-
1
-
-
33744467948
-
Detection of live and antibiotic-killed bacteria by quantitative real-time PCR of specific fragments of rRNA
-
Aellen S., Que Y.A., Guignard B., Haenni M., Moreillon P. Detection of live and antibiotic-killed bacteria by quantitative real-time PCR of specific fragments of rRNA. Antimicrob. Agents Chemother. 2006, 50:1913-1920.
-
(2006)
Antimicrob. Agents Chemother.
, vol.50
, pp. 1913-1920
-
-
Aellen, S.1
Que, Y.A.2
Guignard, B.3
Haenni, M.4
Moreillon, P.5
-
2
-
-
0019776174
-
Propidium iodide as a probe for the study of chromatin thermal denaturation in situ
-
Barni S., Polver P.D., Gerzeli G., Nano R. Propidium iodide as a probe for the study of chromatin thermal denaturation in situ. Histochem. J. 1981, 13:781-791.
-
(1981)
Histochem. J.
, vol.13
, pp. 781-791
-
-
Barni, S.1
Polver, P.D.2
Gerzeli, G.3
Nano, R.4
-
3
-
-
0019513663
-
Gene organization and primary structure of ribosomal RNA operon from Escherichia coli
-
Brosius J., Dull T.J., Sleeter D.D., Noller H.F. Gene organization and primary structure of ribosomal RNA operon from Escherichia coli. J. Mol. Biol. 1981, 148:107-127.
-
(1981)
J. Mol. Biol.
, vol.148
, pp. 107-127
-
-
Brosius, J.1
Dull, T.J.2
Sleeter, D.D.3
Noller, H.F.4
-
4
-
-
79960092323
-
Rapid detection of viable Salmonella in produce by coupling propidium monoazide with loop-mediated isothermal amplification (PMA-LAMP)
-
Chen S., Wang F., Beaulieu J.C., Stein R.E., Beilei G. Rapid detection of viable Salmonella in produce by coupling propidium monoazide with loop-mediated isothermal amplification (PMA-LAMP). Appl. Environ. Microbiol. 2011, 77:4008-4016.
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, pp. 4008-4016
-
-
Chen, S.1
Wang, F.2
Beaulieu, J.C.3
Stein, R.E.4
Beilei, G.5
-
5
-
-
0026745606
-
Some modifications in the procedure of direct sequencing of PCR amplified 16S rDNA
-
Dorsch M., Stackebrandt E. Some modifications in the procedure of direct sequencing of PCR amplified 16S rDNA. J. Microbiol. Methods 1992, 16:271-279.
-
(1992)
J. Microbiol. Methods
, vol.16
, pp. 271-279
-
-
Dorsch, M.1
Stackebrandt, E.2
-
6
-
-
63749105211
-
The long amplicon quantitative PCR for DNA damage assay as a sensitive method of assessing DNA damage in the environmental model, Atlantic killifish (Fundulus heteroclitus)
-
Jung D., Cho Y., Meyer J.N., Di Giulio R.T. The long amplicon quantitative PCR for DNA damage assay as a sensitive method of assessing DNA damage in the environmental model, Atlantic killifish (Fundulus heteroclitus). Comp. Biochem. Physiol. C Toxicol. Pharmacol. 2009, 149:182-186.
-
(2009)
Comp. Biochem. Physiol. C Toxicol. Pharmacol.
, vol.149
, pp. 182-186
-
-
Jung, D.1
Cho, Y.2
Meyer, J.N.3
Di Giulio, R.T.4
-
7
-
-
0035173421
-
Rrndb: the RIbosomal RNA Operon Copy Number Database
-
Klappenbach J.A., Saxman P.R., Cole J.R., Schmidt T.M. Rrndb: the RIbosomal RNA Operon Copy Number Database. Nucleic Acids Res. 2001, 29:181-184.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 181-184
-
-
Klappenbach, J.A.1
Saxman, P.R.2
Cole, J.R.3
Schmidt, T.M.4
-
8
-
-
0001857117
-
16S/23S rDNA sequencing
-
Wiley, Chichester, UK, E. Stackebrandt, M. Goodfellow (Eds.)
-
Lane D.J. 16S/23S rDNA sequencing. Nucleic Acid Techniques in Bacterial Systematics 1991, 115-175. Wiley, Chichester, UK. E. Stackebrandt, M. Goodfellow (Eds.).
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 115-175
-
-
Lane, D.J.1
-
9
-
-
0008048504
-
Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses
-
Lane D.J., Pace B., Olsen G.J., Stahlt D.A., Sogint M.L., Pace N.R. Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses. Proc. Natl. Acad. Sci. U. S. A. 1985, 82:6955-6959.
-
(1985)
Proc. Natl. Acad. Sci. U. S. A.
, vol.82
, pp. 6955-6959
-
-
Lane, D.J.1
Pace, B.2
Olsen, G.J.3
Stahlt, D.A.4
Sogint, M.L.5
Pace, N.R.6
-
10
-
-
0027278557
-
Instability and decay of the primary structure of DNA
-
Lindahl T. Instability and decay of the primary structure of DNA. Nature 1993, 362:709-715.
-
(1993)
Nature
, vol.362
, pp. 709-715
-
-
Lindahl, T.1
-
11
-
-
79953207371
-
Propidium monoazide combined with real-time quantitative PCR underestimates heat-killed Listeria innocua
-
Løvdal T., Hovda M.B., Björkblom B., Møller S.G. Propidium monoazide combined with real-time quantitative PCR underestimates heat-killed Listeria innocua. J. Microbiol. Methods 2011, 85:164-169.
-
(2011)
J. Microbiol. Methods
, vol.85
, pp. 164-169
-
-
Løvdal, T.1
Hovda, M.B.2
Björkblom, B.3
Møller, S.G.4
-
12
-
-
77149140118
-
Method to detect only viable cells in microbial ecology
-
Luo J.F., Lin W.T., Guo Y. Method to detect only viable cells in microbial ecology. Appl. Microbiol. Biotechnol. 2009, 86:377-384.
-
(2009)
Appl. Microbiol. Biotechnol.
, vol.86
, pp. 377-384
-
-
Luo, J.F.1
Lin, W.T.2
Guo, Y.3
-
13
-
-
0031745941
-
Design and evaluation of useful bacterium-specific PCR primers that amplify genes coding for bacterial 16S rRNA
-
Marchesi J.R., Sato T., Weightman A.J., Martin T.A., Fry J.C., Hiom S.J., Wade W.G. Design and evaluation of useful bacterium-specific PCR primers that amplify genes coding for bacterial 16S rRNA. Appl. Environ. Microbiol. 1998, 64:795-799.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 795-799
-
-
Marchesi, J.R.1
Sato, T.2
Weightman, A.J.3
Martin, T.A.4
Fry, J.C.5
Hiom, S.J.6
Wade, W.G.7
-
14
-
-
80052352011
-
Effect of amplicon size on the differentiation of viable and nonviable Dekkera bruxellensis using EMA and real-time PCR
-
Poster P141
-
Massel M., Phister T.G. Effect of amplicon size on the differentiation of viable and nonviable Dekkera bruxellensis using EMA and real-time PCR. Society for Industrial Microbiology, 60th Annual Meeting 2010, Poster P141.
-
(2010)
Society for Industrial Microbiology, 60th Annual Meeting
-
-
Massel, M.1
Phister, T.G.2
-
15
-
-
0027769678
-
Effect of amplicon size on PCR detection of bacteria exposed to chlorine
-
McCarty S.C., Atlas R.M. Effect of amplicon size on PCR detection of bacteria exposed to chlorine. Genome Res. 1993, 3:181-185.
-
(1993)
Genome Res.
, vol.3
, pp. 181-185
-
-
McCarty, S.C.1
Atlas, R.M.2
-
16
-
-
77952236020
-
QPCR: a tool for analysis of mitochondrial and nuclear DNA damage in ecotoxicology
-
Meyer J.N. QPCR: a tool for analysis of mitochondrial and nuclear DNA damage in ecotoxicology. Ecotoxicology 2010, 19:804-811.
-
(2010)
Ecotoxicology
, vol.19
, pp. 804-811
-
-
Meyer, J.N.1
-
17
-
-
0027460328
-
Profiling of complex microbial population by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
-
Muyzer G., de Waal E., Uitterlinden A. Profiling of complex microbial population by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 1993, 59:695-700.
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, pp. 695-700
-
-
Muyzer, G.1
de Waal, E.2
Uitterlinden, A.3
-
18
-
-
33748746842
-
Comparison of propidium monoazide with ethidium monoazide for differentiation of live vs. dead bacteria by selective removal of DNA from dead cells
-
Nocker A., Cheung C.Y., Camper A.K. Comparison of propidium monoazide with ethidium monoazide for differentiation of live vs. dead bacteria by selective removal of DNA from dead cells. J. Microbiol. Methods 2006, 67:310-320.
-
(2006)
J. Microbiol. Methods
, vol.67
, pp. 310-320
-
-
Nocker, A.1
Cheung, C.Y.2
Camper, A.K.3
-
19
-
-
34547599355
-
Molecular monitoring of disinfection efficacy using propidium monoazide in combination with quantitative PCR
-
Nocker A., Sossa K.E., Camper A.K. Molecular monitoring of disinfection efficacy using propidium monoazide in combination with quantitative PCR. J. Microbiol. Methods 2007, 70:252-260.
-
(2007)
J. Microbiol. Methods
, vol.70
, pp. 252-260
-
-
Nocker, A.1
Sossa, K.E.2
Camper, A.K.3
-
20
-
-
80052363853
-
A multiparameter viability assay for stress profiling applied to the food pathogen Listeria monocytogenes F2365
-
Jul 15 [Epub ahead of print]
-
Nocker A., Caspers M., Esveld-Amanatidou A., van der Vossen J., Schuren F., Montijn R., Kort R. A multiparameter viability assay for stress profiling applied to the food pathogen Listeria monocytogenes F2365. Appl. Environ. Microbiol. 2011, Jul 15 [Epub ahead of print].
-
(2011)
Appl. Environ. Microbiol.
-
-
Nocker, A.1
Caspers, M.2
Esveld-Amanatidou, A.3
van der Vossen, J.4
Schuren, F.5
Montijn, R.6
Kort, R.7
-
21
-
-
13544272406
-
Ethidium monoazide for DNA-based differentiation of viable and dead bacteria by 5'-nuclease
-
Nogva H.K., Dromtorp S.M., Nissen H., Rudi K. Ethidium monoazide for DNA-based differentiation of viable and dead bacteria by 5'-nuclease. PCR Biotechniques 2003, 810:812-813.
-
(2003)
PCR Biotechniques
, vol.810
, pp. 812-813
-
-
Nogva, H.K.1
Dromtorp, S.M.2
Nissen, H.3
Rudi, K.4
-
22
-
-
34547800097
-
Pyrosequencing enumerates and contrasts soil microbial diversity
-
Roesch L.F., Fulthorpe R.R., Riva A., Casella G., Hadwin A.K., Kent A.D., Daroub S.H., Camargo F.A., Farmerie W.G., Triplett E.W. Pyrosequencing enumerates and contrasts soil microbial diversity. ISME J. 2007, 1:283-290.
-
(2007)
ISME J.
, vol.1
, pp. 283-290
-
-
Roesch, L.F.1
Fulthorpe, R.R.2
Riva, A.3
Casella, G.4
Hadwin, A.K.5
Kent, A.D.6
Daroub, S.H.7
Camargo, F.A.8
Farmerie, W.G.9
Triplett, E.W.10
-
23
-
-
13544254304
-
Use of ethidium monoazide and PCR in combination for quantification of viable and dead cells in complex samples
-
Rudi K., Moen B., Drømtorp S.M., Holck A.L. Use of ethidium monoazide and PCR in combination for quantification of viable and dead cells in complex samples. Appl. Environ. Microbiol. 2005, 71:1018-1024.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 1018-1024
-
-
Rudi, K.1
Moen, B.2
Drømtorp, S.M.3
Holck, A.L.4
-
24
-
-
78649626591
-
Different length (DL) qPCR for quantification of cell killing by UV-induced DNA damage
-
Rudi K., Hagen I., Johnsrud B.C., Skjefstad G., Tryland I. Different length (DL) qPCR for quantification of cell killing by UV-induced DNA damage. Int. J. Environ. Res. Public Health 2010, 7:3376-3381.
-
(2010)
Int. J. Environ. Res. Public Health
, vol.7
, pp. 3376-3381
-
-
Rudi, K.1
Hagen, I.2
Johnsrud, B.C.3
Skjefstad, G.4
Tryland, I.5
-
25
-
-
33645108583
-
Degradation of the poliovirus 1 genome by chlorine dioxide
-
Simonet J., Gantzer C. Degradation of the poliovirus 1 genome by chlorine dioxide. J. Appl. Microbiol. 2006, 100:862-870.
-
(2006)
J. Appl. Microbiol.
, vol.100
, pp. 862-870
-
-
Simonet, J.1
Gantzer, C.2
-
26
-
-
34548237732
-
Photoactivated ethidium monoazide directly cleaves bacterial DNA and is applied to PCR for discrimination of live and dead bacteria
-
Soejima T., Iida K., Qin T., Taniai H., Seki M., Takade A., Yoshida S. Photoactivated ethidium monoazide directly cleaves bacterial DNA and is applied to PCR for discrimination of live and dead bacteria. Microbiol. Immunol. 2007, 51:763-775.
-
(2007)
Microbiol. Immunol.
, vol.51
, pp. 763-775
-
-
Soejima, T.1
Iida, K.2
Qin, T.3
Taniai, H.4
Seki, M.5
Takade, A.6
Yoshida, S.7
-
27
-
-
49049095766
-
Method to detect only live bacteria during PCR amplification
-
Soejima T., Iida K., Qin T., Taniai H., Seki M., Yoshida S. Method to detect only live bacteria during PCR amplification. J. Clin. Microbiol. 2008, 46:2305-2313.
-
(2008)
J. Clin. Microbiol.
, vol.46
, pp. 2305-2313
-
-
Soejima, T.1
Iida, K.2
Qin, T.3
Taniai, H.4
Seki, M.5
Yoshida, S.6
-
28
-
-
67651083641
-
Application of a molecular biology concept for the detection of DNA damage and repair during UV disinfection
-
Süß J., Volz S., Obst U., Schwartz T. Application of a molecular biology concept for the detection of DNA damage and repair during UV disinfection. Water Res. 2009, 43:3705-3716.
-
(2009)
Water Res.
, vol.43
, pp. 3705-3716
-
-
Süß, J.1
Volz, S.2
Obst, U.3
Schwartz, T.4
-
29
-
-
0030067991
-
Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
-
Suzuki M.T., Giovannoni S.J. Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl. Environ. Microbiol. 1996, 62:625-630.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 625-630
-
-
Suzuki, M.T.1
Giovannoni, S.J.2
-
30
-
-
0038429525
-
Microbiological studies in coastal waters of the Northern Baltic Sea. I. Distribution and abundance of bacteria and yeasts in the Tvarminne area
-
Vaatanen P. Microbiological studies in coastal waters of the Northern Baltic Sea. I. Distribution and abundance of bacteria and yeasts in the Tvarminne area. Walter Andre Nottbeck Found. Sci. Rep. 1976, 1:1-58.
-
(1976)
Walter Andre Nottbeck Found. Sci. Rep.
, vol.1
, pp. 1-58
-
-
Vaatanen, P.1
-
31
-
-
0034713926
-
Measuring gene-specific nucleotide excision repair in human cells using quantitative amplification of long targets from nanogram quantities of DNA
-
Van Houten B., Cheng S., Chen Y. Measuring gene-specific nucleotide excision repair in human cells using quantitative amplification of long targets from nanogram quantities of DNA. Mutat. Res. 2000, 460:81-94.
-
(2000)
Mutat. Res.
, vol.460
, pp. 81-94
-
-
Van Houten, B.1
Cheng, S.2
Chen, Y.3
-
32
-
-
0022796578
-
Specificity in DNA interactions: an NMR investigation of the interaction of propidium with oligodeoxyribonucleotides containing normal and G·T base pairs
-
Wilson W.D., Jones R.L., Zon G., Banville D.L., Marzilli L.G. Specificity in DNA interactions: an NMR investigation of the interaction of propidium with oligodeoxyribonucleotides containing normal and G·T base pairs. Biopolymers 2004, 25:1997-2015.
-
(2004)
Biopolymers
, vol.25
, pp. 1997-2015
-
-
Wilson, W.D.1
Jones, R.L.2
Zon, G.3
Banville, D.L.4
Marzilli, L.G.5
-
33
-
-
0031032817
-
Mitochondrial DNA damage is more extensive and persists longer than nuclear DNA damage in human cells following oxidative stress
-
Yakes F.M., Van Houten B. Mitochondrial DNA damage is more extensive and persists longer than nuclear DNA damage in human cells following oxidative stress. Proc. Natl. Acad. Sci. U. S. A. 1997, 94:514-519.
-
(1997)
Proc. Natl. Acad. Sci. U. S. A.
, vol.94
, pp. 514-519
-
-
Yakes, F.M.1
Van Houten, B.2
|