Evolutionary relationships and systematics of the alphaviruses

Journal of Virology

Volumn 75, Issue 21, 2001, Pages 10118-10131

  Powers, A M ^a   Brault, A C ^a   Shirako, Y ^a   Strauss, E G ^a   Kang, W ^a   Strauss, J H ^a   Weaver, S C ^a  

^a University of Texas Medical Branch School of Medicine   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALPHA VIRUS; ANIMAL CELL; ARTICLE; CONTROLLED STUDY; GENE CONSTRUCT; GENE SEQUENCE; GENETIC VARIABILITY; MAXIMUM LIKELIHOOD METHOD; MOLECULAR EVOLUTION; NONHUMAN; NUCLEIC ACID BASE SUBSTITUTION; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; VIRUS ISOLATION; VIRUS STRAIN;

3' UNTRANSLATED REGIONS; ALPHAVIRUS; BASE SEQUENCE; GENES, VIRAL; PHYLOGENY; POLYMERASE CHAIN REACTION; VIRAL ENVELOPE PROTEINS; VIRAL STRUCTURAL PROTEINS;

EID: 0034795886     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.75.21.10118-10131.2001     Document Type: Article

References (81)

1. Western equine encephalomyelitis: Virulence markers and their epidemiological significance
2. Genetic and antigenic diversity among eastern equine encephalitis viruses from North, Central, and South America
3. Identification of a new Venezuelan equine encephalitis virus from Brazil
4. Arbovirus serogroups: Definition and geographic distribution
5. Identification of an antigenic subtype of eastern equine encephalitis virus isolated from a human
6. Arbovirus investigations in Argentina, 1977-1980. III. Identification and characterization of viruses isolated, including new subtypes of western and Venezuelan equine encephalitis viruses and four new bunyaviruses (Las Maloyas, Resistencia, Barranqueras, and Antequera)
7. Proposed antigenic classification of registered arboviruses
8. Genetic conservation of Highlands J viruses
9. Characterization of Barmah forest virus: An alphavirus with some unusual properties
10. A comprehensive set of sequence analysis programs for the VAX
11. Genome sequences of a mouse-avirulent and a mouse-virulent strain of Ross River virus
12. Confidence limits on phylogenies: An approach using the bootstrap
13. High mortality of domestic turkeys associated with Highlands J virus and eastern equine encephalitis virus infections
14. The capsid protein of Semliki Forest virus has clusters of basic amino acids and prolines in its amino-terminal region
15. Nucleotide sequence of cDNA coding for Semliki Forest virus membrane glycoproteins
16. Alphavirus RNA genome repair and evolution: Molecular characterization of infectious Sindbis virus isolates lacking a known conserved motif at the 3′ end of the genome
17. Most alphaviruses share a conserved epitopic region on their nucleocapsid protein
18. Isolation of a newly recognized alphavirus from mosquitoes in Vietnam and evidence for human infection and disease
19. Western equine encephalitis virus is a recombinant virus
20. Enzyme-linked immunosorbent assay for the serological survey of Getah virus in pigs
21. O'nyong-nyong virus disease
22. Alphaviruses
23. Antigenic relationships of group A arboviruses by plaque reduction neutralization testing
24. Virus purification
25. Nucleotide sequence of the 26 S mRNA of the virulent Trinidad donkey strain of Venezuelan equine encephalitis virus and deduced sequence of the encoded structural proteins
26. The full-length nucleotide sequences of the virulent Trinidad donkey strain of Venezuelan equine encephalitis virus and its attenuated vaccine derivative, strain TC-83
27. Nucleotide sequences of the 26S mRNAs of the viruses defining the Venezuelan equine encephalitis antigenic complex
28. Genetic evidence that epizootic Venezuelan equine encephalitis (VEE) viruses may have evolved from enzootic VEE subtype I-D virus
29. Pathogenicity for horses of original Sagiyama virus, a member of the Getah virus group
30. Transplacental infection in mice inoculated with Getah virus
31. Clinical and virological observations on swine experimentally infected with Getah virus
32. Arbovirus of marine mammals: A new alphavirus isolated from the elephant seal louse, Lepidophthirus macrorhini
33. Emergence of epidemic O'nyong-nyong fever in Uganda after a 35-year absence: Genetic characterization of the virus
34. Nucleotide sequence of the Barmah Forest virus genome
35. Complete sequence of the genomic RNA of o'nyong-nyong virus and its use in the construction of alphavirus phylogenetic trees
36. Isolation and complete nucleotide sequence of a Chinese Sindbis-like virus
37. Mosquito-borne viruses and epidemic polyarthritis
38. Viruses recovered from mosquitoes and wildlife serum collected in the Murray Valley of Southeastern Australia, February 1974, during an epidemic of encephalitis
39. Sequencing of prototype viruses in the Venezuelan equine encephalitis antigenic complex
40. Recovery of Tonate virus ("Bijou Bridge" strain), a member of the Venezuelan equine encephalomyelitis virus complex, from cliff swallow nest bugs (Oeciacus vicarius) and nestling birds in North America
41. Arbovirus investigations in Argentina, 1977-1980. IV. Serologic surveys and sentinel equine program
42. Complete sequence of Venezuelan equine encephalitis virus subtype IE reveals conserved and hypervariable domains within the C terminus of nsP3
43. Geographic distribution of Venezuelan equine encephalitis virus subtype IE genotypes in Central America and Mexico
44. Viruses isolated from mosquitoes collected in Sri Lanka
45. The alphavirus 3′-nontranslated region: Size heterogeneity and arrangement of repeated sequence elements
46. Mayaro virus disease
47. Genetic stability among temporally and geographically diverse isolates of Barmah Forest virus
48. Reemergence of chikungunya and o'nyong-nyong viruses: Evidence for distinct geographical lineages and distant evolutionary relationships
49. Repeated emergence of epidemic/epizootic Venezuelan equine encephalitis from a single genotype of enzootic subtype ID virus
50. Nucleotide sequence of the 26S mRNA of Sindbis virus and deduced sequence of the encoded virus structural proteins
51. Aura virus is a New World representative of Sindbis-like viruses
52. Vectors vs. humans in Australia - Who is on top down under? An update on vector-borne disease and research on vectors in Australia
53. Ecological studies of enzootic Venezuelan equine encephalitis in north-central Venezuela, 1997-1998
54. Geographic distribution and evolution of Sindbis virus in Australia
55. Togaviridae: The viruses and their replication
56. Structure of the Ockelbo virus genome and its relationship to other Sindbis viruses
57. Genome structure of Sagiyama virus and its relatedness to other alphaviruses
58. Molecular evidence that epizootic Venezuelan equine encephalitis (VEE) I-AB viruses are not evolutionary derivatives of enzootic VEE subtype I-E or II viruses
59. Complete nucleotide sequence of the genomic RNA of Sindbis virus
60. The alphaviruses: Gene expression, replication, and evolution
61. Arthritides caused by mosquito-borne viruses
62. The distribution and prevalence of group A arbovirus neutralizing antibodies among human populations in Southeast Asia and the Pacific Islands
63. Mayaro virus disease: An emerging mosquito-borne zoonosis in tropical South America
64. Trocara virus: A newly recognized alphavirus (Togaviridae) isolated from mosquitoes in the Amazon basin
65. Virus species, a much overlooked but essential concept in virus classification
66. Introduction to the species concept in virus taxonomy
67. Rainbow trout sleeping disease virus is an atypical alphavirus
68. Egg-production drop in turkeys associated with alphaviruses: Eastern equine encephalitis virus and Highlands J virus
69. Venezuelan equine encephalomyelitis
70. Genetic and phenotypic changes accompanying the emergence of epizootic subtype IC Venezuelan equine encephalitis viruses from an enzootic subtype ID progenitor
71. Evolution of alphaviruses
72. Recurrent emergence of Venezuelan equine encephalomyelitis
73. Evolution of alphaviruses in the eastern equine encephalomyelitis complex
74. Phylogenetic analysis of alphaviruses in the Venezuelan equine encephalitis complex and identification of the source of epizootic viruses
75. Family Togaviridae
76. Genetic characterization of an antigenic subtype of eastern equine encephalomyelitis virus
77. A comparison of the nucleotide sequences of eastern and western equine encephalomyelitis viruses with those of other alphaviruses and related RNA viruses
78. Recombinational history and molecular evolution of western equine encephalomyelitis complex alphaviruses
79. Salmon pancreas disease virus, an alphavirus infecting farmed Atlantic salmon, Salmo salar L