-
1
-
-
33744467948
-
Detection of live and antibiotic-killed bacteria by quantitative real-time PCR of specific fragments of rRNA
-
Aellen, S., Que, Y.A., Guignard, B., Haenni, M. and Moreillon, P. (2006) Detection of live and antibiotic-killed bacteria by quantitative real-time PCR of specific fragments of rRNA. Antimicrob Agents Chemother 50, 1913-1920.
-
(2006)
Antimicrob Agents Chemother
, vol.50
, pp. 1913-1920
-
-
Aellen, S.1
Que, Y.A.2
Guignard, B.3
Haenni, M.4
Moreillon, P.5
-
2
-
-
1242336855
-
Viable but nonculturable bacteria are present in mouse and human urine specimens
-
Anderson, M., Bollinger, D., Hagler, A., Hartwell, H., Rivers, B., Ward, K. and Steck, T.R. (2004) Viable but nonculturable bacteria are present in mouse and human urine specimens. J Clin Microbiol 42, 753-758.
-
(2004)
J Clin Microbiol
, vol.42
, pp. 753-758
-
-
Anderson, M.1
Bollinger, D.2
Hagler, A.3
Hartwell, H.4
Rivers, B.5
Ward, K.6
Steck, T.R.7
-
3
-
-
77949624903
-
Campylobacter and Arcobacter foodborne microbial pathogens
-
In - New York, NY: Springer.
-
Bhunia, A.K. (2008) Campylobacter and Arcobacter foodborne microbial pathogens. In Foodborne Microbial Pathogens, pp. 217-226. New York, NY: Springer.
-
(2008)
Foodborne Microbial Pathogens
, pp. 217-226
-
-
Bhunia, A.K.1
-
5
-
-
0019783890
-
Double-strand breaks in DNA caused by repair of damage due to ultraviolet light
-
Bradley, M.O. (1981) Double-strand breaks in DNA caused by repair of damage due to ultraviolet light. J Supramol Struct Cell Biochem 16, 337-343.
-
(1981)
J Supramol Struct Cell Biochem
, vol.16
, pp. 337-343
-
-
Bradley, M.O.1
-
6
-
-
70350503115
-
Cryptosporidium propidium monoazide-PCR, a molecular biology-based technique for genotyping of viable Cryptosporidium oocysts
-
Brescia, C.C., Griffin, S.M., Ware, M.W., Varughese, E.A., Egorov, A.I. and Villegas, E.N. (2009) Cryptosporidium propidium monoazide-PCR, a molecular biology-based technique for genotyping of viable Cryptosporidium oocysts. Appl Environ Microbiol 75, 6856-6863.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 6856-6863
-
-
Brescia, C.C.1
Griffin, S.M.2
Ware, M.W.3
Varughese, E.A.4
Egorov, A.I.5
Villegas, E.N.6
-
7
-
-
0029328450
-
Repair of DNA damage induced by ultraviolet radiation
-
Britt, A.B. (1995) Repair of DNA damage induced by ultraviolet radiation. Plant Physiol 108, 891-896.
-
(1995)
Plant Physiol
, vol.108
, pp. 891-896
-
-
Britt, A.B.1
-
8
-
-
52049099615
-
Selective PCR detection of viable Enterobacter sakazakii cells utilizing propidium monoazide or ethidium bromide monoazide
-
Cawthorn, D.M. and Witthuhn, R.C. (2008) Selective PCR detection of viable Enterobacter sakazakii cells utilizing propidium monoazide or ethidium bromide monoazide. J Appl Microbiol 105, 1178-1185.
-
(2008)
J Appl Microbiol
, vol.105
, pp. 1178-1185
-
-
Cawthorn, D.M.1
Witthuhn, R.C.2
-
9
-
-
66249086220
-
Development of cpn60-based real-time quantitative PCR assays for the detection of 14 Campylobacter species and application to screening of canine fecal samples
-
Chaban, B., Musil, K.M., Himsworth, C.G. and Hill, J.E. (2009) Development of cpn60-based real-time quantitative PCR assays for the detection of 14 Campylobacter species and application to screening of canine fecal samples. Appl Environ Microbiol 75, 3055-3061.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 3055-3061
-
-
Chaban, B.1
Musil, K.M.2
Himsworth, C.G.3
Hill, J.E.4
-
10
-
-
77955832640
-
The detection of Yersinia enterocolitica in surface water by quantitative PCR amplification of the ail and yadA genes
-
Cheyne, B.M., Van Dyke, M.I., Anderson, W.B. and Huck, P.M. (2010) The detection of Yersinia enterocolitica in surface water by quantitative PCR amplification of the ail and yadA genes. J Water Health 8, 487-499.
-
(2010)
J Water Health
, vol.8
, pp. 487-499
-
-
Cheyne, B.M.1
Van Dyke, M.I.2
Anderson, W.B.3
Huck, P.M.4
-
12
-
-
80052362316
-
Effect of PCR amplicon length on suppressing signals from membrane-compromised cells by propidium monoazide treatment
-
Contreras, P.J., Urrutia, H., Sossa, K. and Nocker, A. (2011) Effect of PCR amplicon length on suppressing signals from membrane-compromised cells by propidium monoazide treatment. J Microbiol Methods 87, 89-95.
-
(2011)
J Microbiol Methods
, vol.87
, pp. 89-95
-
-
Contreras, P.J.1
Urrutia, H.2
Sossa, K.3
Nocker, A.4
-
13
-
-
0017250384
-
Studies on the mechanism of DNA cleavage by ethidium
-
Deniss, I.S. and Morgan, A.R. (1976) Studies on the mechanism of DNA cleavage by ethidium. Nucleic Acids Res 3, 315-323.
-
(1976)
Nucleic Acids Res
, vol.3
, pp. 315-323
-
-
Deniss, I.S.1
Morgan, A.R.2
-
14
-
-
77955093710
-
Discrimination of infectious bacteriophage T4 virus by propidium monoazide real-time PCR
-
Fittipaldi, M., Rodriguez, N.J., Codony, F., Adrados, B., Penuela, G.A. and Morato, J. (2010) Discrimination of infectious bacteriophage T4 virus by propidium monoazide real-time PCR. J Virol Methods 168, 228-232.
-
(2010)
J Virol Methods
, vol.168
, pp. 228-232
-
-
Fittipaldi, M.1
Rodriguez, N.J.2
Codony, F.3
Adrados, B.4
Penuela, G.A.5
Morato, J.6
-
15
-
-
34249908634
-
Insufficient differentiation of live and dead Campylobacter jejuni and Listeria monocytogenes cells by ethidium monoazide (EMA) compromises EMA/real-time PCR
-
Flekna, G., Stefanic, P., Wagner, M., Smulders, F.J., Mozina, S.S. and Hein, I. (2007) Insufficient differentiation of live and dead Campylobacter jejuni and Listeria monocytogenes cells by ethidium monoazide (EMA) compromises EMA/real-time PCR. Res Microbiol 158, 405-412.
-
(2007)
Res Microbiol
, vol.158
, pp. 405-412
-
-
Flekna, G.1
Stefanic, P.2
Wagner, M.3
Smulders, F.J.4
Mozina, S.S.5
Hein, I.6
-
16
-
-
0019505093
-
Lethal heat induces single strand breaks in the DNA of bacterial spores
-
Grecz, N. and Bruszer, G. (1981) Lethal heat induces single strand breaks in the DNA of bacterial spores. Biochem Biophys Res Commun 98, 191-196.
-
(1981)
Biochem Biophys Res Commun
, vol.98
, pp. 191-196
-
-
Grecz, N.1
Bruszer, G.2
-
17
-
-
4444360858
-
cpnDB: a chaperonin sequence database
-
Hill, J.E., Penny, S.L., Crowell, K.G., Goh, S.H. and Hemmingsen, S.M. (2004) cpnDB: a chaperonin sequence database. Genome Res 14, 1669-1675.
-
(2004)
Genome Res
, vol.14
, pp. 1669-1675
-
-
Hill, J.E.1
Penny, S.L.2
Crowell, K.G.3
Goh, S.H.4
Hemmingsen, S.M.5
-
18
-
-
0033823852
-
Automated 5′ nuclease PCR assay for identification of Salmonella enterica
-
Hoorfar, J., Ahrens, P. and Radstrom, P. (2000) Automated 5′ nuclease PCR assay for identification of Salmonella enterica. J Clin Microbiol 38, 3429-3435.
-
(2000)
J Clin Microbiol
, vol.38
, pp. 3429-3435
-
-
Hoorfar, J.1
Ahrens, P.2
Radstrom, P.3
-
19
-
-
34248164361
-
Optimization of a 12-hour TaqMan PCR-based method for detection of Salmonella bacteria in meat
-
Josefsen, M.H., Krause, M., Hansen, F. and Hoorfar, J. (2007) Optimization of a 12-hour TaqMan PCR-based method for detection of Salmonella bacteria in meat. Appl Environ Microbiol 73, 3040-3048.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 3040-3048
-
-
Josefsen, M.H.1
Krause, M.2
Hansen, F.3
Hoorfar, J.4
-
20
-
-
77955580586
-
Rapid quantification of viable Campylobacter bacteria on chicken carcasses, using real-time PCR and propidium monoazide treatment, as a tool for quantitative risk assessment
-
Josefsen, M.H., Lofstrom, C., Hansen, T.B., Christensen, L.S., Olsen, J.E. and Hoorfar, J. (2010) Rapid quantification of viable Campylobacter bacteria on chicken carcasses, using real-time PCR and propidium monoazide treatment, as a tool for quantitative risk assessment. Appl Environ Microbiol 76, 5097-5104.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 5097-5104
-
-
Josefsen, M.H.1
Lofstrom, C.2
Hansen, T.B.3
Christensen, L.S.4
Olsen, J.E.5
Hoorfar, J.6
-
21
-
-
0027363920
-
Polymerase chain reaction detection of nonviable bacterial pathogens
-
Josephson, K.L., Gerba, C.P. and Pepper, I.L. (1993) Polymerase chain reaction detection of nonviable bacterial pathogens. Appl Environ Microbiol 59, 3513-3515.
-
(1993)
Appl Environ Microbiol
, vol.59
, pp. 3513-3515
-
-
Josephson, K.L.1
Gerba, C.P.2
Pepper, I.L.3
-
22
-
-
64849090618
-
Unsuitable distinction between viable and dead Staphylococcus aureus and Staphylococcus epidermidis by ethidium bromide monoazide
-
Kobayashi, H., Oethinger, M., Tuohy, M.J., Hall, G.S. and Bauer, T.W. (2009) Unsuitable distinction between viable and dead Staphylococcus aureus and Staphylococcus epidermidis by ethidium bromide monoazide. Lett Appl Microbiol 48, 633-638.
-
(2009)
Lett Appl Microbiol
, vol.48
, pp. 633-638
-
-
Kobayashi, H.1
Oethinger, M.2
Tuohy, M.J.3
Hall, G.S.4
Bauer, T.W.5
-
23
-
-
77955095180
-
Mycobacterium avium subsp. paratuberculosis viability determination using F57 quantitative PCR in combination with propidium monoazide treatment
-
Kralik, P., Nocker, A. and Pavlik, I. (2010) Mycobacterium avium subsp. paratuberculosis viability determination using F57 quantitative PCR in combination with propidium monoazide treatment. Int J Food Microbiol 141(Suppl 1), S80-S86.
-
(2010)
Int J Food Microbiol
, vol.141
, Issue.SUPPL. 1
-
-
Kralik, P.1
Nocker, A.2
Pavlik, I.3
-
24
-
-
57149138993
-
A comparative study of the ability of EMA and PMA to distinguish viable from heat killed mixed bacterial flora from fish fillets
-
Lee, J.L. and Levin, R.E. (2009) A comparative study of the ability of EMA and PMA to distinguish viable from heat killed mixed bacterial flora from fish fillets. J Microbiol Methods 76, 93-96.
-
(2009)
J Microbiol Methods
, vol.76
, pp. 93-96
-
-
Lee, J.L.1
Levin, R.E.2
-
25
-
-
79953058634
-
Culture-independent quantification of Salmonella enterica in carcass gauze swabs by flotation prior to real-time PCR
-
Löfström, C., Schelin, J., Norling, B., Vigre, H., Hoorfar, J. and Radstrom, P. (2011) Culture-independent quantification of Salmonella enterica in carcass gauze swabs by flotation prior to real-time PCR. Int J Food Microbiol 145(Suppl 1), S103-S109.
-
(2011)
Int J Food Microbiol
, vol.145
, Issue.SUPPL. 1
-
-
Löfström, C.1
Schelin, J.2
Norling, B.3
Vigre, H.4
Hoorfar, J.5
Radstrom, P.6
-
26
-
-
77149140118
-
Method to detect only viable cells in microbial ecology
-
Luo, J.F., Lin, W.T. and Guo, Y. (2010) Method to detect only viable cells in microbial ecology. Appl Microbiol Biotechnol 86, 377-384.
-
(2010)
Appl Microbiol Biotechnol
, vol.86
, pp. 377-384
-
-
Luo, J.F.1
Lin, W.T.2
Guo, Y.3
-
27
-
-
0029884685
-
Applications of network BLAST server
-
Madden, T.L., Tatusov, R.L. and Zhang, J. (1996) Applications of network BLAST server. Methods Enzymol 266, 131-141.
-
(1996)
Methods Enzymol
, vol.266
, pp. 131-141
-
-
Madden, T.L.1
Tatusov, R.L.2
Zhang, J.3
-
28
-
-
0027769678
-
Effect of amplicon size on PCR detection of bacteria exposed to chlorine
-
McCarty, S.C. and Atlas, R.M. (1993) Effect of amplicon size on PCR detection of bacteria exposed to chlorine. PCR Methods Appl 3, 181-185.
-
(1993)
PCR Methods Appl
, vol.3
, pp. 181-185
-
-
McCarty, S.C.1
Atlas, R.M.2
-
29
-
-
18544368372
-
Prevalence of Campylobacter in the food and water supply: Incidence, outbreaks, isolation and detection
-
In ed. Ketley, J.M. and Konkel, M.E. pp. - Norfolk, UK: Horizon Bioscience.
-
Miller, W.G. and Mandrell, R.E. (2005) Prevalence of Campylobacter in the food and water supply: Incidence, outbreaks, isolation and detection. In Campylobacter: Molecular and Cellular Biology ed. Ketley, J.M. and Konkel, M.E. pp. 101-163. Norfolk, UK: Horizon Bioscience.
-
(2005)
Campylobacter: Molecular and Cellular Biology
, pp. 101-163
-
-
Miller, W.G.1
Mandrell, R.E.2
-
31
-
-
33748746842
-
Comparison of propidium monoazide with ethidium monoazide for differentiation of live vs. dead bacteria by selective removal of DNA from dead cells
-
Nocker, A., Cheung, C.Y. and Camper, A.K. (2006) Comparison of propidium monoazide with ethidium monoazide for differentiation of live vs. dead bacteria by selective removal of DNA from dead cells. J Microbiol Methods 67, 310-320.
-
(2006)
J Microbiol Methods
, vol.67
, pp. 310-320
-
-
Nocker, A.1
Cheung, C.Y.2
Camper, A.K.3
-
32
-
-
34547599355
-
Molecular monitoring of disinfection efficacy using propidium monoazide in combination with quantitative PCR
-
Nocker, A., Sossa, K.E. and Camper, A.K. (2007a) Molecular monitoring of disinfection efficacy using propidium monoazide in combination with quantitative PCR. J Microbiol Methods 70, 252-260.
-
(2007)
J Microbiol Methods
, vol.70
, pp. 252-260
-
-
Nocker, A.1
Sossa, K.E.2
Camper, A.K.3
-
33
-
-
34548261775
-
Use of propidium monoazide for live/dead distinction in microbial ecology
-
Nocker, A., Sossa-Fernandez, P., Burr, M.D. and Camper, A.K. (2007b) Use of propidium monoazide for live/dead distinction in microbial ecology. Appl Environ Microbiol 73, 5111-5117.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 5111-5117
-
-
Nocker, A.1
Sossa-Fernandez, P.2
Burr, M.D.3
Camper, A.K.4
-
34
-
-
0037390078
-
Ethidium monoazide for DNA-based differentiation of viable and dead bacteria by 5′-nuclease PCR
-
810, 812-813
-
Nogva, H.K., Dromtorp, S.M., Nissen, H. and Rudi, K. (2003) Ethidium monoazide for DNA-based differentiation of viable and dead bacteria by 5′-nuclease PCR. Biotechniques 34, 804-808, 810, 812-813.
-
(2003)
Biotechniques
, vol.34
, pp. 804-808
-
-
Nogva, H.K.1
Dromtorp, S.M.2
Nissen, H.3
Rudi, K.4
-
35
-
-
15944387317
-
The viable but nonculturable state in bacteria
-
Oliver, J.D. (2005) The viable but nonculturable state in bacteria. J Microbiol 43, 93-100.
-
(2005)
J Microbiol
, vol.43
, pp. 93-100
-
-
Oliver, J.D.1
-
36
-
-
37349080565
-
Enumeration of viable Listeria monocytogenes cells by real-time PCR with propidium monoazide and ethidium monoazide in the presence of dead cells
-
Pan, Y. and Breidt, F. Jr (2007) Enumeration of viable Listeria monocytogenes cells by real-time PCR with propidium monoazide and ethidium monoazide in the presence of dead cells. Appl Environ Microbiol 73, 8028-8031.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 8028-8031
-
-
Pan, Y.1
Breidt Jr, F.2
-
37
-
-
77954287895
-
Use of propidium monoazide in reverse transcriptase PCR to distinguish between infectious and noninfectious enteric viruses in water samples
-
Parshionikar, S., Laseke, I. and Fout, G.S. (2010) Use of propidium monoazide in reverse transcriptase PCR to distinguish between infectious and noninfectious enteric viruses in water samples. Appl Environ Microbiol 76, 4318-4326.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 4318-4326
-
-
Parshionikar, S.1
Laseke, I.2
Fout, G.S.3
-
38
-
-
34250369243
-
Quantitative detection of Campylobacter jejuni on fresh chicken carcasses by real-time PCR
-
Rönner, A.C. and Lindmark, H. (2007) Quantitative detection of Campylobacter jejuni on fresh chicken carcasses by real-time PCR. J Food Prot 70, 1373-1378.
-
(2007)
J Food Prot
, vol.70
, pp. 1373-1378
-
-
Rönner, A.C.1
Lindmark, H.2
-
39
-
-
13544254304
-
Use of ethidium monoazide and PCR in combination for quantification of viable and dead cells in complex samples
-
Rudi, K., Moen, B., Dromtorp, S.M. and Holck, A.L. (2005) Use of ethidium monoazide and PCR in combination for quantification of viable and dead cells in complex samples. Appl Environ Microbiol 71, 1018-1024.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 1018-1024
-
-
Rudi, K.1
Moen, B.2
Dromtorp, S.M.3
Holck, A.L.4
-
40
-
-
78649626591
-
Different length (DL) qPCR for quantification of cell killing by UV-induced DNA damage
-
Rudi, K., Hagen, I., Johnsrud, B.C., Skjefstad, G. and Tryland, I. (2010) Different length (DL) qPCR for quantification of cell killing by UV-induced DNA damage. Int J Environ Res Public Health 7, 3376-3381.
-
(2010)
Int J Environ Res Public Health
, vol.7
, pp. 3376-3381
-
-
Rudi, K.1
Hagen, I.2
Johnsrud, B.C.3
Skjefstad, G.4
Tryland, I.5
-
41
-
-
34548237732
-
Photoactivated ethidium monoazide directly cleaves bacterial DNA and is applied to PCR for discrimination of live and dead bacteria
-
Soejima, T., Iida, K., Qin, T., Taniai, H., Seki, M., Takade, A. and Yoshida, S. (2007) Photoactivated ethidium monoazide directly cleaves bacterial DNA and is applied to PCR for discrimination of live and dead bacteria. Microbiol Immunol 51, 763-775.
-
(2007)
Microbiol Immunol
, vol.51
, pp. 763-775
-
-
Soejima, T.1
Iida, K.2
Qin, T.3
Taniai, H.4
Seki, M.5
Takade, A.6
Yoshida, S.7
-
42
-
-
49049095766
-
Method to detect only live bacteria during PCR amplification
-
Soejima, T., Iida, K., Qin, T., Taniai, H., Seki, M. and Yoshida, S. (2008) Method to detect only live bacteria during PCR amplification. J Clin Microbiol 46, 2305-2313.
-
(2008)
J Clin Microbiol
, vol.46
, pp. 2305-2313
-
-
Soejima, T.1
Iida, K.2
Qin, T.3
Taniai, H.4
Seki, M.5
Yoshida, S.6
-
43
-
-
80052260329
-
Polymerase chain reaction amplification length-dependent ethidium monoazide suppression power for heat-killed cells of Enterobacteriaceae
-
Soejima, T., Schlitt-Dittrich, F. and Yoshida, S. (2011) Polymerase chain reaction amplification length-dependent ethidium monoazide suppression power for heat-killed cells of Enterobacteriaceae. Anal Biochem 418, 37-43.
-
(2011)
Anal Biochem
, vol.418
, pp. 37-43
-
-
Soejima, T.1
Schlitt-Dittrich, F.2
Yoshida, S.3
-
44
-
-
67651083641
-
Application of a molecular biology concept for the detection of DNA damage and repair during UV disinfection
-
Süss, J., Volz, S., Obst, U. and Schwartz, T. (2009) Application of a molecular biology concept for the detection of DNA damage and repair during UV disinfection. Water Res 43, 3705-3716.
-
(2009)
Water Res
, vol.43
, pp. 3705-3716
-
-
Süss, J.1
Volz, S.2
Obst, U.3
Schwartz, T.4
-
45
-
-
77955814240
-
The occurrence of Campylobacter in river water and waterfowl within a watershed in southern Ontario, Canada
-
Van Dyke, M.I., Morton, V.K., McLellan, N.L. and Huck, P.M. (2010) The occurrence of Campylobacter in river water and waterfowl within a watershed in southern Ontario, Canada. J Appl Microbiol 109, 1053-1066.
-
(2010)
J Appl Microbiol
, vol.109
, pp. 1053-1066
-
-
Van Dyke, M.I.1
Morton, V.K.2
McLellan, N.L.3
Huck, P.M.4
-
46
-
-
38049016343
-
Quantifying fungal viability in air and water samples using quantitative PCR after treatment with propidium monoazide (PMA)
-
Vesper, S., McKinstry, C., Hartmann, C., Neace, M., Yoder, S. and Vesper, A. (2008) Quantifying fungal viability in air and water samples using quantitative PCR after treatment with propidium monoazide (PMA). J Microbiol Methods 72, 180-184.
-
(2008)
J Microbiol Methods
, vol.72
, pp. 180-184
-
-
Vesper, S.1
McKinstry, C.2
Hartmann, C.3
Neace, M.4
Yoder, S.5
Vesper, A.6
-
47
-
-
42349085540
-
Removal of free extracellular DNA from environmental samples by ethidium monoazide and propidium monoazide
-
Wagner, A.O., Malin, C., Knapp, B.A. and Illmer, P. (2008) Removal of free extracellular DNA from environmental samples by ethidium monoazide and propidium monoazide. Appl Environ Microbiol 74, 2537-2539.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 2537-2539
-
-
Wagner, A.O.1
Malin, C.2
Knapp, B.A.3
Illmer, P.4
-
48
-
-
29044443280
-
Discrimination of viable Vibrio vulnificus cells from dead cells in real-time PCR
-
Wang, S. and Levin, R.E. (2006) Discrimination of viable Vibrio vulnificus cells from dead cells in real-time PCR. J Microbiol Methods 64, 1-8.
-
(2006)
J Microbiol Methods
, vol.64
, pp. 1-8
-
-
Wang, S.1
Levin, R.E.2
-
49
-
-
0013793175
-
Complex formation between ethidium bromide and nucleic acids
-
Waring, M.J. (1965) Complex formation between ethidium bromide and nucleic acids. J Mol Biol 13, 269-282.
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(1965)
J Mol Biol
, vol.13
, pp. 269-282
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Waring, M.J.1
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