-
1
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
1464427, 16056220
-
Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen YJ, Chen Z, Dewell SB, Du L, Fierro JM, Gomes XV, Godwin BC, He W, Helgesen S, Ho CH, Ho CH, Irzyk GP, Jando SC, Alenquer ML, Jarvie TP, Jirage KB, Kim JB, Knight JR, Lanza JR, Leamon JH, Lefkowitz SM, Lei M, Li J, Lohman KL, Lu H, Makhijani VB, McDade KE, McKenna MP, Myers EW, Nickerson E, Nobile JR, Plant R, Puc BP, Ronan MT, Roth GT, Sarkis GJ, Simons JF, Simpson JW, Srinivasan M, Tartaro KR, Tomasz A, Vogt KA, Volkmer GA, Wang SH, Wang Y, Weiner MP, Yu P, Begley RF, Rothberg JM. Genome sequencing in microfabricated high-density picolitre reactors. Nature 2005, 437:376-380. 1464427, 16056220.
-
(2005)
Nature
, vol.437
, pp. 376-380
-
-
Margulies, M.1
Egholm, M.2
Altman, W.E.3
Attiya, S.4
Bader, J.S.5
Bemben, L.A.6
Berka, J.7
Braverman, M.S.8
Chen, Y.J.9
Chen, Z.10
Dewell, S.B.11
Du, L.12
Fierro, J.M.13
Gomes, X.V.14
Godwin, B.C.15
He, W.16
Helgesen, S.17
Ho, C.H.18
Ho, C.H.19
Irzyk, G.P.20
Jando, S.C.21
Alenquer, M.L.22
Jarvie, T.P.23
Jirage, K.B.24
Kim, J.B.25
Knight, J.R.26
Lanza, J.R.27
Leamon, J.H.28
Lefkowitz, S.M.29
Lei, M.30
Li, J.31
Lohman, K.L.32
Lu, H.33
Makhijani, V.B.34
McDade, K.E.35
McKenna, M.P.36
Myers, E.W.37
Nickerson, E.38
Nobile, J.R.39
Plant, R.40
Puc, B.P.41
Ronan, M.T.42
Roth, G.T.43
Sarkis, G.J.44
Simons, J.F.45
Simpson, J.W.46
Srinivasan, M.47
Tartaro, K.R.48
Tomasz, A.49
Vogt, K.A.50
Volkmer, G.A.51
Wang, S.H.52
Wang, Y.53
Weiner, M.P.54
Yu, P.55
Begley, R.F.56
Rothberg, J.M.57
more..
-
2
-
-
33750953227
-
Whole-genome re-sequencing
-
10.1016/j.gde.2006.10.009, 17055251
-
Bentley DR. Whole-genome re-sequencing. Curr Opin Genet Dev 2006, 16:545-552. 10.1016/j.gde.2006.10.009, 17055251.
-
(2006)
Curr Opin Genet Dev
, vol.16
, pp. 545-552
-
-
Bentley, D.R.1
-
3
-
-
37749031255
-
Next-generation sequencing transforms today's biology
-
10.1038/nmeth1156, 18165802
-
Schuster SC. Next-generation sequencing transforms today's biology. Nat Methods 2008, 5:16-18. 10.1038/nmeth1156, 18165802.
-
(2008)
Nat Methods
, vol.5
, pp. 16-18
-
-
Schuster, S.C.1
-
4
-
-
39649117755
-
The impact of next-generation sequencing technology on genetics
-
Mardis ER. The impact of next-generation sequencing technology on genetics. Trends Genet 2008, 24:133-141.
-
(2008)
Trends Genet
, vol.24
, pp. 133-141
-
-
Mardis, E.R.1
-
5
-
-
0028789793
-
Serial analysis of gene expression
-
10.1126/science.270.5235.484, 7570003
-
Velculescu VE, Zhang L, Vogelstein B, Kinzler KW. Serial analysis of gene expression. Science 1995, 270:484-487. 10.1126/science.270.5235.484, 7570003.
-
(1995)
Science
, vol.270
, pp. 484-487
-
-
Velculescu, V.E.1
Zhang, L.2
Vogelstein, B.3
Kinzler, K.W.4
-
6
-
-
13244298225
-
Overdispersed logistic regression for SAGE: modelling multiple groups and covariates
-
10.1186/1471-2105-5-144, 524524, 15469612
-
Baggerly KA, Deng L, Morris JS, Aldaz CM. Overdispersed logistic regression for SAGE: modelling multiple groups and covariates. BMC Bioinformatics 2004, 5:144. 10.1186/1471-2105-5-144, 524524, 15469612.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 144
-
-
Baggerly, K.A.1
Deng, L.2
Morris, J.S.3
Aldaz, C.M.4
-
7
-
-
25444469952
-
Identifying differential expression in multiple SAGE libraries: an overdispersed log-linear model approach
-
10.1186/1471-2105-6-165, 1189357, 15987513
-
Lu J, Tomfohr JK, Kepler TB. Identifying differential expression in multiple SAGE libraries: an overdispersed log-linear model approach. BMC Bioinformatics 2005, 6:165. 10.1186/1471-2105-6-165, 1189357, 15987513.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 165
-
-
Lu, J.1
Tomfohr, J.K.2
Kepler, T.B.3
-
8
-
-
41149085992
-
Small-sample estimation of negative binomial dispersion, with applications to SAGE data
-
10.1093/biostatistics/kxm030, 17728317
-
Robinson MD, Smyth GK. Small-sample estimation of negative binomial dispersion, with applications to SAGE data. Biostatistics 2008, 9:321-332. 10.1093/biostatistics/kxm030, 17728317.
-
(2008)
Biostatistics
, vol.9
, pp. 321-332
-
-
Robinson, M.D.1
Smyth, G.K.2
-
9
-
-
36448981743
-
Moderated statistical tests for assessing differences in tag abundance
-
10.1093/bioinformatics/btm453, 17881408
-
Robinson MD, Smyth GK. Moderated statistical tests for assessing differences in tag abundance. Bioinformatics 2007, 23:2881-2887. 10.1093/bioinformatics/btm453, 17881408.
-
(2007)
Bioinformatics
, vol.23
, pp. 2881-2887
-
-
Robinson, M.D.1
Smyth, G.K.2
-
10
-
-
75249095274
-
DEGseq: an R package for identifying differentially expressed genes from RNA-seq data
-
10.1093/bioinformatics/btp612, 19855105
-
Wang L, Feng Z, Wang X, Wang X, Zhang X. DEGseq: an R package for identifying differentially expressed genes from RNA-seq data. Bioinformatics 2010, 26:136-138. 10.1093/bioinformatics/btp612, 19855105.
-
(2010)
Bioinformatics
, vol.26
, pp. 136-138
-
-
Wang, L.1
Feng, Z.2
Wang, X.3
Wang, X.4
Zhang, X.5
-
11
-
-
84866622527
-
Differential expression analysis for sequence count data
-
Anders S, Huber W. Differential expression analysis for sequence count data. Nature Precedings 2010, , http://precedings.nature.com/documents/4282/version/2
-
(2010)
Nature Precedings
-
-
Anders, S.1
Huber, W.2
-
12
-
-
77949481052
-
Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments
-
10.1186/1471-2105-11-94, 2838869, 20167110
-
Bullard JH, Purdom E, Hansen KD, Dudoit S. Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments. BMC Bioinformatics 2010, 11:94. 10.1186/1471-2105-11-94, 2838869, 20167110.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 94
-
-
Bullard, J.H.1
Purdom, E.2
Hansen, K.D.3
Dudoit, S.4
-
13
-
-
84972543992
-
Methods for Approximating Integrals in Statistics with Special Emphasis on Bayesian Integration Problems
-
Evans M, Swartz T. Methods for Approximating Integrals in Statistics with Special Emphasis on Bayesian Integration Problems. Statistical Science 1995, 10(3):254-272.
-
(1995)
Statistical Science
, vol.10
, Issue.3
, pp. 254-272
-
-
Evans, M.1
Swartz, T.2
-
14
-
-
33749995538
-
Quasi-likelihood and psuedo-likelihood are not the same thing
-
Nelder J. Quasi-likelihood and psuedo-likelihood are not the same thing. Journal of Applied Statistics 2000, 27(8):1007-1011.
-
(2000)
Journal of Applied Statistics
, vol.27
, Issue.8
, pp. 1007-1011
-
-
Nelder, J.1
-
15
-
-
4544341015
-
Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
-
10.2202/1544-6115.1027, 16646809
-
Smyth GK. Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Statistical Applications in Genetics and Molecular Biology 2004, 3. 10.2202/1544-6115.1027, 16646809.
-
(2004)
Statistical Applications in Genetics and Molecular Biology
, vol.3
-
-
Smyth, G.K.1
-
17
-
-
77956172395
-
EdgeR: Methods for differential expression in digital gene expression datasets
-
Robinson M. edgeR: Methods for differential expression in digital gene expression datasets. Bioconductor 2009,
-
(2009)
Bioconductor
-
-
Robinson, M.1
-
18
-
-
75249087100
-
EdgeR: a Bioconductor package for differential expression analysis of digital gene expression data
-
10.1093/bioinformatics/btp616, 2796818, 19910308
-
Robinson MD, McCarthy DJ, Smyth GK. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 2010, 26:139-140. 10.1093/bioinformatics/btp616, 2796818, 19910308.
-
(2010)
Bioinformatics
, vol.26
, pp. 139-140
-
-
Robinson, M.D.1
McCarthy, D.J.2
Smyth, G.K.3
-
19
-
-
28744458859
-
Bioconductor: open software development for computational biology and bioinformatics
-
10.1186/gb-2004-5-10-r80, 545600, 15461798
-
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JY, Zhang J. Bioconductor: open software development for computational biology and bioinformatics. Genome Biol 2004, 5:R80. 10.1186/gb-2004-5-10-r80, 545600, 15461798.
-
(2004)
Genome Biol
, vol.5
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
Bolstad, B.4
Dettling, M.5
Dudoit, S.6
Ellis, B.7
Gautier, L.8
Ge, Y.9
Gentry, J.10
Hornik, K.11
Hothorn, T.12
Huber, W.13
Iacus, S.14
Irizarry, R.15
Leisch, F.16
Li, C.17
Maechler, M.18
Rossini, A.J.19
Sawitzki, G.20
Smith, C.21
Smyth, G.22
Tierney, L.23
Yang, J.Y.24
Zhang, J.25
more..
-
20
-
-
0030962307
-
Gene expression profiles in normal and cancer cells
-
10.1126/science.276.5316.1268, 9157888
-
Zhang L, Zhou W, Velculescu VE, Kern SE, Hruban RH, Hamilton SR, Vogelstein B, Kinzler KW. Gene expression profiles in normal and cancer cells. Science 1997, 276:1268-1272. 10.1126/science.276.5316.1268, 9157888.
-
(1997)
Science
, vol.276
, pp. 1268-1272
-
-
Zhang, L.1
Zhou, W.2
Velculescu, V.E.3
Kern, S.E.4
Hruban, R.H.5
Hamilton, S.R.6
Vogelstein, B.7
Kinzler, K.W.8
-
21
-
-
4644286235
-
SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNAs in Arabidopsis
-
10.1101/gad.1231804, 522987, 15466488
-
Peragine A, Yoshikawa M, Wu G, Albrecht HL, Poethig RS. SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNAs in Arabidopsis. Genes Dev 2004, 18:2368-2379. 10.1101/gad.1231804, 522987, 15466488.
-
(2004)
Genes Dev
, vol.18
, pp. 2368-2379
-
-
Peragine, A.1
Yoshikawa, M.2
Wu, G.3
Albrecht, H.L.4
Poethig, R.S.5
-
22
-
-
38549144806
-
The Arabidopsis Information Resource (TAIR): gene structure and function annotation
-
10.1093/nar/gkm965, 2238962, 17986450
-
Swarbreck D, Wilks C, Lamesch P, Berardini TZ, Garcia-Hernandez M, Foerster H, Li D, Meyer T, Muller R, Ploetz L, Radenbaugh A, Singh S, Swing V, Tissier C, Zhang P, Huala E. The Arabidopsis Information Resource (TAIR): gene structure and function annotation. Nucleic Acids Res 2008, 36:D1009-1014. 10.1093/nar/gkm965, 2238962, 17986450.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Swarbreck, D.1
Wilks, C.2
Lamesch, P.3
Berardini, T.Z.4
Garcia-Hernandez, M.5
Foerster, H.6
Li, D.7
Meyer, T.8
Muller, R.9
Ploetz, L.10
Radenbaugh, A.11
Singh, S.12
Swing, V.13
Tissier, C.14
Zhang, P.15
Huala, E.16
-
23
-
-
46249132980
-
PatMaN: rapid alignment of short sequences to large databases
-
10.1093/bioinformatics/btn223, 2718670, 18467344
-
Prüfer K, Stenzel U, Dannemann M, Green RE, Lachmann M, Kelso J. PatMaN: rapid alignment of short sequences to large databases. Bioinformatics 2008, 24:1530-1531. 10.1093/bioinformatics/btn223, 2718670, 18467344.
-
(2008)
Bioinformatics
, vol.24
, pp. 1530-1531
-
-
Prüfer, K.1
Stenzel, U.2
Dannemann, M.3
Green, R.E.4
Lachmann, M.5
Kelso, J.6
-
25
-
-
35748932852
-
-
R Foundation for Statistical Computing, Vienna, Austria, [ISBN 3-900051-07-0], R Development Core Team
-
R Development Core Team R: A Language and Environment for Statistical Computing 2007, R Foundation for Statistical Computing, Vienna, Austria, [ISBN 3-900051-07-0], R Development Core Team., http://www.R-project.org
-
(2007)
R: A Language and Environment for Statistical Computing
-
-
|