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Volumn 12, Issue 1, 2012, Pages

Phylogenomics of the benzoxazinoid biosynthetic pathway of Poaceae: Gene duplications and origin of the B× cluster

Author keywords

Gene cluster; Gene duplication; Neofunctionalization; P450; Plants; Secondary metabolism

Indexed keywords

CHROMOSOME; CLUSTER ANALYSIS; ENZYME ACTIVITY; GENOMICS; MAIZE; METABOLISM; MONOCOTYLEDON; SECONDARY METABOLITE; WHEAT;

EID: 84866631788     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-12-64     Document Type: Article
Times cited : (72)

References (96)
  • 1
    • 79953234390 scopus 로고    scopus 로고
    • A P450-centric view of plant evolution
    • 10.1111/j.1365-313X.2011.04529.x 21443632
    • A P450-centric view of plant evolution. Nelson D, Werck-Reichhart D, Plant J 2011 66 194 211 10.1111/j.1365-313X.2011.04529.x 21443632
    • (2011) Plant J , vol.66 , pp. 194-211
    • Nelson, D.1    Werck-Reichhart, D.2
  • 2
    • 0031738307 scopus 로고    scopus 로고
    • The great diversity of reactions catalyzed by cytochromes P450
    • 10.1016/S0742-8413(98)10026-9 9972447
    • The great diversity of reactions catalyzed by cytochromes P450. Mansuy D, Comp Biochem Physiol C Pharmacol Toxicol Endocrinol 1998 121 5 14 10.1016/S0742-8413(98)10026-9 9972447
    • (1998) Comp Biochem Physiol C Pharmacol Toxicol Endocrinol , vol.121 , pp. 5-14
    • Mansuy, D.1
  • 4
    • 0034014079 scopus 로고    scopus 로고
    • Role of natural benzoxazinones in the survival strategy of plants
    • 10804466
    • Role of natural benzoxazinones in the survival strategy of plants. Sicker D, Frey M, Schulz M, Gierl A, Int Rev Cytol 2000 198 319 346 10804466
    • (2000) Int Rev Cytol , vol.198 , pp. 319-346
    • Sicker, D.1    Frey, M.2    Schulz, M.3    Gierl, A.4
  • 5
    • 85032069874 scopus 로고
    • Hydroxamic acids (4-hydroxy-1,4-benzoxazin-3-ones), defense chemicals in the Gramineae
    • 10.1016/0031-9422(88)80731-3
    • Hydroxamic acids (4-hydroxy-1,4-benzoxazin-3-ones), defense chemicals in the Gramineae. Niemeyer HM, Phytochemistry 1988 27 3349 3358 10.1016/0031-9422(88)80731-3
    • (1988) Phytochemistry , vol.27 , pp. 3349-3358
    • Niemeyer, H.M.1
  • 6
    • 12344337345 scopus 로고    scopus 로고
    • Benzoxazinones in plants: Occurrence, synthetic access, and biological activity
    • Benzoxazinones in plants: occurrence, synthetic access, and biological activity. Sicker D, Schulz M, Stud Nat Prod Chem 2002 27 185 232
    • (2002) Stud Nat Prod Chem , vol.27 , pp. 185-232
    • Sicker, D.1    Schulz, M.2
  • 7
    • 12944251184 scopus 로고
    • Antimicrobial substances in cereals and fodder plants
    • 13445220
    • Antimicrobial substances in cereals and fodder plants. Virtanen AI, Hietala PK, Wahlroos O, Arch Biochem Biophys 1957 69 486 500 13445220
    • (1957) Arch Biochem Biophys , vol.69 , pp. 486-500
    • Virtanen, A.I.1    Hietala, P.K.2    Wahlroos, O.3
  • 9
    • 0028848836 scopus 로고
    • Expression of a cytochrome P450 gene family in maize
    • 10.1007/BF00290138 7823905
    • Expression of a cytochrome P450 gene family in maize. Frey M, Kliem R, Saedler H, Gierl A, Mol Gen Genet 1995 246 100 109 10.1007/BF00290138 7823905
    • (1995) Mol Gen Genet , vol.246 , pp. 100-109
    • Frey, M.1    Kliem, R.2    Saedler, H.3    Gierl, A.4
  • 10
    • 0035544422 scopus 로고    scopus 로고
    • Two glucosyltransferases are involved in detoxification of benzoxazinoids in maize
    • 11851909
    • Two glucosyltransferases are involved in detoxification of benzoxazinoids in maize. von Rad U, Huttl R, Lottspeich F, Gierl A, Frey M, Plant J 2001 28 633 642 11851909
    • (2001) Plant J , vol.28 , pp. 633-642
    • Von Rad, U.1    Huttl, R.2    Lottspeich, F.3    Gierl, A.4    Frey, M.5
  • 13
    • 0036799777 scopus 로고    scopus 로고
    • Induction of HDMBOA-Glc accumulation and DIMBOA-Glc 4-O-methyltransferase by jasmonic acid in poaceous plants
    • 10.1016/S0031-9422(02)00225-X 12359519
    • Induction of HDMBOA-Glc accumulation and DIMBOA-Glc 4-O-methyltransferase by jasmonic acid in poaceous plants. Oikawa A, Ishihara A, Iwamura H, Phytochemistry 2002 61 331 337 10.1016/S0031-9422(02)00225-X 12359519
    • (2002) Phytochemistry , vol.61 , pp. 331-337
    • Oikawa, A.1    Ishihara, A.2    Iwamura, H.3
  • 14
    • 7044227741 scopus 로고    scopus 로고
    • Accumulation of HDMBOA-Glc is induced by biotic stresses prior to the release of MBOA in maize leaves
    • 10.1016/j.phytochem.2004.09.006 15504434
    • Accumulation of HDMBOA-Glc is induced by biotic stresses prior to the release of MBOA in maize leaves. Oikawa A, Ishihara A, Tanaka C, Mori N, Tsuda M, Iwamura H, Phytochemistry 2004 65 2995 3001 10.1016/j.phytochem.2004.09.006 15504434
    • (2004) Phytochemistry , vol.65 , pp. 2995-3001
    • Oikawa, A.1    Ishihara, A.2    Tanaka, C.3    Mori, N.4    Tsuda, M.5    Iwamura, H.6
  • 15
    • 0036236987 scopus 로고    scopus 로고
    • Molecular characterization and chromosomal localization of cytochrome P450 genes involved in the biosynthesis of cyclic hydroxamic acids in hexaploid wheat
    • 10.1007/s00438-002-0653-x 11976964
    • Molecular characterization and chromosomal localization of cytochrome P450 genes involved in the biosynthesis of cyclic hydroxamic acids in hexaploid wheat. Nomura T, Ishihara A, Imaishi H, Endo TR, Ohkawa H, Iwamura H, Mol Genet Genomics 2002 267 210 217 10.1007/s00438-002-0653-x 11976964
    • (2002) Mol Genet Genomics , vol.267 , pp. 210-217
    • Nomura, T.1    Ishihara, A.2    Imaishi, H.3    Endo, T.R.4    Ohkawa, H.5    Iwamura, H.6
  • 16
    • 0344609760 scopus 로고    scopus 로고
    • Cytochrome P450 monooxygenases of DIBOA biosynthesis: Specificity and conservation among grasses
    • 10.1016/S0031-9422(98)00318-5 10385992
    • Cytochrome P450 monooxygenases of DIBOA biosynthesis: specificity and conservation among grasses. Glawischnig E, Grun S, Frey M, Gierl A, Phytochemistry 1999 50 925 930 10.1016/S0031-9422(98)00318-5 10385992
    • (1999) Phytochemistry , vol.50 , pp. 925-930
    • Glawischnig, E.1    Grun, S.2    Frey, M.3    Gierl, A.4
  • 17
    • 20444373386 scopus 로고    scopus 로고
    • Evolution of the indole alkaloid biosynthesis in the genus Hordeum: Distribution of gramine and DIBOA and isolation of the benzoxazinoid biosynthesis genes from Hordeum lechleri
    • 10.1016/j.phytochem.2005.01.024 15907959
    • Evolution of the indole alkaloid biosynthesis in the genus Hordeum: distribution of gramine and DIBOA and isolation of the benzoxazinoid biosynthesis genes from Hordeum lechleri. Grun S, Frey M, Gierl A, Phytochemistry 2005 66 1264 1272 10.1016/j.phytochem.2005.01.024 15907959
    • (2005) Phytochemistry , vol.66 , pp. 1264-1272
    • Grun, S.1    Frey, M.2    Gierl, A.3
  • 18
    • 33947152857 scopus 로고    scopus 로고
    • Molecular characterization of benzoxazinone-deficient mutation in diploid wheat
    • 10.1016/j.phytochem.2007.01.007 17328932
    • Molecular characterization of benzoxazinone-deficient mutation in diploid wheat. Nomura T, Ishihara A, Iwamura H, Endo TR, Phytochemistry 2007 68 1008 1016 10.1016/j.phytochem.2007.01.007 17328932
    • (2007) Phytochemistry , vol.68 , pp. 1008-1016
    • Nomura, T.1    Ishihara, A.2    Iwamura, H.3    Endo, T.R.4
  • 19
    • 28044445146 scopus 로고    scopus 로고
    • Three genomes differentially contribute to the biosynthesis of benzoxazinones in hexaploid wheat
    • 10.1073/pnas.0505156102 16260753
    • Three genomes differentially contribute to the biosynthesis of benzoxazinones in hexaploid wheat. Nomura T, Ishihara A, Yanagita RC, Endo TR, Iwamura H, Proc Natl Acad Sci U S A 2005 102 16490 16495 10.1073/pnas.0505156102 16260753
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 16490-16495
    • Nomura, T.1    Ishihara, A.2    Yanagita, R.C.3    Endo, T.R.4    Iwamura, H.5
  • 20
    • 70350715080 scopus 로고    scopus 로고
    • Benzoxazinoid biosynthesis, a model for evolution of secondary metabolic pathways in plants
    • 10.1016/j.phytochem.2009.05.012 19577780
    • Benzoxazinoid biosynthesis, a model for evolution of secondary metabolic pathways in plants. Frey M, Schullehner K, Dick R, Fiesselmann A, Gierl A, Phytochemistry 2009 70 1645 1651 10.1016/j.phytochem.2009.05.012 19577780
    • (2009) Phytochemistry , vol.70 , pp. 1645-1651
    • Frey, M.1    Schullehner, K.2    Dick, R.3    Fiesselmann, A.4    Gierl, A.5
  • 21
    • 42449155111 scopus 로고    scopus 로고
    • The evolution of gene collectives: How natural selection drives chemical innovation
    • 10.1073/pnas.0709132105 18216259
    • The evolution of gene collectives: How natural selection drives chemical innovation. Fischbach MA, Walsh CT, Clardy J, Proc Natl Acad Sci 2008 105 4601 4608 10.1073/pnas.0709132105 18216259
    • (2008) Proc Natl Acad Sci , vol.105 , pp. 4601-4608
    • Fischbach, M.A.1    Walsh, C.T.2    Clardy, J.3
  • 22
    • 0033866508 scopus 로고    scopus 로고
    • Intron-exon organization and phylogeny in a large superfamily, the paralogous cytochrome P450 genes of Arabidopsis thaliana
    • 10.1089/10445490050021221 10855798
    • Intron-exon organization and phylogeny in a large superfamily, the paralogous cytochrome P450 genes of Arabidopsis thaliana. Paquette SM, Bak S, Feyereisen R, DNA Cell Biol 2000 19 307 317 10.1089/10445490050021221 10855798
    • (2000) DNA Cell Biol , vol.19 , pp. 307-317
    • Paquette, S.M.1    Bak, S.2    Feyereisen, R.3
  • 23
    • 78649445838 scopus 로고    scopus 로고
    • Arthropod CYPomes illustrate the tempo and mode in P450 evolution
    • 10.1016/j.bbapap.2010.06.012 20601227
    • Arthropod CYPomes illustrate the tempo and mode in P450 evolution. Feyereisen R, Biochim Biophys Acta 2011 1814 19 28 10.1016/j.bbapap.2010.06.012 20601227
    • (2011) Biochim Biophys Acta , vol.1814 , pp. 19-28
    • Feyereisen, R.1
  • 25
    • 0346243562 scopus 로고    scopus 로고
    • Organization and evolution of the Cyp2 gene cluster on mouse chromosome 7, and comparison with the syntenic human cluster
    • 10.1289/ehp.6546 14630516
    • Organization and evolution of the Cyp2 gene cluster on mouse chromosome 7, and comparison with the syntenic human cluster. Wang H, Donley KM, Keeney DS, Hoffman SM, Environ Health Perspect 2003 111 1835 1842 10.1289/ehp.6546 14630516
    • (2003) Environ Health Perspect , vol.111 , pp. 1835-1842
    • Wang, H.1    Donley, K.M.2    Keeney, D.S.3    Hoffman, S.M.4
  • 26
    • 77956767424 scopus 로고    scopus 로고
    • Secondary metabolic gene clusters: Evolutionary toolkits for chemical innovation
    • 10.1016/j.tig.2010.07.001 20739089
    • Secondary metabolic gene clusters: evolutionary toolkits for chemical innovation. Osbourn A, Trends Genet 2010 26 449 457 10.1016/j.tig.2010.07.001 20739089
    • (2010) Trends Genet , vol.26 , pp. 449-457
    • Osbourn, A.1
  • 27
    • 79953237139 scopus 로고    scopus 로고
    • From hormones to secondary metabolism: The emergence of metabolic gene clusters in plants
    • 10.1111/j.1365-313X.2011.04503.x 21443624
    • From hormones to secondary metabolism: the emergence of metabolic gene clusters in plants. Chu HY, Wegel E, Osbourn A, Plant J 2011 66 66 79 10.1111/j.1365-313X.2011.04503.x 21443624
    • (2011) Plant J , vol.66 , pp. 66-79
    • Chu, H.Y.1    Wegel, E.2    Osbourn, A.3
  • 28
    • 80054059249 scopus 로고    scopus 로고
    • Genomic clustering of cyanogenic glucoside biosynthetic genes aids their identification in Lotus japonicus and suggests the repeated evolution of this chemical defence pathway
    • 10.1111/j.1365-313X.2011.04685.x 21707799
    • Genomic clustering of cyanogenic glucoside biosynthetic genes aids their identification in Lotus japonicus and suggests the repeated evolution of this chemical defence pathway. Takos AM, Knudsen C, Lai D, Kannangara R, Mikkelsen L, Motawia MS, Olsen CE, Sato S, Tabata S, Jorgensen K, et al. Plant J 2011 68 273 286 10.1111/j.1365-313X.2011.04685.x 21707799
    • (2011) Plant J , vol.68 , pp. 273-286
    • Takos, A.M.1    Knudsen, C.2    Lai, D.3    Kannangara, R.4    Mikkelsen, L.5    Motawia, M.S.6    Olsen, C.E.7    Sato, S.8    Tabata, S.9    Jorgensen, K.10
  • 33
    • 18744382506 scopus 로고    scopus 로고
    • ProtTest: Selection of best-fit models of protein evolution
    • 10.1093/bioinformatics/bti263 15647292
    • ProtTest: selection of best-fit models of protein evolution. Abascal F, Zardoya R, Posada D, Bioinformatics 2005 21 2104 2105 10.1093/bioinformatics/ bti263 15647292
    • (2005) Bioinformatics , vol.21 , pp. 2104-2105
    • Abascal, F.1    Zardoya, R.2    Posada, D.3
  • 34
    • 78650804798 scopus 로고    scopus 로고
    • [ http://www.phylogeny.fr/version2-cgi/index.cgi ]
    • Phylogeny.fr: Home [ http://www.phylogeny.fr/version2-cgi/index.cgi ]
    • Phylogeny.fr: Home
  • 35
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • 10.1093/nar/gkh340 15034147
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput. Edgar RC, Nucleic Acids Res 2004 32 1792 1797 10.1093/nar/gkh340 15034147
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 37
    • 76749119387 scopus 로고    scopus 로고
    • BLAST-EXPLORER helps you building datasets for phylogenetic analysis
    • 10.1186/1471-2148-10-8 20067610
    • BLAST-EXPLORER helps you building datasets for phylogenetic analysis. Dereeper A, Audic S, Claverie JM, Blanc G, BMC Evol Biol 2010 10 8 10.1186/1471-2148-10-8 20067610
    • (2010) BMC Evol Biol , vol.10 , pp. 8
    • Dereeper, A.1    Audic, S.2    Claverie, J.M.3    Blanc, G.4
  • 38
    • 0026691182 scopus 로고
    • The rapid generation of mutation data matrices from protein sequences
    • 1633570
    • The rapid generation of mutation data matrices from protein sequences. Jones DT, Taylor WR, Thornton JM, Comput Appl Biosci 1992 8 275 282 1633570
    • (1992) Comput Appl Biosci , vol.8 , pp. 275-282
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.M.3
  • 39
    • 0028168856 scopus 로고
    • A codon-based model of nucleotide substitution for protein-coding DNA sequences
    • 7968486
    • A codon-based model of nucleotide substitution for protein-coding DNA sequences. Goldman N, Yang Z, Mol Biol Evol 1994 11 725 736 7968486
    • (1994) Mol Biol Evol , vol.11 , pp. 725-736
    • Goldman, N.1    Yang, Z.2
  • 40
    • 0043123111 scopus 로고    scopus 로고
    • RevTrans: Multiple alignment of coding DNA from aligned amino acid sequences
    • 10.1093/nar/gkg609 12824361
    • RevTrans: Multiple alignment of coding DNA from aligned amino acid sequences. Wernersson R, Pedersen AG, Nucleic Acids Res 2003 31 3537 3539 10.1093/nar/gkg609 12824361
    • (2003) Nucleic Acids Res , vol.31 , pp. 3537-3539
    • Wernersson, R.1    Pedersen, A.G.2
  • 41
    • 0031897964 scopus 로고    scopus 로고
    • Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution
    • 10.1093/oxfordjournals.molbev.a025957 9580986
    • Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution. Yang Z, Mol Biol Evol 1998 15 568 573 10.1093/oxfordjournals.molbev.a025957 9580986
    • (1998) Mol Biol Evol , vol.15 , pp. 568-573
    • Yang, Z.1
  • 42
    • 0034097381 scopus 로고    scopus 로고
    • Codon-substitution models for heterogeneous selection pressure at amino acid sites
    • 10790415
    • Codon-substitution models for heterogeneous selection pressure at amino acid sites. Yang Z, Nielsen R, Goldman N, Pedersen AM, Genetics 2000 155 431 449 10790415
    • (2000) Genetics , vol.155 , pp. 431-449
    • Yang, Z.1    Nielsen, R.2    Goldman, N.3    Pedersen, A.M.4
  • 43
    • 0037270595 scopus 로고    scopus 로고
    • Maximum likelihood methods for detecting adaptive evolution after gene duplication
    • 10.1023/A:1022642807731 12836699
    • Maximum likelihood methods for detecting adaptive evolution after gene duplication. Bielawski JP, Yang Z, J Struct Funct Genomics 2003 3 201 212 10.1023/A:1022642807731 12836699
    • (2003) J Struct Funct Genomics , vol.3 , pp. 201-212
    • Bielawski, J.P.1    Yang, Z.2
  • 44
    • 37249085022 scopus 로고    scopus 로고
    • Molecular evolution of glutathione S-transferases in the genus Drosophila
    • 10.1534/genetics.107.075838 18039872
    • Molecular evolution of glutathione S-transferases in the genus Drosophila. Low WY, Ng HL, Morton CJ, Parker MW, Batterham P, Robin C, Genetics 2007 177 1363 1375 10.1534/genetics.107.075838 18039872
    • (2007) Genetics , vol.177 , pp. 1363-1375
    • Low, W.Y.1    Ng, H.L.2    Morton, C.J.3    Parker, M.W.4    Batterham, P.5    Robin, C.6
  • 45
    • 0036270185 scopus 로고    scopus 로고
    • Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages
    • 10.1093/oxfordjournals.molbev.a004148 12032247
    • Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages. Yang Z, Nielsen R, Mol Biol Evol 2002 19 908 917 10.1093/oxfordjournals.molbev.a004148 12032247
    • (2002) Mol Biol Evol , vol.19 , pp. 908-917
    • Yang, Z.1    Nielsen, R.2
  • 46
    • 0023645035 scopus 로고
    • High-resolution crystal structure of cytochrome P450cam
    • 10.1016/0022-2836(87)90190-2 3656428
    • High-resolution crystal structure of cytochrome P450cam. Poulos TL, Finzel BC, Howard AJ, J Mol Biol 1987 195 687 700 10.1016/0022-2836(87)90190-2 3656428
    • (1987) J Mol Biol , vol.195 , pp. 687-700
    • Poulos, T.L.1    Finzel, B.C.2    Howard, A.J.3
  • 47
    • 84877921888 scopus 로고    scopus 로고
    • Jpred 3 [ http://www.compbio.dundee.ac.uk/www-jpred/advanced.html ]
    • Jpred 3
  • 48
    • 84877922373 scopus 로고    scopus 로고
    • PORTER [ http://distill.ucd.ie/porter/ ]
    • PORTER
  • 49
    • 0026542989 scopus 로고
    • Substrate recognition sites in cytochrome P450 family 2 (CYP2) proteins inferred from comparative analyses of amino acid and coding nucleotide sequences
    • 1730627
    • Substrate recognition sites in cytochrome P450 family 2 (CYP2) proteins inferred from comparative analyses of amino acid and coding nucleotide sequences. Gotoh O, J Biol Chem 1992 267 83 90 1730627
    • (1992) J Biol Chem , vol.267 , pp. 83-90
    • Gotoh, O.1
  • 50
    • 33748784344 scopus 로고    scopus 로고
    • A simple statistical method for estimating type-II (cluster-specific) functional divergence of protein sequences
    • 10.1093/molbev/msl056 16864604
    • A simple statistical method for estimating type-II (cluster-specific) functional divergence of protein sequences. Gu X, Mol Biol Evol 2006 23 1937 1945 10.1093/molbev/msl056 16864604
    • (2006) Mol Biol Evol , vol.23 , pp. 1937-1945
    • Gu, X.1
  • 51
    • 0035061686 scopus 로고    scopus 로고
    • Maximum-likelihood approach for gene family evolution under functional divergence
    • 10.1093/oxfordjournals.molbev.a003824 11264396
    • Maximum-likelihood approach for gene family evolution under functional divergence. Gu X, Mol Biol Evol 2001 18 453 464 10.1093/oxfordjournals.molbev. a003824 11264396
    • (2001) Mol Biol Evol , vol.18 , pp. 453-464
    • Gu, X.1
  • 52
    • 0032728408 scopus 로고    scopus 로고
    • Statistical methods for testing functional divergence after gene duplication
    • 10.1093/oxfordjournals.molbev.a026080 10605109
    • Statistical methods for testing functional divergence after gene duplication. Gu X, Mol Biol Evol 1999 16 1664 1674 10.1093/oxfordjournals. molbev.a026080 10605109
    • (1999) Mol Biol Evol , vol.16 , pp. 1664-1674
    • Gu, X.1
  • 53
    • 0036205440 scopus 로고    scopus 로고
    • DIVERGE: Phylogeny-based analysis for functional-structural divergence of a protein family
    • 10.1093/bioinformatics/18.3.500 11934757
    • DIVERGE: phylogeny-based analysis for functional-structural divergence of a protein family. Gu X, Vander Velden K, Bioinformatics 2002 18 500 501 10.1093/bioinformatics/18.3.500 11934757
    • (2002) Bioinformatics , vol.18 , pp. 500-501
    • Gu, X.1    Vander Velden, K.2
  • 55
    • 39449115394 scopus 로고    scopus 로고
    • I-TASSER server for protein 3D structure prediction
    • 10.1186/1471-2105-9-40 18215316
    • I-TASSER server for protein 3D structure prediction. Zhang Y, BMC Bioinformatics 2008 9 40 10.1186/1471-2105-9-40 18215316
    • (2008) BMC Bioinformatics , vol.9 , pp. 40
    • Zhang, Y.1
  • 56
    • 77954065271 scopus 로고    scopus 로고
    • I-TASSER: A unified platform for automated protein structure and function prediction
    • 10.1038/nprot.2010.5 20360767
    • I-TASSER: a unified platform for automated protein structure and function prediction. Roy A, Kucukural A, Zhang Y, Nat Protoc 2010 5 725 738 10.1038/nprot.2010.5 20360767
    • (2010) Nat Protoc , vol.5 , pp. 725-738
    • Roy, A.1    Kucukural, A.2    Zhang, Y.3
  • 57
    • 84877926987 scopus 로고    scopus 로고
    • [ http://autodock.scripps.edu/ ]
    • AutoDock-AutoDock [ http://autodock.scripps.edu/ ]
    • AutoDock - AutoDock
  • 58
    • 70349932423 scopus 로고    scopus 로고
    • AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility
    • 10.1002/jcc.21256 19399780
    • AutoDock4 and AutoDockTools4: automated docking with selective receptor flexibility. Morris GM, Huey R, Lindstrom W, Sanner MF, Belew RK, Goodsell DS, Olson AJ, J Comput Chem 2009 30 2785 2791 10.1002/jcc.21256 19399780
    • (2009) J Comput Chem , vol.30 , pp. 2785-2791
    • Morris, G.M.1    Huey, R.2    Lindstrom, W.3    Sanner, M.F.4    Belew, R.K.5    Goodsell, D.S.6    Olson, A.J.7
  • 59
    • 0033397980 scopus 로고    scopus 로고
    • Python: A programming language for software integration and development
    • 10660911
    • Python: a programming language for software integration and development. Sanner MF, J Mol Graph Model 1999 17 57 61 10660911
    • (1999) J Mol Graph Model , vol.17 , pp. 57-61
    • Sanner, M.F.1
  • 60
    • 33748260755 scopus 로고    scopus 로고
    • SyMAP: A system for discovering and viewing syntenic regions of FPC maps
    • 10.1101/gr.5396706 16951135
    • SyMAP: a system for discovering and viewing syntenic regions of FPC maps. Soderlund C, Nelson W, Shoemaker A, Paterson A, Genome Res 2006 16 1159 1168 10.1101/gr.5396706 16951135
    • (2006) Genome Res , vol.16 , pp. 1159-1168
    • Soderlund, C.1    Nelson, W.2    Shoemaker, A.3    Paterson, A.4
  • 61
    • 78649312312 scopus 로고    scopus 로고
    • Ancestral grass karyotype reconstruction unravels new mechanisms of genome shuffling as a source of plant evolution
    • 10.1101/gr.109744.110 20876790
    • Ancestral grass karyotype reconstruction unravels new mechanisms of genome shuffling as a source of plant evolution. Murat F, Xu JH, Tannier E, Abrouk M, Guilhot N, Pont C, Messing J, Salse J, Genome Res 2010 20 1545 1557 10.1101/gr.109744.110 20876790
    • (2010) Genome Res , vol.20 , pp. 1545-1557
    • Murat, F.1    Xu, J.H.2    Tannier, E.3    Abrouk, M.4    Guilhot, N.5    Pont, C.6    Messing, J.7    Salse, J.8
  • 62
    • 0034844992 scopus 로고    scopus 로고
    • Evolution of benzoxazinone biosynthesis and indole production in maize
    • 10.1007/s004250100594 11556781
    • Evolution of benzoxazinone biosynthesis and indole production in maize. Gierl A, Frey M, Planta 2001 213 493 498 10.1007/s004250100594 11556781
    • (2001) Planta , vol.213 , pp. 493-498
    • Gierl, A.1    Frey, M.2
  • 63
    • 0031873135 scopus 로고    scopus 로고
    • DIBOA in wild Poaceae: Sources of resistance to the Russian wheat aphid (Diuraphis noxia) and the greenbug (Schizaphis graminum)
    • 10.1023/A:1018323121213
    • DIBOA in wild Poaceae: sources of resistance to the Russian wheat aphid (Diuraphis noxia) and the greenbug (Schizaphis graminum). Gianoli E, Niemeyer HM, Euphytica 1998 102 317 321 10.1023/A:1018323121213
    • (1998) Euphytica , vol.102 , pp. 317-321
    • Gianoli, E.1    Niemeyer, H.M.2
  • 70
    • 0030060453 scopus 로고    scopus 로고
    • Structural flexibility and functional versatility of cytochrome P450 and rapid evolution
    • 10.1016/0027-5107(95)00089-5 8657195
    • Structural flexibility and functional versatility of cytochrome P450 and rapid evolution. Negishi M, Iwasaki M, Juvonen RO, Sueyoshi T, Darden TA, Pedersen LG, Mutat Res 1996 350 43 50 10.1016/0027-5107(95)00089-5 8657195
    • (1996) Mutat Res , vol.350 , pp. 43-50
    • Negishi, M.1    Iwasaki, M.2    Juvonen, R.O.3    Sueyoshi, T.4    Darden, T.A.5    Pedersen, L.G.6
  • 71
    • 0025868688 scopus 로고
    • Alteration of high and low spin equilibrium by a single mutation of amino acid 209 in mouse cytochromes P450
    • 1995602
    • Alteration of high and low spin equilibrium by a single mutation of amino acid 209 in mouse cytochromes P450. Iwasaki M, Juvonen R, Lindberg R, Negishi M, J Biol Chem 1991 266 3380 3382 1995602
    • (1991) J Biol Chem , vol.266 , pp. 3380-3382
    • Iwasaki, M.1    Juvonen, R.2    Lindberg, R.3    Negishi, M.4
  • 72
    • 0025949445 scopus 로고
    • Structural function of residue-209 in coumarin 7-hydroxylase (P450coh)
    • 1885576
    • Structural function of residue-209 in coumarin 7-hydroxylase (P450coh). Juvonen RO, Iwasaki M, Negishi M, J Biol Chem 1991 266 16431 16435 1885576
    • (1991) J Biol Chem , vol.266 , pp. 16431-16435
    • Juvonen, R.O.1    Iwasaki, M.2    Negishi, M.3
  • 73
    • 15844394255 scopus 로고    scopus 로고
    • Identification of residues 99, 220, and 221 of human cytochrome P450 2 C19 as key determinants of omeprazole activity
    • 10.1074/jbc.271.21.12496 8647857
    • Identification of residues 99, 220, and 221 of human cytochrome P450 2 C19 as key determinants of omeprazole activity. Ibeanu GC, Ghanayem BI, Linko P, Li L, Pederson LG, Goldstein JA, J Biol Chem 1996 271 12496 12501 10.1074/jbc.271.21.12496 8647857
    • (1996) J Biol Chem , vol.271 , pp. 12496-12501
    • Ibeanu, G.C.1    Ghanayem, B.I.2    Linko, P.3    Li, L.4    Pederson, L.G.5    Goldstein, J.A.6
  • 74
    • 0027931515 scopus 로고
    • Site-directed mutagenesis of putative substrate recognition sites in cytochrome P450 2B11: Importance of amino acid residues 114, 290, and 363 for substrate specificity
    • 8078495
    • Site-directed mutagenesis of putative substrate recognition sites in cytochrome P450 2B11: importance of amino acid residues 114, 290, and 363 for substrate specificity. Hasler JA, Harlow GR, Szklarz GD, John GH, Kedzie KM, Burnett VL, He YA, Kaminsky LS, Halpert JR, Mol Pharmacol 1994 46 338 345 8078495
    • (1994) Mol Pharmacol , vol.46 , pp. 338-345
    • Hasler, J.A.1    Harlow, G.R.2    Szklarz, G.D.3    John, G.H.4    Kedzie, K.M.5    Burnett, V.L.6    He, Y.A.7    Kaminsky, L.S.8    Halpert, J.R.9
  • 75
    • 0345060785 scopus 로고    scopus 로고
    • Diversification of furanocoumarin- metabolizing cytochrome P450 monooxygenases in two papilionids: Specificity and substrate encounter rate
    • 10.1073/pnas.1934643100 12968082
    • Diversification of furanocoumarin- metabolizing cytochrome P450 monooxygenases in two papilionids: specificity and substrate encounter rate. Li W, Schuler MA, Berenbaum MR, Proc Natl Acad Sci U S A 2003 100 14593 14598 10.1073/pnas.1934643100 12968082
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 14593-14598
    • Li, W.1    Schuler, M.A.2    Berenbaum, M.R.3
  • 76
    • 0034710909 scopus 로고    scopus 로고
    • A single amino acid substitution (F363I) converts the regiochemistry of the spearmint ()-limonene hydroxylase from a C6- to a C3-hydroxylase
    • 10.1073/pnas.97.22.11948 11050228
    • A single amino acid substitution (F363I) converts the regiochemistry of the spearmint ()-limonene hydroxylase from a C6- to a C3-hydroxylase. Schalk M, Croteau R, Proc Natl Acad Sci 2000 97 11948 11953 10.1073/pnas.97.22.11948 11050228
    • (2000) Proc Natl Acad Sci , vol.97 , pp. 11948-11953
    • Schalk, M.1    Croteau, R.2
  • 77
    • 77957737508 scopus 로고    scopus 로고
    • Gene clusters for secondary metabolic pathways: An emerging theme in plant biology
    • 10.1104/pp.110.161315 20921179
    • Gene clusters for secondary metabolic pathways: an emerging theme in plant biology. Osbourn A, Plant Physiol 2010 154 531 535 10.1104/pp.110.161315 20921179
    • (2010) Plant Physiol , vol.154 , pp. 531-535
    • Osbourn, A.1
  • 78
    • 0034687822 scopus 로고    scopus 로고
    • An herbivore elicitor activates the gene for indole emission in maize
    • 10.1073/pnas.260499897 11106389
    • An herbivore elicitor activates the gene for indole emission in maize. Frey M, Stettner C, Pare PW, Schmelz EA, Tumlinson JH, Gierl A, Proc Natl Acad Sci U S A 2000 97 14801 14806 10.1073/pnas.260499897 11106389
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 14801-14806
    • Frey, M.1    Stettner, C.2    Pare, P.W.3    Schmelz, E.A.4    Tumlinson, J.H.5    Gierl, A.6
  • 80
    • 0141565107 scopus 로고    scopus 로고
    • Rearrangement of the genes for the biosynthesis of benzoxazinones in the evolution of Triticeae species
    • 10.1007/s00425-003-1040-5 12734755
    • Rearrangement of the genes for the biosynthesis of benzoxazinones in the evolution of Triticeae species. Nomura T, Ishihara A, Imaishi H, Ohkawa H, Endo TR, Iwamura H, Planta 2003 217 776 782 10.1007/s00425-003-1040-5 12734755
    • (2003) Planta , vol.217 , pp. 776-782
    • Nomura, T.1    Ishihara, A.2    Imaishi, H.3    Ohkawa, H.4    Endo, T.R.5    Iwamura, H.6
  • 81
    • 0000129453 scopus 로고
    • Nonhomoeologous translocations between group 4, 5 and 7 chromosomes within wheat and rye
    • Nonhomoeologous translocations between group 4, 5 and 7 chromosomes within wheat and rye. Liu CJ, Atkinson MD, Chinoy CN, Devos KM, Gale MD, Theor Appl Genet 1993 83 305 312
    • (1993) Theor Appl Genet , vol.83 , pp. 305-312
    • Liu, C.J.1    Atkinson, M.D.2    Chinoy, C.N.3    Devos, K.M.4    Gale, M.D.5
  • 83
    • 80455173624 scopus 로고    scopus 로고
    • Dispersed benzoxazinone gene cluster: Molecular characterization and chromosomal localization of glucosyltransferase and glucosidase genes in wheat and rye
    • Dispersed benzoxazinone gene cluster: molecular characterization and chromosomal localization of glucosyltransferase and glucosidase genes in wheat and rye. Sue M, Nakamura C, Nomura T, Plant Physiol 2011
    • (2011) Plant Physiol
    • Sue, M.1    Nakamura, C.2    Nomura, T.3
  • 86
    • 76049086585 scopus 로고    scopus 로고
    • Genetic variation at bx1 controls DIMBOA content in maize
    • 10.1007/s00122-009-1192-1 19911162
    • Genetic variation at bx1 controls DIMBOA content in maize. Butron A, Chen YC, Rottinghaus GE, McMullen MD, Theor Appl Genet 2010 120 721 734 10.1007/s00122-009-1192-1 19911162
    • (2010) Theor Appl Genet , vol.120 , pp. 721-734
    • Butron, A.1    Chen, Y.C.2    Rottinghaus, G.E.3    McMullen, M.D.4
  • 89
    • 0036010793 scopus 로고    scopus 로고
    • Phylogenetic analysis of the acetyl-CoA carboxylase and 3- phosphoglycerate kinase loci in wheat and other grasses
    • 10.1023/A:1014868320552 11999851
    • Phylogenetic analysis of the acetyl-CoA carboxylase and 3- phosphoglycerate kinase loci in wheat and other grasses. Huang S, Sirikhachornkit A, Faris JD, Su X, Gill BS, Haselkorn R, Gornicki P, Plant Mol Biol 2002 48 805 820 10.1023/A:1014868320552 11999851
    • (2002) Plant Mol Biol , vol.48 , pp. 805-820
    • Huang, S.1    Sirikhachornkit, A.2    Faris, J.D.3    Su, X.4    Gill, B.S.5    Haselkorn, R.6    Gornicki, P.7
  • 90
    • 14744267197 scopus 로고    scopus 로고
    • Updating the crop circle
    • 10.1016/j.pbi.2005.01.005 15752995
    • Updating the crop circle Devos KM, Curr Opin Plant Biol 2005 8 155 162 10.1016/j.pbi.2005.01.005 15752995
    • (2005) Curr Opin Plant Biol , vol.8 , pp. 155-162
    • Devos, K.M.1
  • 91
    • 43549097168 scopus 로고    scopus 로고
    • Identification and characterization of shared duplications between rice and wheat provide new insight into grass genome evolution
    • 10.1105/tpc.107.056309 18178768
    • Identification and characterization of shared duplications between rice and wheat provide new insight into grass genome evolution. Salse J, Bolot S, Throude M, Jouffe V, Piegu B, Quraishi UM, Calcagno T, Cooke R, Delseny M, Feuillet C, Plant Cell 2008 20 11 24 10.1105/tpc.107.056309 18178768
    • (2008) Plant Cell , vol.20 , pp. 11-24
    • Salse, J.1    Bolot, S.2    Throude, M.3    Jouffe, V.4    Piegu, B.5    Quraishi, U.M.6    Calcagno, T.7    Cooke, R.8    Delseny, M.9    Feuillet, C.10
  • 92
    • 76749150030 scopus 로고    scopus 로고
    • Genome sequencing and analysis of the model grass Brachypodium distachyon
    • 10.1038/nature08747 20148030
    • Genome sequencing and analysis of the model grass Brachypodium distachyon. Initiative IB, Nature 2010 463 763 768 10.1038/nature08747 20148030
    • (2010) Nature , vol.463 , pp. 763-768
    • Initiative, I.B.1
  • 94
    • 1942511467 scopus 로고    scopus 로고
    • Phylogenetic analysis of Hordeum (Poaceae) as inferred by nuclear rDNA ITS sequences
    • 10.1016/j.ympev.2004.05.012
    • Phylogenetic analysis of Hordeum (Poaceae) as inferred by nuclear rDNA ITS sequences. Blattner FR, Mol Phylogen Evol 2004 33 289 299 10.1016/j.ympev.2004.05.012
    • (2004) Mol Phylogen Evol , vol.33 , pp. 289-299
    • Blattner, F.R.1
  • 95
    • 0026776064 scopus 로고
    • The Triticeae as sources of hydroxamic acids, secondary metabolites in wheat conferring resistance against aphids
    • The Triticeae as sources of hydroxamic acids, secondary metabolites in wheat conferring resistance against aphids. Niemeyer HM, Copaja SV, Barria BN, Hereditas 1992 116 295 299
    • (1992) Hereditas , vol.116 , pp. 295-299
    • Niemeyer, H.M.1    Copaja, S.V.2    Barria, B.N.3
  • 96
    • 1942533491 scopus 로고    scopus 로고
    • The considerable genome size variation of Hordeum species (Poaceae) is linked to phylogeny, life form, ecology, and speciation rates
    • 10.1093/molbev/msh092 15014163
    • The considerable genome size variation of Hordeum species (Poaceae) is linked to phylogeny, life form, ecology, and speciation rates. Jakob SS, Meister A, Blattner FR, Mol Biol Evol 2004 21 860 869 10.1093/molbev/msh092 15014163
    • (2004) Mol Biol Evol , vol.21 , pp. 860-869
    • Jakob, S.S.1    Meister, A.2    Blattner, F.R.3


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