Paenibacillus frigoriresistens sp. nov., a novel psychrotroph isolated from a peat bog in heilongjiang, northern china

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 102, Issue 2, 2012, Pages 297-305

  Ming, Hong ^a,b   Nie, Guo Xing ^c   Jiang, Hong Chen ^d   Yu, Tian Tian ^b   Zhou, En Min ^b   Feng, Hui Gen ^a   Tang, Shu Kun ^b   Li, Wen Jun ^b,e  

^a XINXIANG MEDICAL UNIVERSITY   (China)

^b BEIJING UNIVERSITY OF POSTS AND TELECOMMUNICATIONS   (China)

^c HENAN NORMAL UNIVERSITY   (China)

^d CHINA UNIVERSITY OF GEOSCIENCES   (China)

^e XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY   (China)

Author keywords

16S rRNA gene; Paenibacillus frigoriresistens sp. nov.; Polyphasic taxonomy

Indexed keywords

ALANINE; DIAMINOPIMELIC ACID; GALACTOSE; GLUCOSE; GLUTAMIC ACID; PEPTIDOGLYCAN; RIBOSE; RNA 16S;

ARTICLE; BACTERIAL GROWTH; BACTERIUM ISOLATION; CHEMOTAXONOMY; CHINA; DNA BASE COMPOSITION; DNA DNA HYBRIDIZATION; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PAENIBACILLUS; PAENIBACILLUS ALGINOLYTICUS; PAENIBACILLUS CHONDROITINUS; PAENIBACILLUS FRIGORIRESISTENS; PAENIBACILLUS POCHEONENSIS; PEATLAND; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; RNA GENE; RNA SEQUENCE;

CHINA; MOLECULAR SEQUENCE DATA; PAENIBACILLUS; SOIL; SOIL MICROBIOLOGY; WETLANDS;

BACTERIA (MICROORGANISMS); PAENIBACILLUS; PAENIBACILLUS ALGINOLYTICUS; PAENIBACILLUS CHONDROITINUS; POSIBACTERIA;

EID: 84865770632     PISSN: 00036072     EISSN: 15729699     Source Type: Journal    
DOI: 10.1007/s10482-012-9738-7     Document Type: Article

References (59)

1. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-410
2. Ash C, Priest FG, CollinsMD(1993) Molecular identification of rRNA group 3 bacilli (Ash, Farrow, Wallbanks, and Collins) using a PCR probe test. proposal for the creation of a new genus Paenibacillus. Antonie Van Leeuwenhoek 64: 253-260 (Pubitemid 24151590)
3. Baik KS, Choe HN, Park SC, Kim EM, Seong CN (2011) Paenibacillus wooponensis sp. nov., isolated from wetland freshwater. Int J Syst Evol Microbiol 61:2763-2768
4. Barrow GI, Feltham RKA (1993) Cowan and Steel' manual for the identification of medical bacteria, 3rd edn. Cambridge University Press, Cambridge
5. Beneduzi A, Costa PB, Parma M, Melo IS, Bodanese-Zanettini MH, Passaglia LMP (2010) Paenibacillus riograndensis sp. nov., a nitrogen-fixing species isolated from the rhizosphere of Triticum aestivum. Int J Syst Evol Microbiol 60:128-133
6. Buck JD (1982) Nonstaining (KOH) method for determination of Gram reactions of marine bacteria. Appl Environ Microbiol 44:992-993 (Pubitemid 13213372)
7. Choi KK, Park CW, Kim SY, Lyoo WS, Lee SH, Lee JW (2004) Polyvinyl alcohol degradation by Microbacterium barkeri KCCM 10507 and Paeniblacillus amylolyticus KCCM 10508 in dyeing wastewater. J Microbiol Biotechnol 14:1009-1013 (Pubitemid 39497078)
8. Christensen H, Angen O, Mutters R, Olsen JE, Bisgaard M (2000) DNA-DNA hybridization determined in microwells using covalent attachment of DNA. Int J Syst Evol Microbiol 50:1095-1102 (Pubitemid 30333464)
9. Chun J, Lee JH, Jung Y, Kim M, Kim S, Kim BK, Lim YW (2007) EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57:2259-2261 (Pubitemid 350031697)
10. Collins MD, Pirouz T, Goodfellow M, Minnikin DE (1977) Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100:221-230 (Pubitemid 8122111)
11. De Vos P, Ludwig W, Schleifer KH, Whitman WB (2010) Paenibacillaceae fam. nov. in list of new names and new combinations previously effectively, but not validly, published, validation list no. 132. Int J Syst Evol Microbiol 60:469-472
12. Ezaki T, Hashimoto Y, Yabuuchi E (1989) Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39:224-229
13. Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368-376 (Pubitemid 11016207)
14. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-789
15. Fitch WM (1971) Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20:406-416
16. Girardin H, Albagnac C, Dargaignaratz C, Nguyen-The C, Carlin F (2002) Antimicrobial activity of foodborne Paenibacillus and Bacillus spp. against Clostridium botulinum. J Food Prot 65:806-813 (Pubitemid 34494831)
17. Guindon S, Gascuel O (2003) A simple, fast, and accurae algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52(5):696-704 (Pubitemid 37365050)
18. He L, Li W, Huang Y, Wang LM, Liu ZH, Lanoot BJ, Vancanneyt M, Swings J (2005) Streptomyces jietaisiensis sp. nov., isolated from soil in northern China. Int J Syst Evol Microbiol 55:1939-1944 (Pubitemid 41410406)
19. Heyndrickx M, Vandemeulebroecke K, Scheldeman P, Kersters K, De Vos P, Logan NA, Aziz AM, Ali N, Berkeley RCW (1996) A polyphasic reassessment of the genus Paenibacillus, Reclassification of Bacillus lautus (Nakamura 1984) as Paenibacillus lautus comb. nov. and of Bacillus peoriae (Montefusco et al. 1993) as Paenibacillus peoriae comb. nov., and emended descriptions of P. lautus and of P. peoriae. Int J Syst Bacteriol 46:998-1003
20. Hong YY, Ma YC, Zhou YG, Gao F, Liu HC, Chen SF (2009) Paenibacillus sonchi sp. nov., a nitrogen-fixing species isolated from the rhizosphere of Sonchus oleraceus. Int J Syst Evol Microbiol 59:2656-2661
21. Jin HJ, Lv J, Chen SF (2011) Paenibacillus sophorae sp. nov., a nitrogen-fixing species isolated from the rhizosphere of Sophora japonica. Int J Syst Evol Microbiol 61:767-771
22. Kämpfer P, Falsen E, Lodders N, Martin K, Kassmannhuber J, Busse HJ (2011) Paenibacillus chartarius sp. nov. isolated from a papermill. Int J Syst Evol Microbiol 59:2656-2661
23. Khianngam S, Tanasupawat S, Lee JS, Lee KC, Akaracharanya A (2009) Paenibacillus siamensis sp. nov., Paenibacillus septentrionalis sp. nov. and Paenibacillus montaniterrae sp. nov., xylanase-producing bacteria from Thai soils. Int J Syst Evol Microbiol 59:130-140
24. Khianngam S, Tanasupawat S, Akaracharanya A, Kim KK, Lee KC, Lee JS (2011) Paenibacillus xylanisolvens sp. nov., a xylan-degrading bacterium from soil. Int J Syst Evol Microbiol 61:160-164
25. Kim DS, Bae CY, Jeon JJ, Chun SJ, Oh HW, Hong SG, Baek KS, Moon EY, Bae KS (2004) Paenibacillus elgii sp. nov., with broad antimicrobial activity. Int J Syst Evol Microbiol 54:2031-2035 (Pubitemid 39585383)
26. Kim kk, Lee KC, Yu H, Ryoo S, Park Y, Lee JS (2010) Paenibacillus sputi sp. nov., isolated from the sputum of a patient with pulmonary disease. Int J Syst Evol Microbiol 60:2371-2376
27. Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111-120 (Pubitemid 11166431)
28. Kimura M (1983) The neutral theory of molecular evolution. Cambridge University Press, Cambridge
29. Kishore KH, Begum Z, Pathan AAK, Shivaji S (2010) Paenibacillus glacialis sp. nov., isolated from the Kafni glacier of the himalayas,India. Int J Syst Evol Microbiol 60: 1909-1913
30. Konishi J, Maruhashi K (2003) Hydroxyphenyl benzene sulfinate desulfinase from the thermophilic desulfurizing bacterium Paenibacillus sp. strain A11-2: purification and characterization. Appl Microbiol Biotechnol 62:356-361 (Pubitemid 37214917)
31. Kovacs N (1956) Identification of Pseudomonas pyocyanea by the Oxidase Reaction. Nature 178:703
32. Lal S, Tabacchioni S (2009) Ecology and biotechnological potential of Paenibacillus polymyxa: a minireview. Indian J. Microbiol 49:2-10
33. Leifson E (1960) Atlas of bacterial flagellation. Academic Press, London
34. Li WJ, Xu P, Schumann P, Zhang YQ, Pukall R, Xu LH, Stackebrandt E, Jiang CL (2007) Georgenia ruanii sp. nov., a novel actinobacterium isolated from forest soil in Yunnan (China) and emended description of the genus Georgenia. Int J Syst Evol Microbiol 57:1424-1428 (Pubitemid 47162982)
35. MacFaddin JF (1980) Biochemical tests for identificat bacteria, 2nd edn. Williams & Wilkins, Baltimore
36. Mesbah M, Premachandran U, Whitman WB (1989) Precise measurement of the G?C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39:159-167
37. Minnikin DE, Collins MD, GoodfellowM(1979) Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskovia and related taxa. J Appl Bacteriol 47:87-95 (Pubitemid 9239553)
38. Minnikin DE, O'Donnell AG, Goodfellow M, Alderson G, Athalye M, Schaal A, Parlett JH (1984) An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2:233-241 (Pubitemid 14058168)
39. Moon JC, Jung YJ, Jung JH, Jung HS, Cheong YR, Jeon CO, Lee KO, Lee SY (2011) Paenibacillus sacheonensis sp. nov., a xylanolytic and cellulolytic bacterium isolated from tidal flat sediment. Int J Syst Evol Microbiol 61: 2753-2757
40. Moore DD, Dowhan D (1995) Preparation and analysis of DNA. In: Ausubel F M, Brent R, Kingston R E, Moore D D, Seidman J G, Smith J A, Struhl K (ed) Current protocols in molecular biology. Wiley, New York, p 2-11
41. Nie GX, Ming H, Li S, Zhou EM, Cheng J, Tang X, Feng HG, Tang SK, Li WJ (2012) Amycolatopsis dongchuanensis sp. nov., a novel actinobacterium isolated from dry-hot valley in Yunnan, south-west China. Int J Syst Evol Microbiol. doi:10.1099/ijs.0.038125-0
42. Nielsen P, Sorensen J (1997) Multi-Target and medium-independent fungal antagonism by hydrolytic enzymes in Paenibacillus polymyxa and Bacillus pumilus strains from barley rhizosphere. FEMS Microbiol Ecol 22:183-192 (Pubitemid 27149483)
43. Park MJ, Kim HB, An DS, Yang HC, Oh ST, Chung HJ, Yang DC (2007) Paenibacillus soli sp. nov., a xylanolytic bacterium isolated from soil. Int J Syst Evol Microbiol 57: 146-150
44. Park DS, Jeong WJ, Lee KH, Oh HW, Kim BC, Bae KS, Park HY (2009) Paenibacillus pectinilyticus sp. nov., isolated from the gut of Diestrammena apicalis. Int J Syst Evol Microbiol 59:1342-1347
45. Roux V, Fenner L, Raoult D (2008) Paenibacillus provencensis sp. nov., isolated from human cerebrospinal fluid, and Paenibacillus urinalis sp. nov., isolated from human urine. Int J Syst Evol Microbiol 58:682-687
46. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic tree. Mol Biol Evol 4:406-425
47. Sasser M (1990) Identification of bacteria by gas chromatography of cellular fatty acids. USFCC Newsl 20:16
48. Scheldeman P, Goossens K, Rodriguez-Diaz M, Pil A, Goris J, Herman L, De Vos P, Logan NA, Heyndrickx M (2005) Paenibacillus lactis sp. nov., isolated from raw and heattreated milk. Int J Syst Bacteriol 54:885-891
49. Schleifer KH (1985) Analysis of the chemical composition and primary structure of murein. Methods Microbiol 18: 123-156
50. Shida O, Takagi H, Kadowaki K, Nakamura LK, Komagata K (1997) Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus. Int J Syst Bacteriol 47:289-298 (Pubitemid 27163888)
51. Smibert RM, Krieg NR (1994) Phenotypic characterization. In: Gerhardt P, Murray RGE, Wood WA, Krieg NR (eds) Methods for general and molecular bacteriology. American Society for Microbiology, Washington, D.C., pp 607-654
52. Stackebrandt E, Goebel BM (1994) Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44:846-849 (Pubitemid 24315169)
53. Takeda M, Suzuki L, Koizumi JI (2005) Paenibacillus hodogayensis sp. nov., capable of degrading the polysaccharide produced by Sphaerotilus natans. Int J Syst Evol Microbiol 55:737-741 (Pubitemid 40485062)
54. Tamaoka J, Katayama-Fujimura Y, Kuraishi H (1983) Analysis of bacterial menaqui-none mixtures by high performance liquid chromatography. J Appl Bacteriol 300:31-36 (Pubitemid 13082739)
55. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739
56. Tang SK, Wang Y, Chen Y, Lou K, Cao LL, Xu LH, Li WJ (2009) Zhihengliuella alba sp. nov., and emended description of the genus Zhihengliuella. Int J Syst Evol Microbiol 59:2025-2032
57. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882 (Pubitemid 28022245)
58. Traiwan J, Park MH, Kim W (2011) Paenibacillus puldeungensis sp. nov., isolated from a grassy sandbank. Int J Syst Evol Microbiol 61:670-673
59. Von Der Weid I, Alviano DS, Santos AL, Soares RM, Alviano CS, Seldin L (2003) Antimicrobial activity of Paenibacillus peoriae strain NRRL BD-62 against a broad spectrum of phytopathogenic bacteria and fungi. J Appl Microbiol 95:1143-1151 (Pubitemid 37357398)