;

ALKYLATION; BELT DRIVES; DISEASES; GENES; PROTEINS; ZINC;

POLYMERASE CHAIN REACTION;

DNA; DNA BINDING PROTEIN; GLUTATHIONE; GLUTATHIONE TRANSFERASE; LUCIFERASE; MBD1 PROTEIN, HUMAN; TRANSCRIPTION FACTOR; ZINC FINGER PROTEIN;

ARTICLE; CHEMISTRY; DNA METHYLATION; FEMALE; GENETICS; HUMAN; MALE; METABOLISM; POLYMERASE CHAIN REACTION; TUMOR CELL CULTURE;

DNA; DNA METHYLATION; DNA-BINDING PROTEINS; FEMALE; GLUTATHIONE; GLUTATHIONE TRANSFERASE; HUMANS; LUCIFERASES; MALE; POLYMERASE CHAIN REACTION; TRANSCRIPTION FACTORS; TUMOR CELLS, CULTURED; ZINC FINGERS;

EID: 84867036557     PISSN: 00032700     EISSN: 15206882     Source Type: Journal    
DOI: 10.1021/ac3015774     Document Type: Article

References (33)

1. Bestor, T. H. Hum. Mol. Genet. 2000, 9, 2395-402
2. Chen, R. Z.; Pettersson, U.; Beard, C.; Jackson-Grusby, L.; Jaenisch, R. Nature 1998, 395, 89-93
3. Li, E.; Bestor, T. H.; Jaenisch, R. Cell 1992, 69, 915-926
4. Costello, J. F.; Fruhwald, M. C.; Smiraglia, D. J.; Rush, L. J.; Robertson, G. P.; Gao, X.; Wright, F. A.; Feramisco, J. D.; Peltomaki, P.; Lang, J. C.; Schuller, D. E.; Yu, L.; Bloomfield, C. D.; Caligiuri, M. A.; Yates, A.; Nishikawa, R.; Su Huang, H.; Petrelli, N. J.; Zhang, X.; O'Dorisio, M. S.; Held, W. A.; Cavenee, W. K.; Plass, C. Nat. Genet. 2000, 24, 132-138
5. Baylin, S. B.; Ohm, J. E. Cancer 2006, 6, 107-116
6. Simon, R. J. Clin. Oncol. 2005, 23, 7332-7341
7. Shapiro, R.; Braverman, B.; Louis, J. B.; Servis, R. E. J. Biol. Chem. 1973, 248, 4060-4064
8. Grunau, C.; Clark, S. J.; Rosenthal, A. Nucleic Acids Res. 2001, 29, E65-5
9. van der Ploeg, L. H.; Flavell, R. A. Cell 1980, 19, 947-958
10. Zilberman, D.; Henikoff, S. Development 2007, 134, 3959-3965
11. Inomata, K.; Ohki, I.; Tochio, H.; Fujiwara, K.; Hiroaki, H.; Shirakawa, M. Biochemistry 2008, 47, 3266-3271
12. Gebhard, C.; Schwarzfischer, L.; Pham, T. H.; Andreesen, R.; Mackensen, A.; Rehli, M. Nucleic Acids Res. 2006, 34, e82
13. Zou, H.; Harrington, J.; Rego, R. L.; Ahlquist, D. A. Clin. Chem. 2007, 53, 1646-1651
14. Luo, J.; Zheng, W.; Wang, Y.; Wu, Z.; Bai, Y.; Lu, Z. Anal. Biochem. 2009, 387, 143-149
15. Stains, C. I.; Furman, J. L.; Segal, D. J.; Ghosh, I. J. Am. Chem. Soc. 2006, 128, 9761-9765
16. Badran, A. H.; Furman, J. L.; Ma, A. S.; Comi, T. J.; Porter, J. R.; Ghosh, I. Anal. Chem. 2011, 83, 7151-7157
17. Pabo, C. O.; Peisach, E.; Grant, R. A. Annu. Rev. Biochem. 2001, 70, 313-340
18. Fujita, N.; Shimotake, N.; Ohki, I.; Chiba, T.; Saya, H.; Shirakawa, M.; Nakao, M. Mol. Cell. Biol. 2000, 20, 5107-5118
19. Abe, K.; Kumagai, T.; Takahashi, C.; Kezuka, A.; Murakami, Y.; Osawa, Y.; Motoki, H.; Matsuo, T.; Horiuchi, M.; Sode, K.; Igimi, S.; Ikebukuro, K. Anal. Chem. DOI: 10.1021/ac3018845.
20. Kumaki, Y.; Oda, M.; Okano, M. Nucleic Acids Res. 2008, 36, W170-175
21. Kinoshita, H.; Shi, Y.; Sandefur, C.; Meisner, L. F.; Chang, C.; Choon, A.; Reznikoff, C. R.; Bova, G. S.; Friedl, A.; Jarrard, D. F. Cancer Res. 2000, 60, 3623-3630
22. Fraga, M. F.; Ballestar, E.; Montoya, G.; Taysavang, P.; Wade, P. A.; Esteller, M. Nucleic Acids Res. 2003, 31, 1765-1774
23. Oda, M.; Azuma, T. Mol. Immunol. 2000, 37, 1111-1122
24. Folkman, J. N. Engl. J. Med. 1971, 285, 1182-1186
25. Osawa, Y.; Ikebukuro, K.; Motoki, H.; Matsuo, T.; Horiuchi, M.; Sode, K. Nucleic Acids Res. 2008, 36, e68
26. Clement, G.; Braunschweig, R.; Pasquier, N.; Bosman, F. T.; Benhattar, J. J. Pathol. 2006, 208, 100-107
27. Bonazzi, V. F.; Nancarrow, D. J.; Stark, M. S.; Moser, R. J.; Boyle, G. M.; Aoude, L. G.; Schmidt, C.; Hayward, N. K. PloS One 2011, 6, e26121
28. Miotto, E.; Sabbioni, S.; Veronese, A.; Calin, G. A.; Gullini, S.; Liboni, A.; Gramantieri, L.; Bolondi, L.; Ferrazzi, E.; Gafa, R.; Lanza, G.; Negrini, M. Cancer Res. 2004, 64, 8156-8159
29. Segal, D. J.; Dreier, B.; Beerli, R. R.; Barbas, C. F., III. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 2758-2763
30. Dreier, B.; Segal, D. J.; Barbas, C. F., III. J. Mol. Biol. 2000, 303, 489-502
31. Dreier, B.; Beerli, R. R.; Segal, D. J.; Flippin, J. D.; Barbas, C. F., III. J. Biol. Chem. 2001, 276, 29466-29478
32. Dreier, B.; Fuller, R. P.; Segal, D. J.; Lund, C. V.; Blancafort, P.; Huber, A.; Koksch, B.; Barbas, C. F., III. J. Biol. Chem. 2005, 280, 35588-35597
33. Mandell, J. G.; Barbas, C. F., III. Nucleic Acids Res. 2006, 34, W516-523