-
1
-
-
77954620534
-
Phosphorylation of eIF2 alpha in Sf9 cells: a stress, survival and suicidal signal
-
Aarti I, Rajesh K, Ramaiah KV. 2010. Phosphorylation of eIF2 alpha in Sf9 cells: a stress, survival and suicidal signal. Apoptosis 15:679-692.
-
(2010)
Apoptosis
, vol.15
, pp. 679-692
-
-
Aarti, I.1
Rajesh, K.2
Ramaiah, K.V.3
-
2
-
-
0033605371
-
Characterization of transgenic mice with targeted disruption of the catalytic domain of the double-stranded RNA-dependent protein kinase, PKR
-
Abraham N, et al. 1999. Characterization of transgenic mice with targeted disruption of the catalytic domain of the double-stranded RNA-dependent protein kinase, PKR. J. Biol. Chem. 274:5953-5962.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 5953-5962
-
-
Abraham, N.1
-
3
-
-
33646152751
-
Antiviral effect of the mammalian translation initiation factor 2alpha kinase GCN2 against RNA viruses
-
Berlanga JJ, et al. 2006. Antiviral effect of the mammalian translation initiation factor 2alpha kinase GCN2 against RNA viruses. EMBO J. 25:1730-1740.
-
(2006)
EMBO J.
, vol.25
, pp. 1730-1740
-
-
Berlanga, J.J.1
-
4
-
-
0035854473
-
Interferon-gamma-mediated site-specific clearance of alphavirus from CNS neurons
-
Binder GK, Griffin DE. 2001. Interferon-gamma-mediated site-specific clearance of alphavirus from CNS neurons. Science 293:303-306.
-
(2001)
Science
, vol.293
, pp. 303-306
-
-
Binder, G.K.1
Griffin, D.E.2
-
5
-
-
0026419333
-
Structure of Sindbis virus core protein reveals a chymotrypsin-like serine proteinase and the organization of the virion
-
Choi HK, et al. 1991. Structure of Sindbis virus core protein reveals a chymotrypsin-like serine proteinase and the organization of the virion. Nature 354:37-43.
-
(1991)
Nature
, vol.354
, pp. 37-43
-
-
Choi, H.K.1
-
6
-
-
33144458778
-
RNA secondary structure in the coding region of dengue virus type 2 directs translation start codon selection and is required for viral replication
-
Clyde K, Harris E. 2006. RNA secondary structure in the coding region of dengue virus type 2 directs translation start codon selection and is required for viral replication. J. Virol. 80:2170-2182.
-
(2006)
J. Virol.
, vol.80
, pp. 2170-2182
-
-
Clyde, K.1
Harris, E.2
-
7
-
-
44349192263
-
Arbovirus evolution in vivo is constrained by host alternation
-
Coffey LL, et al. 2008. Arbovirus evolution in vivo is constrained by host alternation. Proc. Natl. Acad. Sci. U. S. A. 105:6970-6975.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 6970-6975
-
-
Coffey, L.L.1
-
8
-
-
0037405245
-
Luciferase imaging of a neurotropic viral infection in intact animals
-
Cook SH, Griffin DE. 2003. Luciferase imaging of a neurotropic viral infection in intact animals. J. Virol. 77:5333-5338.
-
(2003)
J. Virol.
, vol.77
, pp. 5333-5338
-
-
Cook, S.H.1
Griffin, D.E.2
-
9
-
-
33744476400
-
Is RNA interference involved in intrinsic antiviral immunity in mammals?
-
Cullen BR. 2006. Is RNA interference involved in intrinsic antiviral immunity in mammals? Nat. Immunol. 7:563-567.
-
(2006)
Nat. Immunol.
, vol.7
, pp. 563-567
-
-
Cullen, B.R.1
-
11
-
-
48249102000
-
Phylogeny.fr: robust phylogenetic analysis for the non-specialist
-
Dereeper A, et al. 2008. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 36: W465-W469.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Dereeper, A.1
-
12
-
-
0037154965
-
Gene-specific regulation by general translation factors
-
Dever TE. 2002. Gene-specific regulation by general translation factors. Cell 108:545-556.
-
(2002)
Cell
, vol.108
, pp. 545-556
-
-
Dever, T.E.1
-
13
-
-
85013826616
-
-
2nd ed. Academic Press, Waltham, MA
-
Domingo E, Parrish CR, Holland JJ. 2008. Origin and evolution of viruses, 2nd ed. Academic Press, Waltham, MA.
-
(2008)
Origin and evolution of viruses
-
-
Domingo, E.1
Parrish, C.R.2
Holland, J.J.3
-
14
-
-
79551622116
-
Diversity in viral anti-PKR mechanisms: a remarkable case of evolutionary convergence
-
Domingo-Gil E, Toribio R, Najera JL, Esteban M, Ventoso I. 2011. Diversity in viral anti-PKR mechanisms: a remarkable case of evolutionary convergence. PLoS One 6:e16711. doi:10.1371/journal.pone.0016711.
-
(2011)
PLoS One
, vol.6
-
-
Domingo-Gil, E.1
Toribio, R.2
Najera, J.L.3
Esteban, M.4
Ventoso, I.5
-
15
-
-
0032553467
-
Experimental evolution of parasites
-
Ebert D. 1998. Experimental evolution of parasites. Science 282:1432-1435.
-
(1998)
Science
, vol.282
, pp. 1432-1435
-
-
Ebert, D.1
-
16
-
-
58749102026
-
Protein kinase R reveals an evolutionary model for defeating viral mimicry
-
Elde NC, Child SJ, Geballe AP, Malik HS. 2009. Protein kinase R reveals an evolutionary model for defeating viral mimicry. Nature 457:485-489.
-
(2009)
Nature
, vol.457
, pp. 485-489
-
-
Elde, N.C.1
Child, S.J.2
Geballe, A.P.3
Malik, H.S.4
-
17
-
-
70350208780
-
The evolutionary conundrum of pathogen mimicry
-
Elde NC, Malik HS. 2009. The evolutionary conundrum of pathogen mimicry. Nat. Rev. Microbiol. 7:787-797.
-
(2009)
Nat. Rev. Microbiol.
, vol.7
, pp. 787-797
-
-
Elde, N.C.1
Malik, H.S.2
-
19
-
-
48449102817
-
MAGNOLIA: multiple alignment of protein-coding and structural RNA sequences
-
Fontaine A, de Monte A, Touzet H. 2008. MAGNOLIA: multiple alignment of protein-coding and structural RNA sequences. Nucleic Acids Res. 36: W14-W18.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Fontaine, A.1
de Monte, A.2
Touzet, H.3
-
20
-
-
84857853808
-
Genome-scale phylogeny of the alphavirus genus suggests a marine origin
-
Forrester NL, et al. Genome-scale phylogeny of the alphavirus genus suggests a marine origin. J. Virol. 86: 2729-2738.
-
J. Virol
, vol.86
, pp. 2729-2738
-
-
Forrester, N.L.1
-
21
-
-
0030068269
-
Translation of Sindbis virus mRNA: analysis of sequences downstream of the initiating AUG codon that enhance translation
-
Frolov I, Schlesinger S. 1996. Translation of Sindbis virus mRNA: analysis of sequences downstream of the initiating AUG codon that enhance translation. J. Virol. 70:1182-1190.
-
(1996)
J. Virol.
, vol.70
, pp. 1182-1190
-
-
Frolov, I.1
Schlesinger, S.2
-
22
-
-
0028171032
-
Translation of Sindbis virus mRNA: effects of sequences downstream of the initiating codon
-
Frolov I, Schlesinger S. 1994. Translation of Sindbis virus mRNA: effects of sequences downstream of the initiating codon. J. Virol. 68:8111-8117.
-
(1994)
J. Virol.
, vol.68
, pp. 8111-8117
-
-
Frolov, I.1
Schlesinger, S.2
-
23
-
-
33744494279
-
Essential function in vivo for Dicer-2 in host defense against RNA viruses in Drosophila
-
Galiana-Arnoux D, Dostert C, Schneemann A, Hoffmann JA, Imler JL. 2006. Essential function in vivo for Dicer-2 in host defense against RNA viruses in Drosophila. Nat. Immunol. 7:590-597.
-
(2006)
Nat. Immunol.
, vol.7
, pp. 590-597
-
-
Galiana-Arnoux, D.1
Dostert, C.2
Schneemann, A.3
Hoffmann, J.A.4
Imler, J.L.5
-
24
-
-
33845627785
-
Impact of protein kinase PKR in cell biology: from antiviral to antiproliferative action
-
Garcia MA, et al. 2006. Impact of protein kinase PKR in cell biology: from antiviral to antiproliferative action. Microbiol. Mol. Biol. Rev. 70:1032-1060.
-
(2006)
Microbiol. Mol. Biol. Rev.
, vol.70
, pp. 1032-1060
-
-
Garcia, M.A.1
-
26
-
-
8444249576
-
The acquired immune system: a vantage from beneath
-
Hedrick SM. 2004. The acquired immune system: a vantage from beneath. Immunity 21:607-615.
-
(2004)
Immunity
, vol.21
, pp. 607-615
-
-
Hedrick, S.M.1
-
27
-
-
53449102765
-
Sindbis virus: propagation, quantification, and storage
-
15B.1.1-15B.1.41.1. doi:10.1002/9780471729259.mc15b01s16
-
Hernandez R, Sinodis C, Brown DT. 2005. Sindbis virus: propagation, quantification, and storage. Curr. Protoc. Microbiol. 16: 15B.1.1-15B.1.41.1. doi:10.1002/9780471729259.mc15b01s16.
-
(2005)
Curr. Protoc. Microbiol
, vol.16
-
-
Hernandez, R.1
Sinodis, C.2
Brown, D.T.3
-
29
-
-
77952541589
-
Phylogeographic structure and evolutionary history of Sindbis virus
-
Lundstrom JO, Pfeffer M. 2010. Phylogeographic structure and evolutionary history of Sindbis virus. Vector Borne Zoonotic Dis. 10:889-907.
-
(2010)
Vector Borne Zoonotic Dis.
, vol.10
, pp. 889-907
-
-
Lundstrom, J.O.1
Pfeffer, M.2
-
31
-
-
0025298202
-
Molecular cloning and characterization of the human double-stranded RNA-activated protein kinase induced by interferon
-
Meurs E, et al. 1990. Molecular cloning and characterization of the human double-stranded RNA-activated protein kinase induced by interferon. Cell 62:379-390.
-
(1990)
Cell
, vol.62
, pp. 379-390
-
-
Meurs, E.1
-
33
-
-
0034623005
-
T-Coffee: a novel method for fast and accurate multiple sequence alignment
-
Notredame C, Higgins DG, Heringa J. 2000. T-Coffee: a novel method for fast and accurate multiple sequence alignment. J. Mol. Biol. 302:205-217.
-
(2000)
J. Mol. Biol.
, vol.302
, pp. 205-217
-
-
Notredame, C.1
Higgins, D.G.2
Heringa, J.3
-
34
-
-
40449139010
-
The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data
-
Parisien M, Major F. 2008. The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data. Nature 452:51-55.
-
(2008)
Nature
, vol.452
, pp. 51-55
-
-
Parisien, M.1
Major, F.2
-
35
-
-
0014671109
-
Behaviour of infectious RNA from four different viruses in continuously subcultured Aedes aegypti mosquito embryo cells
-
Peleg J. 1969. Behaviour of infectious RNA from four different viruses in continuously subcultured Aedes aegypti mosquito embryo cells. Nature 221:193-194.
-
(1969)
Nature
, vol.221
, pp. 193-194
-
-
Peleg, J.1
-
36
-
-
0038447231
-
A heterologous coiled coil can substitute for helix I of the Sindbis virus capsid protein
-
Perera R, Navaratnarajah C, Kuhn RJ. 2003. A heterologous coiled coil can substitute for helix I of the Sindbis virus capsid protein. J. Virol. 77:8345-8353.
-
(2003)
J. Virol.
, vol.77
, pp. 8345-8353
-
-
Perera, R.1
Navaratnarajah, C.2
Kuhn, R.J.3
-
37
-
-
34548694962
-
Innate recognition of viruses
-
Pichlmair A, Reis e Sousa C. 2007. Innate recognition of viruses. Immunity 27:370-383.
-
(2007)
Immunity
, vol.27
, pp. 370-383
-
-
Pichlmair, A.1
Reis e Sousa, C.2
-
38
-
-
33747828694
-
ModelTest Server: a web-based tool for the statistical selection of models of nucleotide substitution online
-
Posada D. 2006. ModelTest Server: a web-based tool for the statistical selection of models of nucleotide substitution online. Nucleic Acids Res. 34: W700-W703.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Posada, D.1
-
39
-
-
33750592132
-
Genetic relationships among Mayaro and Una viruses suggest distinct patterns of transmission
-
Powers AM, et al. 2006. Genetic relationships among Mayaro and Una viruses suggest distinct patterns of transmission. Am. J. Trop. Med. Hyg. 75:461-469.
-
(2006)
Am. J. Trop. Med. Hyg.
, vol.75
, pp. 461-469
-
-
Powers, A.M.1
-
40
-
-
0034795886
-
Evolutionary relationships and systematics of the alphaviruses
-
Powers AM, et al. 2001. Evolutionary relationships and systematics of the alphaviruses. J. Virol. 75:10118-10131.
-
(2001)
J. Virol.
, vol.75
, pp. 10118-10131
-
-
Powers, A.M.1
-
41
-
-
0017649583
-
Role of extracellular virus on the maintenance of the persistent infection induced in Aedes albopictus (mosquito) cells by Sindbis virus
-
Riedel B, Brown DT. 1977. Role of extracellular virus on the maintenance of the persistent infection induced in Aedes albopictus (mosquito) cells by Sindbis virus. J. Virol. 23:554-561.
-
(1977)
J. Virol.
, vol.23
, pp. 554-561
-
-
Riedel, B.1
Brown, D.T.2
-
42
-
-
58149234074
-
Rapid evolution of protein kinase PKR alters sensitivity to viral inhibitors
-
Rothenburg S, Seo EJ, Gibbs JS, Dever TE, Dittmar K. 2009. Rapid evolution of protein kinase PKR alters sensitivity to viral inhibitors. Nat. Struct. Mol. Biol. 16:63-70.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 63-70
-
-
Rothenburg, S.1
Seo, E.J.2
Gibbs, J.S.3
Dever, T.E.4
Dittmar, K.5
-
43
-
-
0028989915
-
Aura virus is a New World representative of Sindbis-like viruses
-
Rumenapf T, Strauss EG, Strauss JH. 1995. Aura virus is a New World representative of Sindbis-like viruses. Virology 208:621-633.
-
(1995)
Virology
, vol.208
, pp. 621-633
-
-
Rumenapf, T.1
Strauss, E.G.2
Strauss, J.H.3
-
44
-
-
0028181666
-
Subgenomic mRNA of Aura alphavirus is packaged into virions
-
Rumenapf T, Strauss EG, Strauss JH. 1994. Subgenomic mRNA of Aura alphavirus is packaged into virions. J. Virol. 68:56-62.
-
(1994)
J. Virol.
, vol.68
, pp. 56-62
-
-
Rumenapf, T.1
Strauss, E.G.2
Strauss, J.H.3
-
45
-
-
46249115827
-
Interferon-inducible antiviral effectors
-
Sadler AJ, Williams BR. 2008. Interferon-inducible antiviral effectors. Nat. Rev. Immunol. 8:559-568.
-
(2008)
Nat. Rev. Immunol.
, vol.8
, pp. 559-568
-
-
Sadler, A.J.1
Williams, B.R.2
-
46
-
-
62649144073
-
Antiviral immunity in Drosophila requires systemic RNA interference spread
-
Saleh MC, et al. 2009. Antiviral immunity in Drosophila requires systemic RNA interference spread. Nature 458:346-350.
-
(2009)
Nature
, vol.458
, pp. 346-350
-
-
Saleh, M.C.1
-
47
-
-
0032989810
-
Geographic distribution and evolution of Sindbis virus in Australia
-
Sammels LM, Lindsay MD, Poidinger M, Coelen RJ, Mackenzie JS. 1999. Geographic distribution and evolution of Sindbis virus in Australia. J. Gen. Virol. 80:739-748.
-
(1999)
J. Gen. Virol.
, vol.80
, pp. 739-748
-
-
Sammels, L.M.1
Lindsay, M.D.2
Poidinger, M.3
Coelen, R.J.4
Mackenzie, J.S.5
-
48
-
-
0028088152
-
The alphaviruses: gene expression, replication, and evolution
-
Strauss JH, Strauss EG. 1994. The alphaviruses: gene expression, replication, and evolution. Microbiol. Rev. 58:491-562.
-
(1994)
Microbiol. Rev.
, vol.58
, pp. 491-562
-
-
Strauss, J.H.1
Strauss, E.G.2
-
49
-
-
34547781750
-
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
-
Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596-1599.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
50
-
-
0035128334
-
In vitro assembly of Sindbis virus core-like particles from cross-linked dimers of truncated and mutant capsid proteins
-
Tellinghuisen TL, Perera R, Kuhn RJ. 2001. In vitro assembly of Sindbis virus core-like particles from cross-linked dimers of truncated and mutant capsid proteins. J. Virol. 75:2810-2817.
-
(2001)
J. Virol.
, vol.75
, pp. 2810-2817
-
-
Tellinghuisen, T.L.1
Perera, R.2
Kuhn, R.J.3
-
51
-
-
77953117609
-
Inhibition of host translation by virus infection in vivo
-
Toribio R, Ventoso I. 2010. Inhibition of host translation by virus infection in vivo. Proc. Natl. Acad. Sci. U. S. A. 107:9837-9842.
-
(2010)
Proc. Natl. Acad. Sci. U. S. A.
, vol.107
, pp. 9837-9842
-
-
Toribio, R.1
Ventoso, I.2
-
52
-
-
52949152433
-
ShapeFinder: a software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis
-
Vasa SM, Guex N, Wilkinson KA, Weeks KM, Giddings MC. 2008. ShapeFinder: a software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis. RNA 14:1979-1990.
-
(2008)
RNA
, vol.14
, pp. 1979-1990
-
-
Vasa, S.M.1
Guex, N.2
Wilkinson, K.A.3
Weeks, K.M.4
Giddings, M.C.5
-
53
-
-
67650915053
-
Mosquitoes put the brake on arbovirus evolution: experimental evolution reveals slower mutation accumulation in mosquito than vertebrate cells
-
doi:10.1371/ journal.ppat.1000467
-
Vasilakis N, et al. 2009. Mosquitoes put the brake on arbovirus evolution: experimental evolution reveals slower mutation accumulation in mosquito than vertebrate cells. PLoS Pathog. 5:e1000467. doi:10.1371/ journal.ppat.1000467.
-
(2009)
PLoS Pathog
, vol.5
-
-
Vasilakis, N.1
-
54
-
-
77951471913
-
Translation control by protein kinaseRrestricts minute virus of mice infection: role in parvovirus oncolysis
-
Ventoso I, Berlanga JJ, Almendral JM. 2010. Translation control by protein kinaseRrestricts minute virus of mice infection: role in parvovirus oncolysis. J. Virol. 84:5043-5051.
-
(2010)
J. Virol.
, vol.84
, pp. 5043-5051
-
-
Ventoso, I.1
Berlanga, J.J.2
Almendral, J.M.3
-
55
-
-
29944433224
-
Translational resistance of late alphavirus mRNA to eIF2alpha phosphorylation: a strategy to overcome the antiviral effect of protein kinase PKR
-
Ventoso I, et al. 2006. Translational resistance of late alphavirus mRNA to eIF2alpha phosphorylation: a strategy to overcome the antiviral effect of protein kinase PKR. Genes Dev. 20:87-100.
-
(2006)
Genes Dev.
, vol.20
, pp. 87-100
-
-
Ventoso, I.1
-
56
-
-
11144324185
-
Disruption of Erk-dependent type I interferon induction breaks the myxoma virus species barrier
-
Wang F, et al. 2004. Disruption of Erk-dependent type I interferon induction breaks the myxoma virus species barrier. Nat. Immunol. 5:1266-1274.
-
(2004)
Nat. Immunol.
, vol.5
, pp. 1266-1274
-
-
Wang, F.1
-
57
-
-
30644459759
-
Evolutionary influences in arboviral disease
-
Weaver SC. 2006. Evolutionary influences in arboviral disease. Curr. Top. Microbiol. Immunol. 299:285-314.
-
(2006)
Curr. Top. Microbiol. Immunol.
, vol.299
, pp. 285-314
-
-
Weaver, S.C.1
-
58
-
-
4844225284
-
Transmission cycles, host range, evolution and emergence of arboviral disease
-
Weaver SC, Barrett AD. 2004. Transmission cycles, host range, evolution and emergence of arboviral disease. Nat. Rev. Microbiol. 2:789-801.
-
(2004)
Nat. Rev. Microbiol.
, vol.2
, pp. 789-801
-
-
Weaver, S.C.1
Barrett, A.D.2
-
59
-
-
0031060163
-
Recombinational history and molecular evolution of Western equine encephalomyelitis complex alphaviruses
-
Weaver SC, et al. 1997. Recombinational history and molecular evolution of Western equine encephalomyelitis complex alphaviruses. J. Virol. 71:613-623.
-
(1997)
J. Virol.
, vol.71
, pp. 613-623
-
-
Weaver, S.C.1
-
60
-
-
33947720028
-
Selective 2=-hydroxyl acylation analyzed by primer extension (SHAPE): quantitativeRNAstructure analysis at single nucleotide resolution
-
Wilkinson KA, Merino EJ, Weeks KM. 2006. Selective 2=-hydroxyl acylation analyzed by primer extension (SHAPE): quantitativeRNAstructure analysis at single nucleotide resolution. Nat. Protoc. 1:1610-1616.
-
(2006)
Nat. Protoc.
, vol.1
, pp. 1610-1616
-
-
Wilkinson, K.A.1
Merino, E.J.2
Weeks, K.M.3
-
61
-
-
0036899166
-
Biological and biomedical implications of the co-evolution of pathogens and their hosts
-
Woolhouse ME, Webster JP, Domingo E, Charlesworth B, Levin BR. 2002. Biological and biomedical implications of the co-evolution of pathogens and their hosts. Nat. Genet. 32:569-577.
-
(2002)
Nat. Genet.
, vol.32
, pp. 569-577
-
-
Woolhouse, M.E.1
Webster, J.P.2
Domingo, E.3
Charlesworth, B.4
Levin, B.R.5
-
62
-
-
0029590069
-
Deficient signaling in mice devoid of doublestranded RNA-dependent protein kinase
-
Yang YL, et al. 1995. Deficient signaling in mice devoid of doublestranded RNA-dependent protein kinase. EMBO J. 14:6095-6106.
-
(1995)
EMBO J.
, vol.14
, pp. 6095-6106
-
-
Yang, Y.L.1
-
63
-
-
0036827856
-
Placement of the structural proteins in Sindbis virus. J. Virol.
-
Zhang W, et al. 2002. Placement of the structural proteins in Sindbis virus. J. Virol. 76:11645-11658.
-
(2002)
, vol.76
, pp. 11645-11658
-
-
Zhang, W.1
|