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Volumn 8, Issue 9, 2012, Pages

Enrichment of HP1a on Drosophila Chromosome 4 Genes Creates an Alternate Chromatin Structure Critical for Regulation in this Heterochromatic Domain

Author keywords

[No Author keywords available]

Indexed keywords

CELL PROTEIN; CHROMOSOME PROTEIN; HETEROCHROMATIN PROTEIN 1; HETEROCHROMATIN PROTEIN 1A; HISTONE H3; PROTEIN EGG; PROTEIN GAGA; PROTEIN POF; PROTEIN TRL; RNA POLYMERASE II; UNCLASSIFIED DRUG;

EID: 84866914615     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1002954     Document Type: Article
Times cited : (40)

References (71)
  • 1
    • 0016221697 scopus 로고
    • Chromatin structure: a repeating unit of histones and DNA
    • Kornberg RD, (1974) Chromatin structure: a repeating unit of histones and DNA. Science 184: 868-871.
    • (1974) Science , vol.184 , pp. 868-871
    • Kornberg, R.D.1
  • 2
    • 1842411320 scopus 로고    scopus 로고
    • Crystal structure of the nucleosome core particle at 2.8 A resolution
    • Luger K, Mader AW, Richmond RK, Sargent DF, Richmond TJ, (1997) Crystal structure of the nucleosome core particle at 2.8 A resolution. Nature 389: 251-260.
    • (1997) Nature , vol.389 , pp. 251-260
    • Luger, K.1    Mader, A.W.2    Richmond, R.K.3    Sargent, D.F.4    Richmond, T.J.5
  • 3
    • 79952534189 scopus 로고    scopus 로고
    • Regulation of chromatin by histone modifications
    • Bannister AJ, Kouzarides T, (2011) Regulation of chromatin by histone modifications. Cell Res 21: 381-395.
    • (2011) Cell Res , vol.21 , pp. 381-395
    • Bannister, A.J.1    Kouzarides, T.2
  • 4
    • 78751613557 scopus 로고    scopus 로고
    • Evolution of a distinct genomic domain in Drosophila: comparative analysis of the dot chromosome in Drosophila melanogaster and Drosophila virilis
    • Leung W, Shaffer CD, Cordonnier T, Wong J, Itano MS, et al. (2010) Evolution of a distinct genomic domain in Drosophila: comparative analysis of the dot chromosome in Drosophila melanogaster and Drosophila virilis. Genetics 185: 1519-1534.
    • (2010) Genetics , vol.185 , pp. 1519-1534
    • Leung, W.1    Shaffer, C.D.2    Cordonnier, T.3    Wong, J.4    Itano, M.S.5
  • 5
    • 0027753722 scopus 로고
    • Analysis of Drosophila chromosome 4 using pulsed field gel electrophoresis
    • Locke J, McDermid HE, (1993) Analysis of Drosophila chromosome 4 using pulsed field gel electrophoresis. Chromosoma 102: 718-723.
    • (1993) Chromosoma , vol.102 , pp. 718-723
    • Locke, J.1    McDermid, H.E.2
  • 6
    • 0013940910 scopus 로고
    • In vitro study of the DNA replication patterns of somatic chromosomes of Drosophila melanogaster
    • Barigozzi C, Dolfini S, Fraccaro M, Raimondi GR, Tiepolo L, (1966) In vitro study of the DNA replication patterns of somatic chromosomes of Drosophila melanogaster. Exp Cell Res 43: 231-234.
    • (1966) Exp Cell Res , vol.43 , pp. 231-234
    • Barigozzi, C.1    Dolfini, S.2    Fraccaro, M.3    Raimondi, G.R.4    Tiepolo, L.5
  • 7
    • 77952296352 scopus 로고    scopus 로고
    • Recombination yet inefficient selection along the Drosophila melanogaster subgroup's fourth chromosome
    • Arguello JR, Zhang Y, Kado T, Fan C, Zhao R, et al. (2010) Recombination yet inefficient selection along the Drosophila melanogaster subgroup's fourth chromosome. Mol Biol Evol 27: 848-861.
    • (2010) Mol Biol Evol , vol.27 , pp. 848-861
    • Arguello, J.R.1    Zhang, Y.2    Kado, T.3    Fan, C.4    Zhao, R.5
  • 8
    • 0000475318 scopus 로고
    • The mutants and linkage data of chromosome four of Drosophila melanogaster
    • Bridges CB, (1935) The mutants and linkage data of chromosome four of Drosophila melanogaster. Biol Zh 4: 401-420.
    • (1935) Biol Zh , vol.4 , pp. 401-420
    • Bridges, C.B.1
  • 9
    • 40649110076 scopus 로고    scopus 로고
    • A role for RNAi in heterochromatin formation in Drosophila
    • Riddle NC, Elgin SC, (2008) A role for RNAi in heterochromatin formation in Drosophila. Curr Top Microbiol Immunol 320: 185-209.
    • (2008) Curr Top Microbiol Immunol , vol.320 , pp. 185-209
    • Riddle, N.C.1    Elgin, S.C.2
  • 10
    • 4444283219 scopus 로고    scopus 로고
    • cis-Acting determinants of heterochromatin formation on Drosophila melanogaster chromosome four
    • Sun FL, Haynes K, Simpson CL, Lee SD, Collins L, et al. (2004) cis-Acting determinants of heterochromatin formation on Drosophila melanogaster chromosome four. Mol Cell Biol 24: 8210-8220.
    • (2004) Mol Cell Biol , vol.24 , pp. 8210-8220
    • Sun, F.L.1    Haynes, K.2    Simpson, C.L.3    Lee, S.D.4    Collins, L.5
  • 11
    • 0029066360 scopus 로고
    • Position effect variegation in Drosophila is associated with an altered chromatin structure
    • Wallrath LL, Elgin SC, (1995) Position effect variegation in Drosophila is associated with an altered chromatin structure. Genes Dev 9: 1263-1277.
    • (1995) Genes Dev , vol.9 , pp. 1263-1277
    • Wallrath, L.L.1    Elgin, S.C.2
  • 12
    • 0024445456 scopus 로고
    • Distribution patterns of HP1, a heterochromatin-associated nonhistone chromosomal protein of Drosophila
    • James TC, Eissenberg JC, Craig C, Dietrich V, Hobson A, et al. (1989) Distribution patterns of HP1, a heterochromatin-associated nonhistone chromosomal protein of Drosophila. Eur J Cell Biol 50: 170-180.
    • (1989) Eur J Cell Biol , vol.50 , pp. 170-180
    • James, T.C.1    Eissenberg, J.C.2    Craig, C.3    Dietrich, V.4    Hobson, A.5
  • 13
    • 0036499971 scopus 로고    scopus 로고
    • Central role of Drosophila SU(VAR)3-9 in histone H3-K9 methylation and heterochromatic gene silencing
    • Schotta G, Ebert A, Krauss V, Fischer A, Hoffmann J, et al. (2002) Central role of Drosophila SU(VAR)3-9 in histone H3-K9 methylation and heterochromatic gene silencing. Embo J 21: 1121-1131.
    • (2002) Embo J , vol.21 , pp. 1121-1131
    • Schotta, G.1    Ebert, A.2    Krauss, V.3    Fischer, A.4    Hoffmann, J.5
  • 14
    • 79953060951 scopus 로고    scopus 로고
    • Comprehensive analysis of the chromatin landscape in Drosophila melanogaster
    • Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, et al. (2011) Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature 471: 480-485.
    • (2011) Nature , vol.471 , pp. 480-485
    • Kharchenko, P.V.1    Alekseyenko, A.A.2    Schwartz, Y.B.3    Minoda, A.4    Riddle, N.C.5
  • 15
    • 79551575925 scopus 로고    scopus 로고
    • Plasticity in patterns of histone modifications and chromosomal proteins in Drosophila heterochromatin
    • Riddle NC, Minoda A, Kharchenko PV, Alekseyenko AA, Schwartz YB, et al. (2011) Plasticity in patterns of histone modifications and chromosomal proteins in Drosophila heterochromatin. Genome Res 21: 147-163.
    • (2011) Genome Res , vol.21 , pp. 147-163
    • Riddle, N.C.1    Minoda, A.2    Kharchenko, P.V.3    Alekseyenko, A.A.4    Schwartz, Y.B.5
  • 17
    • 37349082452 scopus 로고    scopus 로고
    • POF and HP1 bind expressed exons, suggesting a balancing mechanism for gene regulation
    • 10.1371/journal.pgen.0030209
    • Johansson AM, Stenberg P, Pettersson F, Larsson J, (2007) POF and HP1 bind expressed exons, suggesting a balancing mechanism for gene regulation. PLoS Genet 3: e209 doi:10.1371/journal.pgen.0030209.
    • (2007) PLoS Genet , vol.3
    • Johansson, A.M.1    Stenberg, P.2    Pettersson, F.3    Larsson, J.4
  • 18
    • 66649127622 scopus 로고    scopus 로고
    • Buffering of segmental and chromosomal aneuploidies in Drosophila melanogaster
    • 10.1371/journal.pgen.1000465
    • Stenberg P, Lundberg LE, Johansson AM, Ryden P, Svensson MJ, et al. (2009) Buffering of segmental and chromosomal aneuploidies in Drosophila melanogaster. PLoS Genet 5: e1000465 doi:10.1371/journal.pgen.1000465.
    • (2009) PLoS Genet , vol.5
    • Stenberg, P.1    Lundberg, L.E.2    Johansson, A.M.3    Ryden, P.4    Svensson, M.J.5
  • 19
    • 84863992646 scopus 로고    scopus 로고
    • POF Regulates the Expression of Genes on the Fourth Chromosome in Drosophila melanogaster by Binding to Nascent RNA
    • Johansson AM, Stenberg P, Allgardsson A, Larsson J, (2012) POF Regulates the Expression of Genes on the Fourth Chromosome in Drosophila melanogaster by Binding to Nascent RNA. Mol Cell Biol 32: 2121-2134.
    • (2012) Mol Cell Biol , vol.32 , pp. 2121-2134
    • Johansson, A.M.1    Stenberg, P.2    Allgardsson, A.3    Larsson, J.4
  • 20
    • 67650270690 scopus 로고    scopus 로고
    • Multiple SET methyltransferases are required to maintain normal heterochromatin domains in the genome of Drosophila melanogaster
    • Brower-Toland B, Riddle NC, Jiang H, Huisinga KL, Elgin SC, (2009) Multiple SET methyltransferases are required to maintain normal heterochromatin domains in the genome of Drosophila melanogaster. Genetics 181: 1303-1319.
    • (2009) Genetics , vol.181 , pp. 1303-1319
    • Brower-Toland, B.1    Riddle, N.C.2    Jiang, H.3    Huisinga, K.L.4    Elgin, S.C.5
  • 21
    • 34249741603 scopus 로고    scopus 로고
    • Drosophila SETDB1 is required for chromosome 4 silencing
    • 10.1371/journal.pgen.0030076
    • Seum C, Reo E, Peng H, Rauscher FJ 3rd, Spierer P, et al. (2007) Drosophila SETDB1 is required for chromosome 4 silencing. PLoS Genet 3: e76 doi:10.1371/journal.pgen.0030076.
    • (2007) PLoS Genet , vol.3
    • Seum, C.1    Reo, E.2    Peng, H.3    Rauscher III, F.J.4    Spierer, P.5
  • 22
    • 34547887654 scopus 로고    scopus 로고
    • Epigenetic regulation of the Drosophila chromosome 4 by the histone H3K9 methyltransferase dSETDB1
    • Tzeng TY, Lee CH, Chan LW, Shen CK, (2007) Epigenetic regulation of the Drosophila chromosome 4 by the histone H3K9 methyltransferase dSETDB1. Proc Natl Acad Sci U S A 104: 12691-12696.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 12691-12696
    • Tzeng, T.Y.1    Lee, C.H.2    Chan, L.W.3    Shen, C.K.4
  • 23
    • 78650331647 scopus 로고    scopus 로고
    • Identification of functional elements and regulatory circuits by Drosophila modENCODE
    • Roy S, Ernst J, Kharchenko PV, Kheradpour P, Negre N, et al. (2010) Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science 330: 1787-1797.
    • (2010) Science , vol.330 , pp. 1787-1797
    • Roy, S.1    Ernst, J.2    Kharchenko, P.V.3    Kheradpour, P.4    Negre, N.5
  • 24
    • 45149095184 scopus 로고    scopus 로고
    • An investigation of heterochromatin domains on the fourth chromosome of Drosophila melanogaster
    • Riddle NC, Leung W, Haynes KA, Granok H, Wuller J, et al. (2008) An investigation of heterochromatin domains on the fourth chromosome of Drosophila melanogaster. Genetics 178: 1177-1191.
    • (2008) Genetics , vol.178 , pp. 1177-1191
    • Riddle, N.C.1    Leung, W.2    Haynes, K.A.3    Granok, H.4    Wuller, J.5
  • 25
    • 76749164914 scopus 로고    scopus 로고
    • Alternative epigenetic chromatin states of polycomb target genes
    • 10.1371/journal.pgen.1000805
    • Schwartz YB, Kahn TG, Stenberg P, Ohno K, Bourgon R, et al. (2010) Alternative epigenetic chromatin states of polycomb target genes. PLoS Genet 6: e1000805 doi:10.1371/journal.pgen.1000805.
    • (2010) PLoS Genet , vol.6
    • Schwartz, Y.B.1    Kahn, T.G.2    Stenberg, P.3    Ohno, K.4    Bourgon, R.5
  • 26
    • 79952259260 scopus 로고    scopus 로고
    • X chromosome dosage compensation via enhanced transcriptional elongation in Drosophila
    • Larschan E, Bishop EP, Kharchenko PV, Core LJ, Lis JT, et al. (2011) X chromosome dosage compensation via enhanced transcriptional elongation in Drosophila. Nature 471: 115-118.
    • (2011) Nature , vol.471 , pp. 115-118
    • Larschan, E.1    Bishop, E.P.2    Kharchenko, P.V.3    Core, L.J.4    Lis, J.T.5
  • 27
    • 57849109058 scopus 로고    scopus 로고
    • Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
    • Core LJ, Waterfall JJ, Lis JT, (2008) Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science 322: 1845-1848.
    • (2008) Science , vol.322 , pp. 1845-1848
    • Core, L.J.1    Waterfall, J.J.2    Lis, J.T.3
  • 28
    • 33745045172 scopus 로고    scopus 로고
    • Comparison of dot chromosome sequences from D. melanogaster and D. virilis reveals an enrichment of DNA transposon sequences in heterochromatic domains
    • Slawson EE, Shaffer CD, Malone CD, Leung W, Kellmann E, et al. (2006) Comparison of dot chromosome sequences from D. melanogaster and D. virilis reveals an enrichment of DNA transposon sequences in heterochromatic domains. Genome Biol 7: R15.
    • (2006) Genome Biol , vol.7
    • Slawson, E.E.1    Shaffer, C.D.2    Malone, C.D.3    Leung, W.4    Kellmann, E.5
  • 31
    • 36549013619 scopus 로고    scopus 로고
    • RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo
    • Zeitlinger J, Stark A, Kellis M, Hong JW, Nechaev S, et al. (2007) RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo. Nat Genet 39: 1512-1516.
    • (2007) Nat Genet , vol.39 , pp. 1512-1516
    • Zeitlinger, J.1    Stark, A.2    Kellis, M.3    Hong, J.W.4    Nechaev, S.5
  • 32
    • 77649172856 scopus 로고    scopus 로고
    • Expression in aneuploid Drosophila S2 cells
    • 10.1371/journal.pbio.1000320
    • Zhang Y, Malone JH, Powell SK, Periwal V, Spana E, et al. (2010) Expression in aneuploid Drosophila S2 cells. PLoS Biol 8: e1000320 doi:10.1371/journal.pbio.1000320.
    • (2010) PLoS Biol , vol.8
    • Zhang, Y.1    Malone, J.H.2    Powell, S.K.3    Periwal, V.4    Spana, E.5
  • 33
    • 74549132843 scopus 로고    scopus 로고
    • Global analysis of short RNAs reveals widespread promoter-proximal stalling and arrest of Pol II in Drosophila
    • Nechaev S, Fargo DC, dos Santos G, Liu L, Gao Y, et al. (2010) Global analysis of short RNAs reveals widespread promoter-proximal stalling and arrest of Pol II in Drosophila. Science 327: 335-338.
    • (2010) Science , vol.327 , pp. 335-338
    • Nechaev, S.1    Fargo, D.C.2    dos Santos, G.3    Liu, L.4    Gao, Y.5
  • 34
    • 0025219041 scopus 로고
    • The effects of chromosome rearrangements on the expression of heterochromatic genes in chromosome 2L of Drosophila melanogaster
    • Wakimoto BT, Hearn MG, (1990) The effects of chromosome rearrangements on the expression of heterochromatic genes in chromosome 2L of Drosophila melanogaster. Genetics 125: 141-154.
    • (1990) Genetics , vol.125 , pp. 141-154
    • Wakimoto, B.T.1    Hearn, M.G.2
  • 35
    • 73449102588 scopus 로고    scopus 로고
    • Heterochromatin protein 1 (HP1a) positively regulates euchromatic gene expression through RNA transcript association and interaction with hnRNPs in Drosophila
    • 10.1371/journal.pgen.1000670
    • Piacentini L, Fanti L, Negri R, Del Vescovo V, Fatica A, et al. (2009) Heterochromatin protein 1 (HP1a) positively regulates euchromatic gene expression through RNA transcript association and interaction with hnRNPs in Drosophila. PLoS Genet 5: e1000670 doi:10.1371/journal.pgen.1000670.
    • (2009) PLoS Genet , vol.5
    • Piacentini, L.1    Fanti, L.2    Negri, R.3    Del Vescovo, V.4    Fatica, A.5
  • 36
    • 34247551328 scopus 로고    scopus 로고
    • Painting of fourth and chromosome-wide regulation of the 4th chromosome in Drosophila melanogaster
    • Johansson AM, Stenberg P, Bernhardsson C, Larsson J, (2007) Painting of fourth and chromosome-wide regulation of the 4th chromosome in Drosophila melanogaster. Embo J 26: 2307-2316.
    • (2007) Embo J , vol.26 , pp. 2307-2316
    • Johansson, A.M.1    Stenberg, P.2    Bernhardsson, C.3    Larsson, J.4
  • 37
    • 67349217819 scopus 로고    scopus 로고
    • Retrotransposon silencing and telomere integrity in somatic cells of Drosophila depends on the cytosine-5 methyltransferase DNMT2
    • Phalke S, Nickel O, Walluscheck D, Hortig F, Onorati MC, et al. (2009) Retrotransposon silencing and telomere integrity in somatic cells of Drosophila depends on the cytosine-5 methyltransferase DNMT2. Nat Genet 41: 696-702.
    • (2009) Nat Genet , vol.41 , pp. 696-702
    • Phalke, S.1    Nickel, O.2    Walluscheck, D.3    Hortig, F.4    Onorati, M.C.5
  • 38
    • 0033566809 scopus 로고    scopus 로고
    • Heterochromatic silencing of Drosophila heat shock genes acts at the level of promoter potentiation
    • Cryderman DE, Tang H, Bell C, Gilmour DS, Wallrath LL, (1999) Heterochromatic silencing of Drosophila heat shock genes acts at the level of promoter potentiation. Nucleic Acids Res 27: 3364-3370.
    • (1999) Nucleic Acids Res , vol.27 , pp. 3364-3370
    • Cryderman, D.E.1    Tang, H.2    Bell, C.3    Gilmour, D.S.4    Wallrath, L.L.5
  • 39
    • 78650566210 scopus 로고    scopus 로고
    • Pol II waiting in the starting gates: Regulating the transition from transcription initiation into productive elongation
    • Nechaev S, Adelman K, (2011) Pol II waiting in the starting gates: Regulating the transition from transcription initiation into productive elongation. Biochim Biophys Acta 1809: 34-45.
    • (2011) Biochim Biophys Acta , vol.1809 , pp. 34-45
    • Nechaev, S.1    Adelman, K.2
  • 40
    • 79954562232 scopus 로고    scopus 로고
    • Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells
    • Min IM, Waterfall JJ, Core LJ, Munroe RJ, Schimenti J, et al. (2011) Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells. Genes Dev 25: 742-754.
    • (2011) Genes Dev , vol.25 , pp. 742-754
    • Min, I.M.1    Waterfall, J.J.2    Core, L.J.3    Munroe, R.J.4    Schimenti, J.5
  • 41
    • 34250788247 scopus 로고    scopus 로고
    • Loss-of-function alleles of the JIL-1 histone H3S10 kinase enhance position-effect variegation at pericentric sites in Drosophila heterochromatin
    • Bao X, Deng H, Johansen J, Girton J, Johansen KM, (2007) Loss-of-function alleles of the JIL-1 histone H3S10 kinase enhance position-effect variegation at pericentric sites in Drosophila heterochromatin. Genetics 176: 1355-1358.
    • (2007) Genetics , vol.176 , pp. 1355-1358
    • Bao, X.1    Deng, H.2    Johansen, J.3    Girton, J.4    Johansen, K.M.5
  • 42
    • 10044244766 scopus 로고    scopus 로고
    • Su(var) genes regulate the balance between euchromatin and heterochromatin in Drosophila
    • Ebert A, Schotta G, Lein S, Kubicek S, Krauss V, et al. (2004) Su(var) genes regulate the balance between euchromatin and heterochromatin in Drosophila. Genes Dev 18: 2973-2983.
    • (2004) Genes Dev , vol.18 , pp. 2973-2983
    • Ebert, A.1    Schotta, G.2    Lein, S.3    Kubicek, S.4    Krauss, V.5
  • 43
    • 33747861930 scopus 로고    scopus 로고
    • Loss-of-function alleles of the JIL-1 kinase are strong suppressors of position effect variegation of the wm4 allele in Drosophila
    • Lerach S, Zhang W, Bao X, Deng H, Girton J, et al. (2006) Loss-of-function alleles of the JIL-1 kinase are strong suppressors of position effect variegation of the wm4 allele in Drosophila. Genetics 173: 2403-2406.
    • (2006) Genetics , vol.173 , pp. 2403-2406
    • Lerach, S.1    Zhang, W.2    Bao, X.3    Deng, H.4    Girton, J.5
  • 44
    • 32244431871 scopus 로고    scopus 로고
    • The JIL-1 histone H3S10 kinase regulates dimethyl H3K9 modifications and heterochromatic spreading in Drosophila
    • Zhang W, Deng H, Bao X, Lerach S, Girton J, et al. (2006) The JIL-1 histone H3S10 kinase regulates dimethyl H3K9 modifications and heterochromatic spreading in Drosophila. Development 133: 229-235.
    • (2006) Development , vol.133 , pp. 229-235
    • Zhang, W.1    Deng, H.2    Bao, X.3    Lerach, S.4    Girton, J.5
  • 45
    • 79953741268 scopus 로고    scopus 로고
    • Global analysis of the relationship between JIL-1 kinase and transcription
    • 10.1371/journal.pgen.1001327
    • Regnard C, Straub T, Mitterweger A, Dahlsveen IK, Fabian V, et al. (2011) Global analysis of the relationship between JIL-1 kinase and transcription. PLoS Genet 7: e1001327 doi:10.1371/journal.pgen.1001327.
    • (2011) PLoS Genet , vol.7
    • Regnard, C.1    Straub, T.2    Mitterweger, A.3    Dahlsveen, I.K.4    Fabian, V.5
  • 46
    • 35048892516 scopus 로고    scopus 로고
    • Reduced levels of Su(var)3-9 but not Su(var)2-5 (HP1) counteract the effects on chromatin structure and viability in loss-of-function mutants of the JIL-1 histone H3S10 kinase
    • Deng H, Bao X, Zhang W, Girton J, Johansen J, et al. (2007) Reduced levels of Su(var)3-9 but not Su(var)2-5 (HP1) counteract the effects on chromatin structure and viability in loss-of-function mutants of the JIL-1 histone H3S10 kinase. Genetics 177: 79-87.
    • (2007) Genetics , vol.177 , pp. 79-87
    • Deng, H.1    Bao, X.2    Zhang, W.3    Girton, J.4    Johansen, J.5
  • 48
    • 34047231261 scopus 로고    scopus 로고
    • High-resolution mapping reveals links of HP1 with active and inactive chromatin components
    • 10.1371/journal.pgen.0030038
    • de Wit E, Greil F, van Steensel B, (2007) High-resolution mapping reveals links of HP1 with active and inactive chromatin components. PLoS Genet 3: e38 doi:10.1371/journal.pgen.0030038.
    • (2007) PLoS Genet , vol.3
    • de Wit, E.1    Greil, F.2    van Steensel, B.3
  • 49
    • 28444497751 scopus 로고    scopus 로고
    • Sex-specific role of Drosophila melanogaster HP1 in regulating chromatin structure and gene transcription
    • Liu LP, Ni JQ, Shi YD, Oakeley EJ, Sun FL, (2005) Sex-specific role of Drosophila melanogaster HP1 in regulating chromatin structure and gene transcription. Nat Genet 37: 1361-1366.
    • (2005) Nat Genet , vol.37 , pp. 1361-1366
    • Liu, L.P.1    Ni, J.Q.2    Shi, Y.D.3    Oakeley, E.J.4    Sun, F.L.5
  • 50
    • 0034084365 scopus 로고    scopus 로고
    • Heterochromatin protein 1 is required for the normal expression of two heterochromatin genes in Drosophila
    • Lu BY, Emtage PC, Duyf BJ, Hilliker AJ, Eissenberg JC, (2000) Heterochromatin protein 1 is required for the normal expression of two heterochromatin genes in Drosophila. Genetics 155: 699-708.
    • (2000) Genetics , vol.155 , pp. 699-708
    • Lu, B.Y.1    Emtage, P.C.2    Duyf, B.J.3    Hilliker, A.J.4    Eissenberg, J.C.5
  • 51
    • 38949130541 scopus 로고    scopus 로고
    • Molecular landscape of modified histones in Drosophila heterochromatic genes and euchromatin-heterochromatin transition zones
    • 10.1371/journal.pgen.0040016
    • Yasuhara JC, Wakimoto BT, (2008) Molecular landscape of modified histones in Drosophila heterochromatic genes and euchromatin-heterochromatin transition zones. PLoS Genet 4: e16 doi:10.1371/journal.pgen.0040016.
    • (2008) PLoS Genet , vol.4
    • Yasuhara, J.C.1    Wakimoto, B.T.2
  • 52
    • 79952483047 scopus 로고    scopus 로고
    • Heterochromatin protein 1a is required for an open chromatin structure
    • Cryderman DE, Vitalini MW, Wallrath LL, (2011) Heterochromatin protein 1a is required for an open chromatin structure. Transcription 2: 95-99.
    • (2011) Transcription , vol.2 , pp. 95-99
    • Cryderman, D.E.1    Vitalini, M.W.2    Wallrath, L.L.3
  • 53
    • 56849114113 scopus 로고    scopus 로고
    • Heterochromatin protein 1a stimulates histone H3 lysine 36 demethylation by the Drosophila KDM4A demethylase
    • Lin CH, Li B, Swanson S, Zhang Y, Florens L, et al. (2008) Heterochromatin protein 1a stimulates histone H3 lysine 36 demethylation by the Drosophila KDM4A demethylase. Mol Cell 32: 696-706.
    • (2008) Mol Cell , vol.32 , pp. 696-706
    • Lin, C.H.1    Li, B.2    Swanson, S.3    Zhang, Y.4    Florens, L.5
  • 54
    • 34547102488 scopus 로고    scopus 로고
    • Two Saccharomyces cerevisiae JmjC domain proteins demethylate histone H3 Lys36 in transcribed regions to promote elongation
    • Kim T, Buratowski S, (2007) Two Saccharomyces cerevisiae JmjC domain proteins demethylate histone H3 Lys36 in transcribed regions to promote elongation. J Biol Chem 282: 20827-20835.
    • (2007) J Biol Chem , vol.282 , pp. 20827-20835
    • Kim, T.1    Buratowski, S.2
  • 55
    • 3042793615 scopus 로고    scopus 로고
    • Painting of fourth in genus Drosophila suggests autosome-specific gene regulation
    • Larsson J, Svensson MJ, Stenberg P, Makitalo M, (2004) Painting of fourth in genus Drosophila suggests autosome-specific gene regulation. Proc Natl Acad Sci U S A 101: 9728-9733.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 9728-9733
    • Larsson, J.1    Svensson, M.J.2    Stenberg, P.3    Makitalo, M.4
  • 56
    • 0345305758 scopus 로고    scopus 로고
    • Distinct HP1 and Su(var)3-9 complexes bind to sets of developmentally coexpressed genes depending on chromosomal location
    • Greil F, van der Kraan I, Delrow J, Smothers JF, de Wit E, et al. (2003) Distinct HP1 and Su(var)3-9 complexes bind to sets of developmentally coexpressed genes depending on chromosomal location. Genes Dev 17: 2825-2838.
    • (2003) Genes Dev , vol.17 , pp. 2825-2838
    • Greil, F.1    van der Kraan, I.2    Delrow, J.3    Smothers, J.F.4    de Wit, E.5
  • 57
    • 0033959743 scopus 로고    scopus 로고
    • Controlled expression of tagged proteins in Drosophila using a new modular P-element vector system
    • Schotta G, Reuter G, (2000) Controlled expression of tagged proteins in Drosophila using a new modular P-element vector system. Mol Gen Genet 262: 916-920.
    • (2000) Mol Gen Genet , vol.262 , pp. 916-920
    • Schotta, G.1    Reuter, G.2
  • 58
    • 74049135429 scopus 로고    scopus 로고
    • A subset of the histone H3 lysine 9 methyltransferases Suv39h1, G9a, GLP, and SETDB1 participate in a multimeric complex
    • Fritsch L, Robin P, Mathieu JR, Souidi M, Hinaux H, et al. (2010) A subset of the histone H3 lysine 9 methyltransferases Suv39h1, G9a, GLP, and SETDB1 participate in a multimeric complex. Mol Cell 37: 46-56.
    • (2010) Mol Cell , vol.37 , pp. 46-56
    • Fritsch, L.1    Robin, P.2    Mathieu, J.R.3    Souidi, M.4    Hinaux, H.5
  • 59
    • 84862907807 scopus 로고    scopus 로고
    • Drosophila Piwi functions downstream of piRNA production mediating a chromatin-based transposon silencing mechanism in female germ line
    • Wang SH, Elgin SC, (2011) Drosophila Piwi functions downstream of piRNA production mediating a chromatin-based transposon silencing mechanism in female germ line. Proc Natl Acad Sci U S A.
    • (2011) Proc Natl Acad Sci U S A
    • Wang, S.H.1    Elgin, S.C.2
  • 60
    • 80051948751 scopus 로고    scopus 로고
    • Vreteno, a gonad-specific protein, is essential for germline development and primary piRNA biogenesis in Drosophila
    • Zamparini AL, Davis MY, Malone CD, Vieira E, Zavadil J, et al. (2011) Vreteno, a gonad-specific protein, is essential for germline development and primary piRNA biogenesis in Drosophila. Development 138: 4039-4050.
    • (2011) Development , vol.138 , pp. 4039-4050
    • Zamparini, A.L.1    Davis, M.Y.2    Malone, C.D.3    Vieira, E.4    Zavadil, J.5
  • 61
    • 0028691986 scopus 로고
    • Raising large quantities of Drosophila for biochemical experiments
    • Shaffer CD, Wuller JM, Elgin SC, (1994) Raising large quantities of Drosophila for biochemical experiments. Methods Cell Biol 44: 99-108.
    • (1994) Methods Cell Biol , vol.44 , pp. 99-108
    • Shaffer, C.D.1    Wuller, J.M.2    Elgin, S.C.3
  • 62
    • 0026632337 scopus 로고
    • The heterochromatin-associated protein HP-1 is an essential protein in Drosophila with dosage-dependent effects on position-effect variegation
    • Eissenberg JC, Morris GD, Reuter G, Hartnett T, (1992) The heterochromatin-associated protein HP-1 is an essential protein in Drosophila with dosage-dependent effects on position-effect variegation. Genetics 131: 345-352.
    • (1992) Genetics , vol.131 , pp. 345-352
    • Eissenberg, J.C.1    Morris, G.D.2    Reuter, G.3    Hartnett, T.4
  • 64
    • 79551596885 scopus 로고    scopus 로고
    • The transcriptional diversity of 25 Drosophila cell lines
    • Cherbas L, Willingham A, Zhang D, Yang L, Zou Y, et al. (2011) The transcriptional diversity of 25 Drosophila cell lines. Genome Res 21: 301-314.
    • (2011) Genome Res , vol.21 , pp. 301-314
    • Cherbas, L.1    Willingham, A.2    Zhang, D.3    Yang, L.4    Zou, Y.5
  • 65
    • 20444365683 scopus 로고    scopus 로고
    • GOToolBox: functional analysis of gene datasets based on Gene Ontology
    • Martin D, Brun C, Remy E, Mouren P, Thieffry D, et al. (2004) GOToolBox: functional analysis of gene datasets based on Gene Ontology. Genome Biol 5: R101.
    • (2004) Genome Biol , vol.5
    • Martin, D.1    Brun, C.2    Remy, E.3    Mouren, P.4    Thieffry, D.5
  • 66
    • 55749094855 scopus 로고    scopus 로고
    • An integrated software system for analyzing ChIP-chip and ChIP-seq data
    • Ji H, Jiang H, Ma W, Johnson DS, Myers RM, et al. (2008) An integrated software system for analyzing ChIP-chip and ChIP-seq data. Nat Biotechnol 26: 1293-1300.
    • (2008) Nat Biotechnol , vol.26 , pp. 1293-1300
    • Ji, H.1    Jiang, H.2    Ma, W.3    Johnson, D.S.4    Myers, R.M.5
  • 67
    • 77952123055 scopus 로고    scopus 로고
    • Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
    • Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, et al. (2010) Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol 28: 511-515.
    • (2010) Nat Biotechnol , vol.28 , pp. 511-515
    • Trapnell, C.1    Williams, B.A.2    Pertea, G.3    Mortazavi, A.4    Kwan, G.5
  • 68
    • 77955298482 scopus 로고    scopus 로고
    • baySeq: empirical Bayesian methods for identifying differential expression in sequence count data
    • Hardcastle TJ, Kelly KA, (2010) baySeq: empirical Bayesian methods for identifying differential expression in sequence count data. BMC Bioinformatics 11: 422.
    • (2010) BMC Bioinformatics , vol.11 , pp. 422
    • Hardcastle, T.J.1    Kelly, K.A.2
  • 69
    • 75249087100 scopus 로고    scopus 로고
    • edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
    • Robinson MD, McCarthy DJ, Smyth GK, (2010) edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26: 139-140.
    • (2010) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 70
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • Anders S, Huber W, (2010) Differential expression analysis for sequence count data. Genome Biol 11: R106.
    • (2010) Genome Biol , vol.11
    • Anders, S.1    Huber, W.2


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